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Sequence
The following sequences are available for this feature:
polypeptide sequence >TCONS_00046674-protein ID=TCONS_00046674-protein|Name=TCONS_00046674-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1676bp
TTTPAGTTTTTTDEITTTTPAGTTTTTPVEADGITTTTADGITTEAPSTA
TTTPGTTIAPVNGYWTDFELYEDSKCSKTCGLGIILKKGVCVPPVGNGAP
CDPGLDIKAFDCNPHACPEPCDLPNSPPGFFKFGSKCIKIEEENVILNYV
EGLAHCAKEYGGELLTLHSAEETTKIFDYVGNVDNFLTASTDKLQQGILT
WQDGFSGSPVDYITQSPGDNKHCLRLNGERQMLEWSRCGNKVNRVICQLR
EAMSDCTKQNGFQYKTKCYREFNDGQPSHAESADICKGWNSTATLFMPDS
GEEIDFIKDYMAATEYAVWVDGTDLETEGSLVWRDSRVRNHVTIETGSNT
VNKDCLKYWFKFQYSLCESDQPQWKKKTLCQIGSDEIVSAWSPWSDCPLT
CKRGKMKRTRMCYYENKHDIEKDTCEGLPLTEEEDCLVRENCGSGYYLAD
PGLSCAQFCPTQDGMGCLANIETGNSANGFDDVILSYTTDASRATWQRPY
GPGCLAGDICVEYQDVPEEVSCDEVPVTAGYRRLCNCLGADDVGFGGWSP
WSECSATCNGTRSRERTCFSTCTGPEKEFESCGAGSCPIHGGISQWSSWT
NCDVTCGGGRTTRTRACDNPEPKYDGNDCVASLEQSDDCGVINCPVDATW
AEWSPWSSCDKACNTGHYVRRRNCNPANYGGIPCSSIPGEPTAEAPCNEF
PCNRTYANLVLHFNQDYESGMEDPNTFEYIFFRESLRAEINSVYEDGGEV
MQNEVLGVDCHNLEEGSVIANFTINYASMDKEQFLFFQDILETSIAVGKM
ELVNGMNMSLTIGPDLLSEPPPNVTAHSPSPEVLIISWDAIQNTDLDAYV
VFYRERLLSSQPYFKYATVNTSAHLTWLKPGTEYVYRVLGYSVAKGNGIA
SMLDAVWTMEKLPQVSPSNVTAEGSGPFEVYLTWVRVPDDQMNGIPLGYN
IYAYHNGAYVSNETAPFDYSGWSFTNELEPSTSYVFDVCAFNSAGDSPCD
RANARTLDSAPSAPPQNIYISSIKTQSQLTIHWSPPPPDRIHGDLLAYKL
KVFAMKTGADVYIDPKVDVYDIHPGFTSYTLRFLTTNTFYSFEILAVNQF
GEGVSDEVVGRTCPCPAVVSSNFYLYAPYLTRDSEGKLASVFGDVLDAAI
LATCGVCNTPNGPVYTKLDKMRNGRLEFAEKSLELKVLKEVDEYTDLSFP
IIGNTYSDEMVGYPFVPLVGHPGVVAIVRDKNINEIVMEMIMMILGIYPL
IGLNLLMMIAAGYVVWLLEACNSDEGSVDFSNSWIRGIYEGWYWAFITQG
THGYGDFAPTKVGARIFAMIWALVGLVMTGIVIGAIVTALTTVNGAAQFK
IYGSQVGALNGTFEAKLGLLRNGKVNEKKAYLTVEELRDALLNKDVEGVL
LDAYTAGANADLFADERLRAATLLEYPRSYGFVLSGGLRSVAAEFKSFMK
SDEDRILSILTNSTEPMGVAPPAELKSPFDPESSILATALISMTVMLVVF
SILGFIWSHFLKKINAKKEQILDPKDVLAMCNLLVEDFKVTMDSKMVDLE
DKHLLQRELLYKDYHGHSAIEHHKMNGDKLQKMLDTKLMQNRVAPCPDSE
QLVDEMETGRLSVASSVASSVMSKHILETSMDEETNVESEQTPPVTETPI
ESFDDEQYEEFENSEDEIDQQNNASP Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
This polypeptide derives from the following transcript feature(s):
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0005515 | protein binding |
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0005515 |
protein binding |
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
| IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
|---|
| IPR000884 | Thrombospondin type-1 (TSP1) repeat | SMART | SM00209 | TSP1_2 | coord: 650..703
e-value: 5.2E-10
score: 49.3
coord: 545..588
e-value: 4.0E-7
