TCONS_00046786 (transcript) - C. hemisphaerica

Overview
NameTCONS_00046786
Unique NameTCONS_00046786
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1930

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00046786 ID=TCONS_00046786|Name=TCONS_00046786|organism=Clytia hemisphaerica|type=transcript|length=1930bp
CAAAAAGTTGATTGACCAAAGCAAACAGCACCAAGAtgaataaagaaaac
aacgaaaattaaaaaaagtaaagcACCCTAACATGTCAAAGGTGATTGAT
AAAATCGTCAAAGAGTTTAAATCATGGACTTGGCATCACTTGTTTGTCTT
CGTGTTAACTTTCATGGCATATGCGGCTTTCCACGGCTGCCGAAAGTCGT
TTAGTAACATCAAGGATGAGTTAGCAGAAAACTTTACTCCCAATACTACT
TATTTCCCATATGATACTTGGCAGAAAGAAACTACCTTCGCGAACAAGGA
TGACGCTGATGTTTTCTTAGGTGAATTagattctttgtttttgttcgCCT
ACGCTTTTGGTTTATTCGTCAATGGTGCGTTAGGCGACCGCCTGAATCTA
CGATATTTCCTCGCCTTCGGCATGTGTGGTTCAGCTAtcgtcactttcat
tttcggtTATCTTGGAGCAGCTTACCACGTCCGAAAAACCATTTTTTATC
AGATTCTACAGTTCTTCAATGGTCTGTTGCAATCGATCGGATGGCCAGCT
GTAGTAAGTATTATGGGGAATTGGTTCTCAAAATCTTCAGCTGGATTTGT
GTTCGGGATCTGGTCGGCAAATGCGTCCGTTGGAAACATTATCGGTTCCG
TAGTTCTAGCTCAAGTGTTGAATTATGGTTACGAATATGGTATGTTGTTG
AATTCTTTAATTCTTTTTTGTGTCGGtttgattgttttgttttgcctCGT
TGTCCACCCTAATGAGATCGGCCTCGAAAACCCCGATCAACAAGAACGCG
TCGAAACTTTAGGACAGGAGGATAACGATCCTCTACTACCATCAAACAAA
GTCGCCGTACAACAACCAAAACCGATCAGTTTCATCCAAGCTGTTCTAAT
ACCAGGTGTGATCCCGTACTCGTTAGCGTACGCTTGTCTGAAGTTGGTTA
ACTATTCGTTCTTCTTTTGGCTACCAACTTACCTCTCACAGGGTTTACAC
TGGAAAGATGACAAGAGCGTCGAATTTTCAAACTTCTACGACATCGGTGG
TATCTTTGGAGGTATTATCGCGGGAATCGTTAGTGATTGTATCGGAGTTC
GATCACCAGTTGTCGGCATCATGTTAGCGTTTTCCGTCGGTTCAATCCTA
TGTTTTAATTATTTCTCGGGAGTTTACAATGTCACAGTCGCGATCTTATT
CATTAATGGTTTTATGATCGGAGGTCCAGCCAATACAATTAGTACGGCAA
TCACAGCTGATCTTGGAAAACACGAGAAAATCATGGGTAATGCTGAAGCT
TTGGCAACAGTCACTGGCATCGTAGACGGGACTGGCTCTGTCGGCGCTGC
CATTGGCCAGTACCTTGTTGGGGTTATTAATAAGAAAGCTGGATGGCAAT
ATGTGTTTTATTTCTTGATCGTGATGACGGGCTTGAGTATCGTGTGTATT
ATTCCGATGTTAATCAACGAACTTAAATATCTGTTCCGAAGACGCCCAGA
CCCTAGACGATATTCGCCTATAGGCTCTCAAGCAGAACCCGAAGAAGTAC
GTTCGTAAAGTTACTTATGTCGAATAATTAGATTTTAGGGATACtctttt
gtgtgttttttctttacttattgtattttttaagttatttttggacctac
cctggtggaggtcctataaattaacctgtgttcgtccgttcgtccgtccg
ttcgttcgttcgttcgtctgttaccaacttttctcaggattgaatcatag
gaatcttttgatttttggtacaaaggtgccaaatggtggtggccaaaatg
tgacggagcccgattttcgaaaaaaaaattttttggcaaatttgggccaa
aaaacggctaaaaaactggttttttagactttgtgaaaaattggataatt
aattttttctgattttttgtatgaaagtag
Run BLAST on NCBI

