TCONS_00046288 (transcript) - C. hemisphaerica

Overview
NameTCONS_00046288
Unique NameTCONS_00046288
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length871

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00046288 ID=TCONS_00046288|Name=TCONS_00046288|organism=Clytia hemisphaerica|type=transcript|length=871bp
AATATGTTACCTCCATAATATCAATGGGTGTTTGACGGTACTTTCGAGTT
TTGGTCGTGTTTACGTTTTATTATGGGGATAATAGTTTGGTCGAGCCTGG
CTGAAAGCTTTCTAATGCAAAATGGTGCCAGTGAATCGATAAACTTTCAG
GAGGGTAtcgaaatatttttccgttactTATTTTTATATTGCCCTTTATA
GATTAGTTTTTACATTCATGCATACACAAATAACATAGTGGCTTGTCCGA
AAACATTACAATACGTGTAAATGGATGGAGCTGGAAAATATCGTCGCCAA
TACTGTCTATTTGAAAGCAAGAGAAAgtCGAGCTAAAGGCAAGAGTAAGA
AATGGCGACATATGCTTCAATTTCCCCACATTTCCCAATGTTCACAAATC
AAAAACACATTAGacttgagCTTCCACAATCTGTGTGAAAAGGAGCCCAT
CGGCAAAGAATTATTCAAACAATTTTGTAGAGTCAACCCAAAAACAAACC
AACTGGTCCGATTTCTAGAATCCACAgaaGATTTTAAATCAAGCATTGAT
AGTGAACGACCTGAAAAGGCCAGGACAGTTGTAGCACAATATCTTATGAT
AGAGGATAAGGAGAGTATCTTTGAAGGTGTCATCTCAATGGAAACGGTAG
AAGATGCACGGCGTATGTCCGTCAACGTACCAACTGCAACCGTCTTCACC
CAGTGCGCAAAGGAAGTACGGAACTACCTGAAAGCGCGTCCATATGAAGA
TTATTTGAATAGTTATTATTTCAAACGTTATTTGCAATGGAAATCGTTAG
AACGAATGCCAGTTTCCAAGAATCTCTTCCGTCATTATCGCGTACTGGGG
AAAGGTGGCTTTGGCGAGGTN
Run BLAST on NCBI

protein sequence of TCONS_00046288-protein

>TCONS_00046288-protein ID=TCONS_00046288-protein|Name=TCONS_00046288-protein|organism=Clytia hemisphaerica|type=polypeptide|length=199bp
MELENIVANTVYLKARESRAKGKSKKWRHMLQFPHISQCSQIKNTLDLSF
HNLCEKEPIGKELFKQFCRVNPKTNQLVRFLESTEDFKSSIDSERPEKAR
TVVAQYLMIEDKESIFEGVISMETVEDARRMSVNVPTATVFTQCAKEVRN
YLKARPYEDYLNSYYFKRYLQWKSLERMPVSKNLFRHYRVLGKGGFGEX
Run BLAST on NCBI

transcript from alignment at scaffold_108:362516..375810-

Legend: exonfive_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00046288 ID=TCONS_00046288|Name=TCONS_00046288|organism=Clytia hemisphaerica|type=transcript|length=13295bp|location=Sequence derived from alignment at scaffold_108:362516..375810- (Clytia hemisphaerica)
AATATGTTACCTCCATAATATCAATGGGTGTTTGACGGTACTTTCGAGTT
TTGGTCGTGTTTACGTTTTATTATGGGGATAATAGTTTGGTCGAGCCTGG