score: 39.7
coord: 65..118
e-value: 0.13
score: 17.3
coord: 388..443
e-value: 6.4E-6
score: 35.7
coord: 593..645
e-value: 1.0E-11
score: 54.9 |
| IPR000884 | Thrombospondin type-1 (TSP1) repeat | GENE3D | 2.20.100.10 | | coord: 59..114
e-value: 5.4E-5
score: 23.0 |
| IPR000884 | Thrombospondin type-1 (TSP1) repeat | GENE3D | 2.20.100.10 | | coord: 590..644
e-value: 1.4E-13
score: 50.4
coord: 646..702
e-value: 6.8E-10
score: 38.6 |
| IPR000884 | Thrombospondin type-1 (TSP1) repeat | PFAM | PF00090 | TSP_1 | coord: 652..686
e-value: 4.7E-6
score: 26.6
coord: 389..418
e-value: 2.1E-6
score: 27.8
coord: 74..102
e-value: 0.044
score: 13.9
coord: 594..643
e-value: 6.7E-10
score: 38.9
coord: 547..587
e-value: 9.5E-6
score: 25.6 |
| IPR000884 | Thrombospondin type-1 (TSP1) repeat | PROSITE | PS50092 | TSP1 | coord: 647..703
score: 10.895 |
| IPR000884 | Thrombospondin type-1 (TSP1) repeat | PROSITE | PS50092 | TSP1 | coord: 542..588
score: 11.294 |
| IPR000884 | Thrombospondin type-1 (TSP1) repeat | PROSITE | PS50092 | TSP1 | coord: 590..645
score: 12.268 |
| IPR000884 | Thrombospondin type-1 (TSP1) repeat | PROSITE | PS50092 | TSP1 | coord: 385..443
score: 10.351 |
| IPR000884 | Thrombospondin type-1 (TSP1) repeat | SUPERFAMILY | 82895 | TSP-1 type 1 repeat | coord: 385..439 |
| IPR000884 | Thrombospondin type-1 (TSP1) repeat | SUPERFAMILY | 82895 | TSP-1 type 1 repeat | coord: 59..117 |
| IPR000884 | Thrombospondin type-1 (TSP1) repeat | SUPERFAMILY | 82895 | TSP-1 type 1 repeat | coord: 587..644 |
| IPR000884 | Thrombospondin type-1 (TSP1) repeat | SUPERFAMILY | 82895 | TSP-1 type 1 repeat | coord: 644..702 |
| IPR000884 | Thrombospondin type-1 (TSP1) repeat | SUPERFAMILY | 82895 | TSP-1 type 1 repeat | coord: 545..582 |
| IPR003961 | Fibronectin type III | SMART | SM00060 | FN3_2 | coord: 914..997
e-value: 0.0056
score: 25.9
coord: 1011..1103
e-value: 2.1E-7
score: 40.6
coord: 818..898
e-value: 7.3E-5
score: 32.1 |
| IPR003961 | Fibronectin type III | PFAM | PF00041 | fn3 | coord: 1014..1103
e-value: 1.9E-9
score: 37.6
coord: 820..894
e-value: 2.7E-7
score: 30.7 |
| IPR003961 | Fibronectin type III | PROSITE | PS50853 | FN3 | coord: 1014..1116
score: 15.558 |
| IPR003961 | Fibronectin type III | PROSITE | PS50853 | FN3 | coord: 916..1009
score: 13.255 |
| IPR003961 | Fibronectin type III | PROSITE | PS50853 | FN3 | coord: 820..911
score: 13.413 |
| IPR003961 | Fibronectin type III | CDD | cd00063 | FN3 | coord: 917..998
e-value: 4.58318E-6
score: 45.5651 |