protein sequence of TCONS_00046786-protein

>TCONS_00046786-protein ID=TCONS_00046786-protein|Name=TCONS_00046786-protein|organism=Clytia hemisphaerica|type=polypeptide|length=491bp
MSKVIDKIVKEFKSWTWHHLFVFVLTFMAYAAFHGCRKSFSNIKDELAEN
FTPNTTYFPYDTWQKETTFANKDDADVFLGELDSLFLFAYAFGLFVNGAL
GDRLNLRYFLAFGMCGSAIVTFIFGYLGAAYHVRKTIFYQILQFFNGLLQ
SIGWPAVVSIMGNWFSKSSAGFVFGIWSANASVGNIIGSVVLAQVLNYGY
EYGMLLNSLILFCVGLIVLFCLVVHPNEIGLENPDQQERVETLGQEDNDP
LLPSNKVAVQQPKPISFIQAVLIPGVIPYSLAYACLKLVNYSFFFWLPTY
LSQGLHWKDDKSVEFSNFYDIGGIFGGIIAGIVSDCIGVRSPVVGIMLAF
SVGSILCFNYFSGVYNVTVAILFINGFMIGGPANTISTAITADLGKHEKI
MGNAEALATVTGIVDGTGSVGAAIGQYLVGVINKKAGWQYVFYFLIVMTG
LSIVCIIPMLINELKYLFRRRPDPRRYSPIGSQAEPEEVRS
Run BLAST on NCBI

transcript from alignment at scaffold_117:492307..499779+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00046786 ID=TCONS_00046786|Name=TCONS_00046786|organism=Clytia hemisphaerica|type=transcript|length=7473bp|location=Sequence derived from alignment at scaffold_117:492307..499779+ (Clytia hemisphaerica)
CAAAAAGTTGATTGACCAAAGCAAACAGCACCAAGAGTAAGTTTACAGTA
TAGTCATACTATGCCATAGTCAGATAGATTGAAACCCCTAAAAACTCTCA
CTTTCCCACGACGGTCACGGTGGTGATGACTTCTTCTTCTTTCGTATAAT
AAGTTTAAGTGAATAACACAAACAGCTCTATTTTTGGGATCTGGCCTGGC
GGAATAGTGTACCGTAggacggggtgaatcggataccCGGGGTGAATTGG
ATACCCGGGGTGAATTGGATACCCGAGGGTGAATCGGATAATTTGTTTAT
AATCCCCGGGGATGTCTTTTTCCATTCTGTTTTCAGATCCCGTTCACTGA
TCGATCAAGCTATTTCTATTTAATCAGGCGACCTAGTAGGGTTTGGTATG
GATGTGGTTATGTATCAGGTTGTCTAGGAATAGGGTTAAATTTACAATTG
CAAAAACGGTGCAAAACTTCATGATTTCCGATACTGTAGCtatattcaag
attttttaaggcaaaatcTTGGATTTCCCAATAAATAGCAATGAAATAGA
GCATAGAATagaaattttatggattttctgaTACTGATGACCAAATAATT
AGGAAAATCCTGCATTTTCCGGgaccttttttaaaaatctttcaggATTT
CCAAGTGATAAATAATTCCAAAAAACCCTGTCATCCACCGGCAAATAATG
TGTGTTTCCATTTCAAGAAATGACGTGCAAGTCATCGATGACCATCTGGA
AATAAGGCTGCAAtaacaaataacttgtgttcatgtcagaaagtttcaaa
atacTGTACCTTTCccataattcaaatttctcagaaatgacaagaaaatg
tttcatttcCCTTCGTACCTCCAAAAATAGGgcaaaatcagaatcccccc
tttataaaggggggggggcactatgGCCTGCAAGGGGTTAGGGCAAGTAT
CTATCTCTCAATATCTTTTTGggaattttcagggtggtatgaTGAAAAAA
ACATATCATAATTTGAaagggaaaagaaaagaaaagctaaaaaaacccca
acaattaaattatttttgaaaaaaattgtcttgCAAAATCGTCTGCTTGC
GAAAATTAAGGTTGAaacaatttttctttgctttttggtCTATCTGTCTC
TTTCataatcaggtaggtccaatcagcATCCAGCTTGTTGTCCCTAAAAC
ATTGAACATTGGTCGAATtgaattagtcccaataagggttgtaaaattca
caaaatttttcagTTGTTCCTCTTTTTTAAGTCCTGCTAAGTGTGCGACG