CTGAAAGCTTTCTAATGCAAAATGGTGCCAGTGAATCGATAAACTTTCAG
GAGGGTATCGAAATATTTTTCCGTTACTTATTTTTATATTGCCCTTTATA
GATTAGTTTTTACATTCATGCATACACAAATAACATAGTGGCTTGTCCGA
AAACATTACAATACGTGTAAATGGATGGAGCTGGAAAATATCGTCGCCAA
TACTGTCTATTTGAAAGCAAGAGAAAGTAAGATTTTTAAGCATCATTGTT
GTTCTTTTTCTCCTGCTGGTTTGGTGACTATATTTACTTTTCTTTGCTGT
GCACCTCAATTACTTGAATTTATCTCCAATGGGTCTGAAACCTATTTCAT
ATTGATGAATTTGATCTTTGATCAGAAGCGTATGGTCTTTTCCCCTGCAG
TATCATCACCCATAGACCTTTTTTTAAAGAGGCAGCCATGTTGAAAATTA
TGTACTCCAGCATAAAAACAATGATACAGCCATGCATAATAACTGTATCA
TGCATATTTTAAAAATTATGCATGGCTGTATCATTGTTTTTATGCTGGAG
TACATAATAATTATTCACAACATGGCTGCCTCTTTAAAAATAGGTCTATG
CCGCAGACTCAGTTAAGCTCACTTCCTGTTTAGGCATTTGATAAGGCTCC
CCTGGTCTGCTGTAGCACACAGTTGGAGTAAATTAGTATATAGTAGTTAG
TGCACGGTTATTTGTTGTTCGGAGATATTTTTATTATAGTATTATTTAGA
GATATTTGCTATGCTATATTATGCATGCAGACATTGCCATATTCCCTTAT
AACGGTGTATACATCAATAGCGTTTAAATTAATACTACTTCAGTCTGGGG
AATACTCTCAATTACACACGCTCAACTTCCAAGATCTAAATGAGCCATTC
CAGAAAATTTTTGATACCCCTGTCCGGGCGACGTGCATTTAAAAAAAATT
TCTAGCCTCAGAAATATTTTTTTTATCCAGCAGTGTAGACCTAACTCTTC
ATACAAAAATTACGGGAAACGCATATTTGGACTTTGTACCCTCTGCTGCA
CTAAAGCACTTGGGCCAAAATCCCGCAAAGGCGGGACAAAAATCAGTTTT
TTAAAGTTTGCAAAAAAACGCCACATAGAAGATCTTTCAAATTCAGTATG
TGAATAGAGCAGTAAAAAATACAANNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNTTGAATACTATCCATTGATGATCCGCGGCACTATCGTAA
AGCTAGAATCGCTTCGCGTACTCTTCGCTTGAGAAAATGATTGACAGATT
GAAGTTTTTCATCCCCATGGTGCGTGCTGCGCGGGAGCTCGGGCGCTCTG
CGAGAGTTCTCGGCTCAATCCTCGGACCGCGCTAAAATGGTAGACTGAGC
TGTGATAGATCATTTCGATGGAAGTTGTTGGAATGTTTACAAGGCTCTTG
ACAGAATATTGTTTGTTTTATTGTCAATGATGACAGTCCGTTATAAATTT
TGTTAGATCCGACAAATTGATGTTTGTAAGTGCACTTTATAGTTTTGATT
CCCATTGAAGAATAATCATATTCTGGTTTTCATGTTATTAGATGCTGTTT
TAGAGCTTTAGAGCTACACTGTCCAGTGGTGGTCGGAAATTCCGGCAGGT
ACAAAATGCATAAAACATAATGCATATTGCATAATAGTATTGTGTAATTT
CCAGAACGTTTTTATATTTTCTAAAACTCTCCTTTGTAGAGGCAAAACCG
CGAAAACCTCTTTTTAGAAGTAAACATCCCCAATCAGAGGGATTGGACAT
GTTCATAAAATATAGGGCGAAATGTTACACTTTGCACCATTGATTTTTAA
TTTGTTATTGATTTATCACTCATTCTTTTCAAGACAAAAGACTTTGGTTT
TTCAATTGTAAATAGATGATATTTTGTAACTGTCCAGGTTAGATTTCTAA
ATAATAAGCGAGGCTTAAGATATNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNTGATAAAACTGAAACATTGGTTTATTTTCCAATAA