| IPR003961 | Fibronectin type III | CDD | cd00063 | FN3 | coord: 819..908
e-value: 2.37458E-7
score: 49.4171 |
| IPR003961 | Fibronectin type III | CDD | cd00063 | FN3 | coord: 1014..1112
e-value: 2.70194E-10
score: 58.2767 |
| IPR003961 | Fibronectin type III | SUPERFAMILY | 49265 | Fibronectin type III | coord: 819..998 |
| IPR003961 | Fibronectin type III | SUPERFAMILY | 49265 | Fibronectin type III | coord: 976..1112 |
| IPR001304 | C-type lectin-like | SMART | SM00034 | CLECT_2 | coord: 126..248
e-value: 2.6E-7
score: 40.3
coord: 256..381
e-value: 3.0E-5
score: 33.4 |
| IPR001304 | C-type lectin-like | PFAM | PF00059 | Lectin_C | coord: 279..377
e-value: 8.6E-6
score: 26.4 |
| IPR001304 | C-type lectin-like | PROSITE | PS50041 | C_TYPE_LECTIN_2 | coord: 264..368
score: 9.703 |
| None | No IPR available | GENE3D | 1.10.287.70 | | coord: 1245..1400
e-value: 2.0E-17
score: 62.5 |
| None | No IPR available | GENE3D | 2.30.90.10 | | coord: 387..436
e-value: 6.3E-9
score: 35.8
coord: 544..589
e-value: 8.4E-7
score: 29.0 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 1..30 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 1628..1676 |
| None | No IPR available | CDD | cd00037 | CLECT | coord: 136..248
e-value: 2.20381E-4
score: 40.2958 |
| None | No IPR available | CDD | cd00037 | CLECT | coord: 267..335
e-value: 1.04235E-5
score: 44.533 |
| None | No IPR available | SUPERFAMILY | 81324 | Voltage-gated potassium channels | coord: 1238..1344 |
| IPR013783 | Immunoglobulin-like fold | GENE3D | 2.60.40.10 | | coord: 915..1011
e-value: 5.8E-12
score: 45.3 |
| IPR013783 | Immunoglobulin-like fold | GENE3D | 2.60.40.10 | | coord: 817..914
e-value: 5.4E-11
score: 42.1 |
| IPR013783 | Immunoglobulin-like fold | GENE3D | 2.60.40.10 | | coord: 1012..1119
e-value: 4.8E-14
score: 52.0 |
| IPR016186 | C-type lectin-like/link domain | GENE3D | 3.10.100.10 | | coord: 255..386
e-value: 3.4E-7
score: 29.9 |
| IPR016186 | C-type lectin-like/link domain | GENE3D | 3.10.100.10 | | coord: 115..251
e-value: 5.4E-12
score: 45.3 |
| IPR013099 | Potassium channel domain | PFAM | PF07885 | Ion_trans_2 | coord: 1268..1341
e-value: 9.3E-9
score: 35.0 |
| IPR016187 | C-type lectin fold | SUPERFAMILY | 56436 | C-type lectin-like | coord: 124..250 |
| IPR016187 | C-type lectin fold | SUPERFAMILY | 56436 | C-type lectin-like | coord: 259..361 |
Blast
BLAST of TCONS_00046674-protein vs. Swiss-Prot (Human)
Match: HMCN1 (Hemicentin-1 OS=Homo sapiens GN=HMCN1 PE=1 SV=2) HSP 1 Score: 136.732 bits (343), Expect = 7.158e-32 Identity = 128/468 (27.35%), Postives = 180/468 (38.46%), Query Frame = 0