GTCAAAAGAAGTCAGGTGGCATACCCCGTCAgcttccaaccccccccccc
cNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNccccccccccccggttgaAAACGAAA
TATGATATTAAGAAAGTTCAAATTGTAGGAAAAAGTAggaattgattttt
gatttatttaatgGCATAATGATCATTTTTCTATGAATCATGGATCACAT
GATTTGCTGCAATCCTTGTTGGGCTTAGTCAATAACTTTCCACACGAAAA
TTTCTCTGAGACCAGACAATGTTTTGACTTCTCATTACTCAAAACAGCAC
AGGAAGTACAGGTACTACATAAATTGACTGTCATAGCCTCCTTGGGacga
aaacttttttaaattctatCTAGCAGaaacaataaagaaaaatggCTGAA
GAAATTGAGGCACAAACTTTCCCAAATATAGAAGATAATGATTCAAGCTC
ACAGCTAGGTTCAAATGCTTCCAATgaagttttaaaagaacaagACGCAG
ATGTTATTGACGAAACAGCAAGTATGATAAATGTTGAAGAATACAAACAC
GAATCTATTGTTAAGGATATCCCAAAGACTGAATTAGAGAAAATGACACC
AAGTTGGAAGACAAAGATCATTGAGAAAATACCAGCAGAGGAATTAGATG
GTCTatctaaaaatcagaaaaaaaagttgtttaagAAGAAGATCTTTGAA
GAAACACGACATGAGAGACGACAAGAAGAACGCTCACGTCGTAAAGAGAA
ACGCAAAAAGGAAAAGGAGTTAGGACTGGAGGTTCCGCGGAAATTACGTG
ctaaacatttcaaaaatattgaataccGTGACCCCAATATTGTCATTGAT
TTAGATTTCTATGAGTTGATGAATGAAACTGATGTTAGGATGGTTGTGAA
GCAGGTTAATTCTTGTTATTCCATCAACCGAAAAGCAAAACATCCTGTTC
ATTTACATGCAACTAGCTTTCATGGACCTTTGAAAGACTTATTTGTAAAG
CTACAACCAGGTAGTCCACATTGGGACTTTCATTTCCAAGAGAAAGACTA
CATTGATTTGTTTCAGAAAGAGAAGATAGTCTACTTATCGTCAGATTCGG
ATAATGTTCTAGAGAAAATGGATGAAAATAAAGTCTATGTGATTGGAGGC
TTAGTAGATCATAATCAACATAAAGGACTTTGTTTAAAGCGAGCCCAAGA
GAAGGGATTAGCTCATGCTAAACTACCTATTAACAAATTCATCTCATTAT
CAACAAGAAAAGTATTGACTATCAATCACGTCTTTGAGATTTTATCCAAG
AACCTTGAAACTAGAGATTGGAAAGAATCCTTTTTCTCAGTGCTGCCAAA
AAGGAAAGGGATCGAAGACAAGAAAGAAGAAGTTGTTGTGGCAACctaaa
tgattttgttttaatGTTGGGTTTTTGTTTGGGTTGGAACAAAATTTTTC
TACATAATCTTTAGGTTAATTATATTATCAAACTATCTATTTAGTttctt
tttgtatcttttttaaaagaaaaaagagctcACAATTTAACATTATTTCA
AGGTAAAATTATTACtttcttttgtaatatttttggtgttgaagagtcaa
aaaggttaaaaaaggtcACAGTTATTTCATTTCTGGAGTCTTCAAAATCT
CTATGATAGGACAAAATTTGCTgctgctacacgttttttttNATGGTAAA
AGGGCCAATCTGAAAAATATTGGCTGGGAAAACTAAGAATTTTTCATTGT
AACTGaccttaaattttgagattgacctTTTTTTGTAGCTTGGAGGGTNA
AATCTCTATGATAGGACAAAATTTgctgctacacgtttttttttttatta
gaacaccttaaatttggctgagcctggatgtgcttattcttttagcaatt
ttcagcctgaaatgttcttagatgcgttcttaaattttcagaNTGGCTCC
AAGTTGAAGGTCAGCTAAATAGAAAGATTTATAGTTTTCTGGGGAAATAT
ATTTAATGTATTCTTGTTATTTAACCAAGAAACTTGTTTTATTAAAGTTT
CCTTGGTATAACAAGAACTTAGTTAACTTCCTGTTATCATActcaaatgt
caaaaatgaaaGTATCAGATTACCACTTGCTTGTTTCTTTAATGTCATGT
TGTTgttaaaatgttattaaaaagGAATGTTTAAGCTTGGTCACGAGTTT
TGTAAAAGAGATTCATGTTGTGCTTTATTTCATTCTGGTTAGTAAAAGAT