TCAAATAAATTCCTGATAAATAAGTAACAGTTACTTTTTGATCCCATATC
TTTTCAGGAAGGGTGTTATATTACTTGCCTAAAGCTACTGCCACATTACC
AATGCTTCAAAATTATCTTTGTTTTTACAGAATTGTAAATGATCCATTAG
AACCTTAATAATTGATAATTTAGTAACAAAGTTGCAATTTTATCATTTTC
CTTGTTTGAGGAGGATATTTTTGAAATTTTTTGATGCAGTCCTTTTTGTT
ACATCTATCGCCATTTTCACCAATTTTCAGCAAGATTACTGCAATACTTA
CCAAGTTATTGATAAAAATGTAAAAAAGCCATTTTTCAATGTGTAACATT
TCGCCCTATGTTTTATGAACATGTCCGATTTCCCCAGACATTTATTTTTC
AAATCTGAACGAAAGAGAAACATTTGAATCATAACAACAAAGGGTTTTCC
ATCAGCATAAATAATAAGAAGATGCAACAGATCAGAAAGGTTTCCCCCTT
CTTTTTATCATAAAAAAGGTAAACACATAAACATTCGAATGTAAGAAAAT
TCGAAGTCTATTTTCTTAGATCTAGCTCTTGCATGAAGCTCTCTAATTAT
ATTGGCTGGATATTGGCTTATTTAACAAAAAGCATTCATGGTTAATGCTT
TGTAAGAGGGAAAACCCGTTGAAACAGGTTGAAATTTATTATCAATTGTT
CGAAAAGACCTCTGAGAAAACCAAGAATAAAGATTTGCTATAAAATTTAC
GTTTTCAAGTTAGAAAAGTAATATACGGAGGAGATGTTTTTGTGTTTTTT
TCTACACTATACTACGTTCTGTAAAATACAACTATGAAAATCAAGATGGC
GACAAGCATTTTCAGTGGATCATTGATTTTCTTCATCATCCAAAATTCAA
ATTTACAGCTTTGTACCCTTTATTTTCTGGCAGAAAGTGGTATATTTGTT
TTGTTAAAAGTATTATCTTTCAAATTCTCCTTATTATAGCCTCTAAAATT
GACATTTTTCAAATATTATGCATTATGCATTATGCAATATGCATTATGTT
TTATGCATATTGGACCTGTCAACAGAAATTCCGACGAAAATCCATGTACT
TTTGCAAAATGCATAGAAAATTCCACTCTTTTTTGCCTTTTTTAATTCAA
TTGCCTTGGAAATTCATACATTTTCTTCTCTTGTGGAAATTTCAAATTTT
GTGAAAACTTTTTCCCTCAGAAATCCTGTGTCGTCCGCCCCCTGTTACAG
ACAAATTCTGGTTCAATTCAAGTTTTTACCTGTGAAGAAAATGATGCCAT
AAAAGACTTGAACCTGTTTGACCATGTATGTGCCTGATATGAAAAAAATC
TAAACCCTGCTCGTCTGTCCAAGTAATCTCAACCAGTGAAGGATTATAAA
CACACAATTGCATTTAGGTGTAAATTGTATATAACTGCACCAATTGCACG
CTTCCATTAGAAGTTAAGCGTGTTATATTAAGAGGATATCTCAGACTGTA
CGTAGCTACAAACTTAAATCAGAGGGCTATACAAAAAGTACCGTAACTTC
ATGTAATGCGGACATACCTTGTCTAATTCCGTCATAACAAACAACATCTG
GTCAGCAATGTACTATTCTCAGAAGGTCTTATTTATAAACATTCAAAAGG
CCAGATAGTTGCCATTACACCAAGTTACGGTACTTTTGTCACCTAGGGGG
AGGGGGTTCAGCCAGAAGGCGAGGGGGAGGAGTCAATTGTATGTTCCCTT
TTGAAGAGGGGGTCCTGCTGCAATCTTGATTTGATAGTAGTAAACAATTT
TTTTCATTTTTACCAATTTTAATTTCTTTTCTTTACTGATCACTCTTTTC
ATTTAAATCATAGACCTGACCAACCATTATTGTTATAAATGGTGTTCTAT
TCATAATGTAAAGAGAGGTCTCTCTGAACCCCCNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNCCCCCCCCCCCTAAAATCTCAAATCCCCCA