Query: 389 SAWSPWSDCPLTCKRGKMKRTRMCYYE---------NKHDIEKDTCEGLPLTEE---------EDCLVRENCGSGYYLADPGLSCAQFCPTQDGMGCLANIETGNSANGFDDVILSYTTDASRATWQRPYGPGCLAGDICVEYQDVPEEVSCDEVPVTAG--------YRRLCNCLGADDVG-FGGWSPWSECSATCNG-TRSRERTCF--------STCTGPEKEFESCGAGSCPIHGGISQWSSWTNCDVTCGGGRTTRTRACDNPEPKYDGNDCVASLEQSDDCGVINCPVDATWAEWSPWSSCDKACNTGHYVRRRNCN---PANYGGIPCSSIPGEPTAEAPCNEFPC----NRTYANLVLHFNQDYESGM--------EDPNTFEYIFFRESLRAEINSVYEDGGEVMQNEVLGVD----CHNLEEGSVIANFTINYASMDKEQFLFFQ--DILETS-IAVG 798
S WS W C +TC +G KR+R+C D+E C+ P + E+C +CG G +C G C GN+ I + + WQ P+G + C + + + P G ++CN G + W+ WS CS +C G R R R C C G + + + C + CP HG S WS W C TC GG+ R R CDNP P G C Q C CPVD +W W WS C +C G R+R C+ P GG PC PG+ T CN C R +++ + N D E G+ + PN+ I +RA+I +V G M+ V ++ E G + FT+ A +E + F +IL+ S IA G
Sbjct: 4533 SQWSAWRACSVTCGKGIQKRSRLCNQPLPANGGKPCQGSDLEMRNCQNKPCPVDGSWSEWSLWEECT--RSCGRGNQTRT--RTCNNPSVQHGGRPC-----EGNAVEIIMCNIRPCPVHGAWSAWQ-PWG---TCSESCGKGTQTRARLCNNPPPAFGGSYCDGAETQMQVCNERNCPIHGKWATWASWSACSVSCGGGARQRTRGCSDPVPQYGGRKCEGSDVQSDFCNSDPCPTHGNWSPWSGWGTCSRTCNGGQMRRYRTCDNPPPSNGGRACGGPDSQIQRCNTDMCPVDGSWGSWHSWSQCSASCGGGEKTRKRLCDHPVPVK-GGRPC---PGDTTQVTRCNVQACPGGPQRARGSVIGNIN-DVEFGIAFLNATITDSPNSDTRI-----IRAKITNVPRSLGSAMRKIVSILNPIYWTTAKEIGEAVNGFTLTNAVFKRETQVEFATGEILQMSHIARG 4977 HSP 2 Score: 122.094 bits (305), Expect = 2.205e-27 Identity = 62/170 (36.47%), Postives = 79/170 (46.47%), Query Frame = 0
Query: 544 GFGGWSPWSECSATC-NGTRSRERTCFST--------CTGPEKEFESCGAGSCPIHGGISQWSSWTNCDVTCGGGRTTRTRACDNPEPKYDGNDCVASLEQSDDCGVINCPVDATWAEWSPWSSCDKACNTGHYVRRRNCN--PANYGGIPCSSIPGEPTAEAPCNEFPC 702
GF WS W CS TC G + R R C C G + E +C CP+ G S+WS W C +CG G TRTR C+NP ++ G C + + C + CPV W+ W PW +C ++C G R R CN P +GG C G T CNE C
Sbjct: 4531 GFSQWSAWRACSVTCGKGIQKRSRLCNQPLPANGGKPCQGSDLEMRNCQNKPCPVDGSWSEWSLWEECTRSCGRGNQTRTRTCNNPSVQHGGRPCEGNAVEIIMCNIRPCPVHGAWSAWQPWGTCSESCGKGTQTRARLCNNPPPAFGGSYCD---GAETQMQVCNERNC 4697 HSP 3 Score: 102.449 bits (254), Expect = 1.764e-21 Identity = 48/116 (41.38%), Postives = 60/116 (51.72%), Query Frame = 0
Query: 589 IHGGISQWSSWTNCDVTCGGGRTTRTRACDNPEPKYDGNDCVASLEQSDDCGVINCPVDATWAEWSPWSSCDKACNTGHYVRRRNCN--PANYGGIPCSSIPGEPTAEAPCNEFPC 702
+HGG SQWS+W C VTCG G R+R C+ P P G C S + +C CPVD +W+EWS W C ++C G+ R R CN +GG PC G CN PC
Sbjct: 4528 VHGGFSQWSAWRACSVTCGKGIQKRSRLCNQPLPANGGKPCQGSDLEMRNCQNKPCPVDGSWSEWSLWEECTRSCGRGNQTRTRTCNNPSVQHGGRPCE---GNAVEIIMCNIRPC 4640
The following BLAST results are available for this feature:
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