TTGCATTTTGGACTTATTTGATCGCCAGCAATCATTTTGGTCACAAACAA
TGGATtctttagaatttaaaaaatttatcgTTAGAAAAAGGGATTTATTG
CTTAGATTTTATGGGAATCACTGTTGCTTTTTGGCTTAAgtttaaatgac
tttttttcaatgaatttttGTCCGAGGGGACagtacagtgtgtcccaaaa
aaagagaacaaatttttataaaaagtaaaattctcaaaaagttTTCATCT
TAACTGGGCTCTATGATTGAAATAAGAGTAAaattctctgttcaatcaat
agaGATTCAATTCCCAAGATAATCGAACAGGTTTTGGAGATTAAAATACC
TTaattggataaattttagcggggattaaatttggcgaatttggcgaatt
ttgccaaaattcgccaaattaaatcctcgcctaAATTTACAAATTCGGca
aatcgccaaattaaatccccgccaaacttaacaaaaagagaattatgtga
aaaattacAACTTATTAGTATATtgttgagtaattttcacccatttcagt
gtgacaaagtttccaattcgccaaattaaatccccgccaaattttgcgaa
attgatctatcgctaaattaaatcccctccaaaaatcgtattttggccaa
tctccaaattaaatccacgccaaaatttatccactaaGGTATTATTCATA
AAGTCATAAATTTCGCATGAATATAAATTTCGCATGAATATAAATTTCGC
ATGAATATAAATTTCGCATGAATATAAATTTCGCATGAATataaattatg
aggattttactttatataaatattttgttcgttttttttgggacacactg
taatGAATACTTACAATGTTAAATTTCATTTGGAAAATCTTTATATTTAG
CATTAgactttctttttctattttagtgaataaagaaaacaacgaaaatt
aaaaaaagtaaagcACCCTAACATGTCAAAGGTGATTGATAAAATCGTCA
AAGAGTTTAAATCATGGACTTGGCATCACTTGTTTGTCTTCGTGTTAACT
TTCATGGCATATGCGGCTTTCCACGGCTGCCGAAAGTCGTTTAGTAACAT
CAAGGATGAGTTAGCAGAAAACTTTACTCCCAATACTACTTATTTCCCAT
ATGATACTTGGCAGAAAGAAACTACCTTCGCGAACAAGGATGACGCTGAT
GTTTTCTTAGGTAAGGTGCCTTTTATTTTGACTGTTGAGCTTTATGTAAA
TCCTGGAGGCACTTCCTTGGTCCCGGCTAACTGGGATTTTTCTTCGGAGT
TTTTATGAAAGTGGTAACCTAATGAGGGCAAAGGTGTAAATGCGTTTTTG
CTTTCATCGAATACCTGATATGATGTTGTGTCACAAATATTTAAATGAAG
GTTCGATCGTGTTTACTGTATAATAATTATTTTGACTAAAATATGATCGC
GGTTataaaatctcattttctttatttatagGTGAATTagattctttgtt
tttgttcgCCTACGCTTTTGGTTTATTCGTCAATGGTGCGTTAGGCGACC
GCCTGAATCTACGATATTTCCTCGCCTTCGGCATGTGTGGTTCAGCTAtc
gtcactttcattttcggtTATCTTGGAGCAGCTTACCACGTCCGAAAANN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
TAACATGTCAAAGGTGATTGATAAAATCGTCAAAGAGTTTAAATCATGGA
CTTGGCATCACTTGTTTGTCTTCGTGTTAACTTTCATGGCATATGCGGCT
TTCCACGGCTGCCGAAAGTCGTTTAGTAACATCAAGGATGAGTTAGCAGA
AAACTTTACTCCCAATACTACTTATTTCCCATATGATACTTGGCAGAAAG
AAACTACCTTCGCGAACAAGGATGACGCTGATGTTTTCTTAGGTAAGGTG
CCTTTTATTTTGACTGTTGAGCTTTATGTAAATCCTGGAGGCACTTCCTT
GGTCCCGGCTAACTGGGATTTTTCTTCGGAGTTTTTATGAAAGTGGTAAC
CTAATGAGGGCAAAGGTGTAAATGCGTTTTTGCTTTCATCGAATACCTGA
TATGATGTTGTGTCACAAATATTTAAATGAAGGTTCGATCGTGTTTACTG
TATAATAATTATTTTGACTAAAATATGATCGCGATTataaaatctcattt
tctttatttatagGTGAATTagattctttgtttttgttcgCCTACGCTTT