TTTTATTTGGAAAATCTCCTTCTGGAAAAGTTGGATCCCCCCAAAAAGGG
GGGCTCACACAGTATGCTATTATTACAAAGATTGACCAATTATCAAGTTT
GAAAATATTCTGTTTAGTTTTCGAATATATGATTATCTTCTTAAGACAAT
TTTATAAACTCGATAATCATTTTCATCTTTCATAAGTGTAAAATTGAAAC
TTTCAAAATTGGAGCCTAGGCCATGGTTTCAGCCCACTTTCCAGGTACCC
CCAAGCATTTTACCCCCAACGAGTTAGGTGCCCTTGAGAAATTGCTTTGA
GAGGTATGCCCATTCAGCCGATAATTTTTTTAACAATCACATTTAAAAAA
TTTGATTGGAAACTGGGCGCTGGGGTAAAAAATTCAATTACTTTGAAATA
TTTTGAGATATTCAATTTGGAAAATATACACAGCCCTCAGAGCCTTCATC
AAAACAGCTAGGTAACCCCAAAGAATTGCAAAATATTAACCTCCAACCAC
TAACCTCGCCTAGATACCCTTCAGATTTCTGGGGGGGCTGACACTATTAG
GGGGTCAGAAATCTAAAATTAAAAGCAAACATGCTGAGGGGGGTTATTTT
GAAAATGAACACAGGCAAACAGAGAAGGAGGGAGTTTTAAATATAAATGA
AGATGGAAGATGTACTTTTTGAATGCGAGCTTTAGAGAACCACTTTACGG
TTTTCGTTGCTGCAAACATTGGCTATAAAGTACTGTTTACACTTGAAATA
AATAATGAAAATTGAATGTTCACTATTCTAAGACTGAATAAAGCCCTTCT
TTCAATGACAAGTCTCTGAGTAACCACAAATTTGCTACCATTTTGCTTTA
TTAGCATGACAGACAGACTGACAGAATATGAAATTCTTTTAGTATAGCAA
GATTTCCTATTTTCAAACTAAATTGAACATCCATTTAGCTACACTCGCTT
GCATAGTGTCTAACCCCCCTTCTTGGCATTCTCCAACCTTTTAAAATGCT
TATCCAAATCCCCCAAGAGATAAACTTTTCTCTTTTTTTTTGACTCTGAC
TTAAAACAGAAAACTTCCTTTCATTCATACAGACTAAATTTCATAACAGT
GCTTGAAAATAATCTACAATATAAACAAATATAAACGCCTTTCCCTTTTT
CATCGTGAGAATGCCACATAAAGATAGTAATTTACCATCAATCATCTTTT
ACAGTTCTATATATTCTGAGGTCCTACGCATTGCTAGATGNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNTTCAAGCGCATGCTCGATCAGGGAGCTGAAAGATCTTTCTTGCGAAAA
CAAATAGTAAAGTGTTTTGATAGATTTCCAGAGACTTTTATGAAATTTGG
AGAATCTTTAAATGGTTTTTTAGCGCAACTGCATTTTTGAAAAATTGAAA
CATTTTTTATATTATGTATTGTATGTTAGTTTTCTCAGTCATTTTCTTTT
TCGTTCTTTCCCGTACAGACGGCTGCACGGACTTTAGGTGTCGAACCGGG
TTCTGGGCCTACTTTTTAAAAATTTGTGTTTTTTGATACTTGTATTTTGT
CGTTTGTCTTGTTCTTGTCTGTTGTTTACCCTTTTTTGTTTCTTTGTATT
TGTGTGGGAGTTTTTGTTTATTTTTCTATGTTTGTTAGTTTGTTTGGNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNGGACTGCGGGTCGGTTCAGGGTT
ATGGAATCTGGGGGAGGCTGAGTGTTGGACGTCCTTAAAACATGTTTAAA
GCCGCTGCGCCTGTCGCAAGTCAGGGACTTCAGATTGCATTGCTTGGGTT
TTTGAGTGGGTTTTGGTGTTTGTGTTTTTCTGCTTGGCTTTTTAAACTTT
ATGTCTATTGGTTTGTTGGTTCTTTTTCCCATAAAATTCTCATTTCTTGA
CAGGATGTTTGATTGGTTTGATTTATATATTTAGAAAAATTCAAAAAATG
