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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00046674 ID=TCONS_00046674|Name=TCONS_00046674|organism=Clytia hemisphaerica|type=transcript|length=5097bpRun BLAST on NCBI protein sequence of TCONS_00046674-protein >TCONS_00046674-protein ID=TCONS_00046674-protein|Name=TCONS_00046674-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1676bp TTTPAGTTTTTTDEITTTTPAGTTTTTPVEADGITTTTADGITTEAPSTARun BLAST on NCBI transcript from alignment at scaffold_116:721899..747817+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00046674 ID=TCONS_00046674|Name=TCONS_00046674|organism=Clytia hemisphaerica|type=transcript|length=25919bp|location=Sequence derived from alignment at scaffold_116:721899..747817+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_116:721899..747817+ >TCONS_00046674 ID=TCONS_00046674|Name=TCONS_00046674|organism=Clytia hemisphaerica|type=CDS|length=135837bp|location=Sequence derived from alignment at scaffold_116:721899..747817+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00046674 vs. Swiss-Prot (Human)
Match: HMCN1 (Hemicentin-1 OS=Homo sapiens GN=HMCN1 PE=1 SV=2) HSP 1 Score: 110.153 bits (274), Expect = 9.443e-24 Identity = 91/282 (32.27%), Postives = 122/282 (43.26%), Query Frame = 2
Query: 1643 WSPWSECSATCNG-TRSRERTCF--------STCTGPEKEFESCGAGSCPIHGGISQWSSWTNCDVTCXXXXXXXXXACDNPEPKYDGNDCVASLEQSDDCGVINCPVDATWAEWSPWSSCDKACNTGHYVRRRNCN---PANYGGIPCSSIPGEPTAEAPCNEFPC----NRTYANLVLHFNQDYESGM--------EDPNTFEYIFFRESLRAEINSVYEDGGEVMQNEVLGVD----CHNLEEGSVIANFTINYASMDKEQFLFFQ--DILETS-IAVG 2395
W+ WS CS +C G R R R C C G + + + C + CP HG S WS W C TC GG+ R R CDNP P G C Q C CPVD +W W WS C +C G R+R C+ P GG PC PG+ T CN C R +++ + N D E G+ + PN+ I +RA+I +V G M+ V ++ E G + FT+ A +E + F +IL+ S IA G
Sbjct: 4706 WASWSACSVSCGGGARQRTRGCSDPVPQYGGRKCEGSDVQSDFCNSDPCPTHGNWSPWSGWGTCSRTCNGGQMRRYRTCDNPPPSNGGRACGGPDSQIQRCNTDMCPVDGSWGSWHSWSQCSASCGGGEKTRKRLCDHPVPVK-GGRPC---PGDTTQVTRCNVQACPGGPQRARGSVIGNIN-DVEFGIAFLNATITDSPNSDTRI-----IRAKITNVPRSLGSAMRKIVSILNPIYWTTAKEIGEAVNGFTLTNAVFKRETQVEFATGEILQMSHIARG 4977 HSP 2 Score: 110.153 bits (274), Expect = 9.932e-24 Identity = 65/163 (39.88%), Postives = 83/163 (50.92%), Query Frame = 2
Query: 1598 RLCNCLGADDVGFGGWSPWSECSATC-NGTRSRERTC--------FSTCTGPEKEFESCGAGSCPIHGGISQWSSWTNCDVTCXXXXXXXXXACDNPEPKYDGNDCVASLEQSDDCGVINCPVDATWAEWSPWSSCDKACNTGHYVRRRNCN--PANYGGIPC 2053
R C GA + W PW CS +C GT++R R C S C G E + + C +CPIHG + W+SW+ C V+CGGG RTR C +P P+Y G C S QSD C CP W+ WS W +C + CN G R R C+ P + GG C
Sbjct: 4638 RPCPVHGA----WSAWQPWGTCSESCGKGTQTRARLCNNPPPAFGGSYCDGAETQMQVCNERNCPIHGKWATWASWSACSVSCGGGARQRTRGCSDPVPQYGGRKCEGSDVQSDFCNSDPCPTHGNWSPWSGWGTCSRTCNGGQMRRYRTCDNPPPSNGGRAC 4796 HSP 3 Score: 101.679 bits (252), Expect = 3.715e-21 Identity = 62/170 (36.47%), Postives = 79/170 (46.47%), Query Frame = 2
Query: 1631 GFGGWSPWSECSATC-NGTRSRERTC--------FSTCTGPEKEFESCGAGSCPIHGGISQWSSWTNCDVTCXXXXXXXXXACDNPEPKYDGNDCVASLEQSDDCGVINCPVDATWAEWSPWSSCDKACNTGHYVRRRNCN--PANYGGIPCSSIPGEPTAEAPCNEFPC 2107
GF WS W CS TC G + R R C C G + E +C CP+ G S+WS W C +CG G TRTR C+NP ++ G C + + C + CPV W+ W PW +C ++C G R R CN P +GG C G T CNE C
Sbjct: 4531 GFSQWSAWRACSVTCGKGIQKRSRLCNQPLPANGGKPCQGSDLEMRNCQNKPCPVDGSWSEWSLWEECTRSCGRGNQTRTRTCNNPSVQHGGRPCEGNAVEIIMCNIRPCPVHGAWSAWQPWGTCSESCGKGTQTRARLCNNPPPAFGGSYCD---GAETQMQVCNERNC 4697 HSP 4 Score: 97.8265 bits (242), Expect = 5.285e-20 Identity = 61/166 (36.75%), Postives = 77/166 (46.39%), Query Frame = 2
Query: 1643 WSPWSECSATC-NGTRSRERTCFST--------CTGPEKEFESCGAGSCPIHGGISQWSSWTNCDVTCXXXXXXXXXACDNPEPKYDGNDCVASLEQSDDCGVINCPVDATWAEWSPWSSCDKACNTGHYVRRRNC-NPA-NYGGIPCSSIPGEPTAEAPCNEFPC 2107
WS W EC+ +C G ++R RTC + C G E C CP+HG S W W C +CG G TR R C+NP P + G+ C + Q C NCP+ WA W+ WS+C +C G R R C +P YGG C G CN PC
Sbjct: 4592 WSLWEECTRSCGRGNQTRTRTCNNPSVQHGGRPCEGNAVEIIMCNIRPCPVHGAWSAWQPWGTCSESCGKGTQTRARLCNNPPPAFGGSYCDGAETQMQVCNERNCPIHGKWATWASWSACSVSCGGGARQRTRGCSDPVPQYGGRKCE---GSDVQSDFCNSDPC 4754 HSP 5 Score: 88.1965 bits (217), Expect = 3.963e-17 Identity = 48/116 (41.38%), Postives = 60/116 (51.72%), Query Frame = 2
Query: 1766 IHGGISQWSSWTNCDVTCXXXXXXXXXACDNPEPKYDGNDCVASLEQSDDCGVINCPVDATWAEWSPWSSCDKACNTGHYVRRRNCN--PANYGGIPCSSIPGEPTAEAPCNEFPC 2107
+HGG SQWS+W C VTCG G R+R C+ P P G C S + +C CPVD +W+EWS W C ++C G+ R R CN +GG PC G CN PC
Sbjct: 4528 VHGGFSQWSAWRACSVTCGKGIQKRSRLCNQPLPANGGKPCQGSDLEMRNCQNKPCPVDGSWSEWSLWEECTRSCGRGNQTRTRTCNNPSVQHGGRPCE---GNAVEIIMCNIRPC 4640 The following BLAST results are available for this feature:
BLAST of TCONS_00046674 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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