TGGTTTATTCGTCAATGGTGCGTTAGGCGACCGCCTGAATCTACGATATT
TCCTCGCCTTCGGCATGTGTGGTTCAGCTAtcgtcactttcattttcggt
TATCTTGGAGCAGCTTACCACGTCCGAAAAACCATTTTTTATCAGATTCT
ACAGTTCTTCAATGGTCTGTTGCAATCGATCGGATGGCCAGCTGTAGTAA
GTATTATGGGGAATTGGTTCTCAAAATCTTCAGCTGGATTTGTGTTCGGG
ATCTGGTCGGCAAATGCGTCCGTTGGAAACATTATCGGTTCCGTAGTTCT
AGCTCAAGTGTTGAATTATGGTTACGAATATGGTATGTTGTTGAATTCTT
TAATTCTTTTTTGTGTCGGtttgattgttttgttttgcctCGTTGTCCAC
CCTAATGAGATCGGCCTCGAAAACCCCGATCAACAAGAACGCGTCGAAAC
TTTAGGACAGGAGGATAACGATCCTCTACTACCATCAAACAAAGTCGCCG
TACAACAACCAAAACCGATCAGTTTCATCCAAGCTGTTCTAATACCAGGT
GTGATCCCGTACTCGTTAGCGTACGCTTGTCTGAAGTTGGTTAACTATTC
GTTCTTCTTTTGGCTACCAACTTACCTCTCACAGGGTTTACACTGGAAAG
ATGACAAGAGCGTCGAATTTTCAAACTTCTACGACATCGGTGGTATCTTT
GGAGGTATTATCGCGGGAATCGTTAGTGATTGTATCGGAGTTCGATCACC
AGTTGTCGGCATCATGTTAGCGTTTTCCGTCGGTTCAATCCTATGTTTTA
ATTATTTCTCGGGAGTTTACAATGTCACAGTCGCGATCTTATTCATTAAT
GGTTTTATGATCGGAGGTCCAGCCAATACAATTAGTACGGCAATCACAGC
TGATCTTGGAAAACACGAGAAAATCATGGGTAATGCTGAAGCTTTGGCAA
CAGTCACTGGCATCGTAGACGGGACTGGCTCTGTCGGCGCTGCCATTGGC
CAGTACCTTGTTGGGGTTATTAATAAGAAAGCTGGATGGCAATATGTGTT
TTATTTCTTGATCGTGATGACGGGCTTGAGTATCGTGTGTATTATTCCGA
TGTTAATCAACGAACTTAAATATCTGTTCCGAAGACGCCCAGACCCTAGA
CGATATTCGCCTATAGGCTCTCAAGCAGAACCCGAAGAAGTACGTTCGTA
AAGTTACTTATGTCGAATAATTAGATTTTAGGGATACtcttttgtgtgtt
ttttctttacttattgtattttttaagttatttttggacctaccctggtg
gaggtcctataaattaacctgtgttcgtccgttcgtccgtccgttcgttc
gttcgttcgtctgttaccaacttttctcaggattgaatcataggaatctt
ttgatttttggtacaaaggtgccaaatggtggtggccaaaatgtgacgga
gcccgattttcgaaaaaaaaattttttggcaaatttgggccaaaaaacgg
ctaaaaaactggttttttagactttgtgaaaaattggataattaattttt
tctgattttttgtatgaaagtag

Coding sequence (CDS) from alignment at scaffold_117:492307..499779+

>TCONS_00046786 ID=TCONS_00046786|Name=TCONS_00046786|organism=Clytia hemisphaerica|type=CDS|length=2952bp|location=Sequence derived from alignment at scaffold_117:492307..499779+ (Clytia hemisphaerica)
ATGTCAAAGGTGATTGATAAAATCGTCAAAGAGTTTAAATCATGGACTTG
GCATCACTTGTTTGTCTTCGTGTTAACTTTCATGGCATATGCGGCTTTCC
ACGGCTGCCGAAAGTCGTTTAGTAACATCAAGGATGAGTTAGCAGAAAAC
TTTACTCCCAATACTACTTATTTCCCATATGATACTTGGCAGAAAGAAAC
TACCTTCGCGAACAAGGATGACGCTGATGTTTTCTTAGGTGAATTagatt
ctttgtttttgttcgCCTACGCTTTTGGTTTATTCGTCAATGGTGCGTTA
GGCGACCGCCTGAATCTACGATATTTCCTCGCCTTCGGCATGTGTGGTTC
AGCTAtcgtcactttcattttcggtTATCTTGGAGCAGCTTACCACGTCC
GAAAAACCATTTTTTATCAGATTCTACAGTTCTTCAATGGTCTGTTGCAA