GAAAAAAACGTATAATTATAAAAGTATTAGTGCCTTTTTATGTTTCATCT
TTATTTTATTTAGTATTTTCAACACTTTCTCTCCTTGAGGTCAGATCTCT
GATCTTCACCATATATATATAAGCCTCTCCCTTCTTCAATGATCCCCTCC
TTGCTACCCCCCCCCCTTTTGATGAAAATTTCTGACCCACCTTTTTTCTT
CATTTTTTTGGAATCTTTCTGATTTTTATGATTTCGATTGCTTCAGTAAT
GGATTTGGTCACCTACCTTCCACAGATATAAAAGACTTTGTTTTAATATT
AGATTGCAGTAAACTAAGTGATTGNTTCTTCATTTTTTTGGAATCTTTCT
GATTTTTATGATTTCGATTGCTTCAGTAATGGATTTGGTCACCTACCTTC
CACAGATATAAAAGACTTTGTTTTAATATTAGATTGTAGTAAACTAAGTG
ATTGGGTATTAGTATTATATGGATCCTAGTATAACACTTGATTGTAGTAT
ACTAAGTCATTGATGCGTCGTAGTATGCTAAAAACTTGACCACTTCATAA
GTGACAATGACTTTTTAGGATTTACTTTAGGTGTTTTTTATTTGAATAAT
TGTTTGTAATGGTGGTCCTTTTTGCTAAAAAAAAATTACATTACTTTGAA
ATATTTGAGATGGACTGGGATGGAAATATTTTGCTACGTTCACTATCTAG
CACCTTGCAAATTGGTCAATGATAGGGTAGGATATCAACAGCTATAATTG
GGGTGAAGTCAGATAATTGAAGATGTAGTGTGTTTTTTTGAAAATCTAAC
CTAATGCCTTCTGCGCAATTTTAAGCATCCCCCTGGTGGTCTTGATTCGC
ACTAAAGACAAATATTAGACAAAATGGCATTTATTGGCCTGTTCAAGCCT
GTAAGTTTTTCAAAATAATTGCAAGTCTTACTTTTTTCCTTAATTGTTGT
AATAAATTATATAAAGAAAAAGCAAAATAATCTCATGCCATATGGTTGAA
AATTGTATTCCTTTGAGCACCAAACAAGCCCTGTTAAGCCAATTTTAGGT
AGCAAAATGCTTTTTAAGGTCAATTTTGACCCAAATTCTGGGACTATATC
CGGCATTGTTGAAATCAAACTCCTANCCTCTCCCTTCTTCAATGATCCCC
TCCTTGCTACCCCCCCCCCTTTTGATGAAAATTTCTGACCCACCTTTTTT
CTTCATTTTTTTGGAATCTTTCTGATTTTTATGATTTCGATTGCTTCAGT
AATGGATTTGGTCACCTACCTTCCACAGATATAAAAGACTTTGTTTTAAT
ATTAGATTGCAGTAAACTAAGTGATTGAGTATTAGTATTATTAGTGTTAG
TATTATAACAATTGATTGTAGTATACTAAGTCATTGATGCGTCATAGTAT
GCTAAAAACTTGACCACTTCATTAGTGACAATGACTTTTTAGGATTTAAT
TTAGGTGTTTTTTATTTGAATAATTGTTTGTAATGGTGGTCCTTTTTGCT
AAAAAAAAATTACATTACTTTGAAATATTTGAGATGGACTGGGATGGAAA
TATTTTGCTACGTTCACTATCTAGCACCTTGCAAATTGGTCAATGATAGG
GTAGGATATCAACAGCTATAATTGGGGTGAAGTCAGATAATTGAAGATGT
AGTGTGTTTTTTTGAAAATCTAACCTAATGCCTTCTGCGCAATTTTAAGC
ATCCCCCTGGTGGTCTTGATTCGCACTAAAGACAAATATTAGACAAAATG
GCATTTATTGGCCTGTTCAAGCCTGTAAGTTTTTCAAAATAATTGCAAGT
CTTACTTTTTTCCTTAATTGTTGTAATAAATTATATAAAGAAAAAGCAAA
ATAATCTCATGCCATATGGTTGAAAATTGTATTCCTTTGAGCACCAAACA
AGCCCTGTTAAGCCAATTTTAGGTAGCAAAATGCTTTTTAAGGTCAATTT
TGACCCAAATTCTGGGACTATATCCGGCATTGTTGAAATCAAACTCCTAC
TAAGAGCCATTTTTGAGCAAAATCCTAATTTTGACTGAAAAAATCTTTAA