TCGATCGGATGGCCAGCTGTAGTAAGTATTATGGGGAATTGGTTCTCAAA
ATCTTCAGCTGGATTTGTGTTCGGGATCTGGTCGGCAAATGCGTCCGTTG
GAAACATTATCGGTTCCGTAGTTCTAGCTCAAGTGTTGAATTATGGTTAC
GAATATGGTATGTTGTTGAATTCTTTAATTCTTTTTTGTGTCGGtttgat
tgttttgttttgcctCGTTGTCCACCCTAATGAGATCGGCCTCGAAAACC
CCGATCAACAAGAACGCGTCGAAACTTTAGGACAGGAGGATAACGATCCT
CTACTACCATCAAACAAAGTCGCCGTACAACAACCAAAACCGATCAGTTT
CATCCAAGCTGTTCTAATACCAGGTGTGATCCCGTACTCGTTAGCGTACG
CTTGTCTGAAGTTGGTTAACTATTCGTTCTTCTTTTGGCTACCAACTTAC
CTCTCACAGGGTTTACACTGGAAAGATGACAAGAGCGTCGAATTTTCAAA
CTTCTACGACATCGGTGGTATCTTTGGAGGTATTATCGCGGGAATCGTTA
GTGATTGTATCGGAGTTCGATCACCAGTTGTCGGCATCATGTTAGCGTTT
TCCGTCGGTTCAATCCTATGTTTTAATTATTTCTCGGGAGTTTACAATGT
CACAGTCGCGATCTTATTCATTAATGGTTTTATGATCGGAGGTCCAGCCA
ATACAATTAGTACGGCAATCACAGCTGATCTTGGAAAACACGAGAAAATC
ATGGGTAATGCTGAAGCTTTGGCAACAGTCACTGGCATCGTAGACGGGAC
TGGCTCTGTCGGCGCTGCCATTGGCCAGTACCTTGTTGGGGTTATTAATA
AGAAAGCTGGATGGCAATATGTGTTTTATTTCTTGATCGTGATGACGGGC
TTGAGTATCGTGTGTATTATTCCGATGTTAATCAACGAACTTAAATATCT
GTTCCGAAGACGCCCAGACCCTAGACGATATTCGCCTATAGGCTCTCAAG
CAGAACCCGAAGAAGTACGTTCGTAAATGTCAAAGGTGATTGATAAAATC
GTCAAAGAGTTTAAATCATGGACTTGGCATCACTTGTTTGTCTTCGTGTT
AACTTTCATGGCATATGCGGCTTTCCACGGCTGCCGAAAGTCGTTTAGTA
ACATCAAGGATGAGTTAGCAGAAAACTTTACTCCCAATACTACTTATTTC
CCATATGATACTTGGCAGAAAGAAACTACCTTCGCGAACAAGGATGACGC
TGATGTTTTCTTAGGTGAATTagattctttgtttttgttcgCCTACGCTT
TTGGTTTATTCGTCAATGGTGCGTTAGGCGACCGCCTGAATCTACGATAT
TTCCTCGCCTTCGGCATGTGTGGTTCAGCTAtcgtcactttcattttcgg
tTATCTTGGAGCAGCTTACCACGTCCGAAAAACCATTTTTTATCAGATTC
TACAGTTCTTCAATGGTCTGTTGCAATCGATCGGATGGCCAGCTGTAGTA
AGTATTATGGGGAATTGGTTCTCAAAATCTTCAGCTGGATTTGTGTTCGG
GATCTGGTCGGCAAATGCGTCCGTTGGAAACATTATCGGTTCCGTAGTTC
TAGCTCAAGTGTTGAATTATGGTTACGAATATGGTATGTTGTTGAATTCT
TTAATTCTTTTTTGTGTCGGtttgattgttttgttttgcctCGTTGTCCA
CCCTAATGAGATCGGCCTCGAAAACCCCGATCAACAAGAACGCGTCGAAA
CTTTAGGACAGGAGGATAACGATCCTCTACTACCATCAAACAAAGTCGCC
GTACAACAACCAAAACCGATCAGTTTCATCCAAGCTGTTCTAATACCAGG
TGTGATCCCGTACTCGTTAGCGTACGCTTGTCTGAAGTTGGTTAACTATT
CGTTCTTCTTTTGGCTACCAACTTACCTCTCACAGGGTTTACACTGGAAA
GATGACAAGAGCGTCGAATTTTCAAACTTCTACGACATCGGTGGTATCTT
TGGAGGTATTATCGCGGGAATCGTTAGTGATTGTATCGGAGTTCGATCAC
CAGTTGTCGGCATCATGTTAGCGTTTTCCGTCGGTTCAATCCTATGTTTT
AATTATTTCTCGGGAGTTTACAATGTCACAGTCGCGATCTTATTCATTAA
TGGTTTTATGATCGGAGGTCCAGCCAATACAATTAGTACGGCAATCACAG
CTGATCTTGGAAAACACGAGAAAATCATGGGTAATGCTGAAGCTTTGGCA
ACAGTCACTGGCATCGTAGACGGGACTGGCTCTGTCGGCGCTGCCATTGG
CCAGTACCTTGTTGGGGTTATTAATAAGAAAGCTGGATGGCAATATGTGT
TTTATTTCTTGATCGTGATGACGGGCTTGAGTATCGTGTGTATTATTCCG
ATGTTAATCAACGAACTTAAATATCTGTTCCGAAGACGCCCAGACCCTAG
ACGATATTCGCCTATAGGCTCTCAAGCAGAACCCGAAGAAGTACGTTCGT
AA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_029854XLOC_029854Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00046786-proteinTCONS_00046786-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00046786-exon-scaffold_117-1491911889:492307..492342TCONS_00046786-exon-scaffold_117-1491911889:492307..492342Clytia hemisphaericaexon
TCONS_00046786-exon-scaffold_117-1510915933:492307..492342TCONS_00046786-exon-scaffold_117-1510915933:492307..492342Clytia hemisphaericaexon
TCONS_00046786-exon-scaffold_117-1575043694:492307..492342TCONS_00046786-exon-scaffold_117-1575043694:492307..492342Clytia hemisphaericaexon
TCONS_00046786-exon-scaffold_117-1491911889:496833..497116TCONS_00046786-exon-scaffold_117-1491911889:496833..497116Clytia hemisphaericaexon
TCONS_00046786-exon-scaffold_117-1510915933:496833..497116TCONS_00046786-exon-scaffold_117-1510915933:496833..497116Clytia hemisphaericaexon
TCONS_00046786-exon-scaffold_117-1575043694:496833..497116TCONS_00046786-exon-scaffold_117-1575043694:496833..497116Clytia hemisphaericaexon
TCONS_00046786-exon-scaffold_117-1491911889:498170..499779TCONS_00046786-exon-scaffold_117-1491911889:498170..499779Clytia hemisphaericaexon
TCONS_00046786-exon-scaffold_117-1510915933:498170..499779TCONS_00046786-exon-scaffold_117-1510915933:498170..499779Clytia hemisphaericaexon
TCONS_00046786-exon-scaffold_117-1575043694:498170..499779TCONS_00046786-exon-scaffold_117-1575043694:498170..499779Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_117supercontigscaffold_117:492307..499779 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
10.9162	11.0886	18.0252	15.6191	28.2735	21.1527	26.876	25.8794	26.1339	28.0562	24.7601	14.8433	15.9654	15.0427	27.276	24.1766	20.1455	18.549	18.589	22.2623	17.5122	17.3379	13.5594	15.6463	22.4677	24.8199	16.2157	9.98412	16.1549	18.5173
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000849Sugar_P_transporter
IPR011701MFS
IPR020846MFS_dom
Vocabulary: Molecular Function
TermDefinition
GO:0005215transporter activity
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
Vocabulary: Biological Process
TermDefinition
GO:0006810transport
GO:0055085transmembrane transport
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0055085 transmembrane transport
biological_process GO:0006810 transport
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0005215 transporter activity
Blast
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BLAST of TCONS_00046786 vs. Swiss-Prot (Human)
Match: SPX3 (Sugar phosphate exchanger 3 OS=Homo sapiens GN=SLC37A3 PE=2 SV=2)

HSP 1 Score: 424.091 bits (1089), Expect = 7.144e-141
Identity = 226/469 (48.19%), Postives = 312/469 (66.52%), Query Frame = 2 
Query:  134 HHLFVFVLTFMAYAAFHGCRKSFSNIKDELAENFTPN----TTYFPYDTWQKETTFANKDDADVFLGELDSLFLFAYAFGLFVNGALGDRLNLRYFLAFGMCGSAIVTFIFGYLGAAYHVRKTIFYQILQFFNGLLQSIGWPAVVSIMGNWFSKSSAGFVFGIWSANASVGNIIGSVVLAQVLNYGYEYGMLLNSLILFCVGLIVLFCLVVHPNEIGLENPDQQERVETL-------GQEDNDPLLPSNKV----AVQQPKPISFIQAVLIPGVIPYSLAYACLKLVNYSFFFWLPTYLSQGLHWKDDKSVEFSNFYDXXXXXXXXXXXXVSDCIGVRSPVVGIMLAFSVGSILCFNYFSGVYNVTVAILFINGFMIGGPANTISTAITADLGKHEKIMGNAEALATVTGIVDGTGSVGAAIGQYLVGVINKKAGWQYVFYFLIVMTGLSIVCIIPMLINELKYLFRRR 1495
            HH+ VF+LTF +Y+  H  RK+FSN+K  ++E +TP+    +   P + W     F + + A +FLG LD++FLF+YA GLF++G +GDRLNLR+ L+FGMC SA+V F+FG L           Y  L   NGLLQS GWP VV++MGNWF K+  G VFG+WSA ASVGNI+G+ + + VL YGYEY  L+ + + F  G+++ F L+V P EIGL   + +E  E         G E+ D   P+  +    +V Q K ISF QA  +PGVIPYSLAYACLKLVNYSFFFWLP YLS    WK+ ++ + S +YD+GGI GG + G +SD +  R+PV+ + L  +VGS++ ++      ++   ++ + GF IGGP+N IS+AI+ADLG+ E I  ++EALATVTGIVDG+GS+GAA+GQYLV +I  K GW +VFYF I+MT  +IV I P+++ E+  L  RR
Sbjct:   19 HHVVVFLLTFFSYSLLHASRKTFSNVKVSISEQWTPSAFNTSVELPVEIWSSNHLFPSAEKATLFLGTLDTIFLFSYAVGLFISGIVGDRLNLRWVLSFGMCSSALVVFVFGALTEWLRFYNKWLYCCLWIVNGLLQSTGWPCVVAVMGNWFGKAGRGVVFGLWSACASVGNILGACLASSVLQYGYEYAFLVTASVQFAGGIVIFFGLLVSPEEIGLSGIEAEENFEEDSHRPLINGGENEDEYEPNYSIQDDSSVAQVKAISFYQACCLPGVIPYSLAYACLKLVNYSFFFWLPFYLSNNFGWKEAEADKLSIWYDVGGIIGGTLQGFISDVLQKRAPVLALSLLLAVGSLIGYSRSPNDKSINALLMTVTGFFIGGPSNMISSAISADLGRQELIQRSSEALATVTGIVDGSGSIGAAVGQYLVSLIRDKLGWMWVFYFFILMTSCTIVFISPLIVREIFSLVLRR 487
The following BLAST results are available for this feature:
BLAST of TCONS_00046786 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
SPX37.144e-14148.19Sugar phosphate exchanger 3 OS=Homo sapiens GN=SLC... [more]
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