GGCAATCGACATGAGCCAAAAATTTTTGCAGTTTATGTATGCTGGGAAAA
CTGCAGCAAAATCAAAATCATAGCGGGTATATATCCGCTTACTTTGTTTT
TGTCTTATCTGTGAATAACTCAAAGCTACCTCGGAAAACAGAGGTCGGTT
TCTATCCCATAGGGTCATGGTGGAAGCTTAACAGTTGCATTAAAGACGGA
AGGCTCCCCACAGTGGCACTTAGTACAATGTGACTTGATCTTAGGTACAG
TAGGCTTGGAGTTTCACCTTTGTATAGATGTTTGTCCGTTTGATAAAAGG
CATTGCACAATCTGCTAATATGTAATGATGTCATTGTTTGGAACTTGGTT
AGAATTAAAAGTCTCAAACAGTCAATAAAGAAAAAGATTATATTTTATTT
AATGAGAAAAAGTGGAGGTGACTTTAGGTGATAAGATATAACCTCCTTCC
ATTGAACAGTTGTTAGCTCTGTCTGGTTTCTGATTTAGATGAAAGCTACA
GGCTTTCGTGTGATTGGTTATTACTTTAAAAACAAAGTTCAGGAATTAAA
TATTCTGTCATTTTTGTTTGCACATCTCATCATGTAGTGATTGAAATGAG
CTTTATCTATGGTTTTTCCAGAAATTAATTAGTTTAAATTTCATGTTAAA
CTTTCATTTTATCTTTATTTCAAATAACATGGTAAACTTGCAGTTCAAAT
GAACGAAAGGAAAATTTGACTTTTTTTACTTTGATTTCTATAACAGGTTC
CTGGCTTTTTTTTCCTCAAAAAAATATTTACTATTTCTTCACTTAGTCTT
GGAAGTCTTTATTCAAATAGTTTCATTGTTTTGCTGAAACAATTTTTCAA
AACTTAAGTTTTATCGATGGAAGTTTCTTTTCAATAAATCAGGTTCTTTT
TTTTTCCTCTCTAATTATTATTCAAACAAGCCTTTGTTTTGTTTGTTTTA
TTAACCAACAATTTCTATTCATTTTTTTCCTTTTTCAGGTCGAGCTAAAG
GCAAGAGTAAGAAATGGCGACATATGCTTCAATTTCCCCACATTTCCCAA
TGTTCACAAATCAAAAACACATTAGGTAGGAAATCGAAACCAACAACTCA
TTTTTATGCAACCAGTATTTGGCAATTTAGAATTTGTTTCAAAGCCTTCT
TTTCCCCAAAAAGGCTATTGCACACCTACGTTTTAGATTAAACTAGTACG
TTTTAGATTATTGATCCATATTCAGAGAATGTCTAGTACCTTTACAGGAG
CAAATCTTTTTATTGACTGCATTTTGTGGTCCTAAAAGGCCACATTCATT
ATGGGTCAAGCTACCTTTTCGTTCCACTTTTTAATAGTCTGTTTATTCTC
CTTCATAAATGGAAACCAGGCTAGTGTGGTTTTTTTACCTGGTTTCAATT
GATAATTTCTTCTTATTTTTTTAGACTTGAGCTTCCACAATCTGTGTGAA
AAGGAGCCCATCGGCAAAGAATTATTCAAACAATTTTGTAGAGTCAACCC
AAAAACAAACCAACTGGTCCGATTTCTAGAATCCACAGTAAGTGTTCTGG
CTCTATAGTCAACAAATTTCATAATCAATTTGCTTGTATTTTGCTAAACT
GATTGGGAGTTCAAATGACTTTTCAAAACTCTTGGGTTAAGAAGTATTTC
TGCCGGTATACAAATATAAAAAAGATCCTGACAAGCACCTTAACCCAAGA
CTTTTGAAAAGTCGTTTGGCCTCCCAATCAGTTTAGCAAAATACAAGCAA
ATTGATTATTATGAAATTTGAATTGTATTGGATTTTTTTAGACCTCTGGA
GACAGACTTTAATCATTTCGTTATCGACAGTAAATCTCTTTAACATGATG
TAATGAATAAATCCTTTGATAATGTCCTCTTGTGATCTCTTACCATCACC
TTGTAAATTTTGAATATTTAAATTCAAAGACCAAATATTAGCTTTAATGT
GGTTATAAAGTAGGTTTAAATAAACAGCAAAATTCTTTTTTATTTATTTT
CAAGAATTGACTTAAAAATTTAACCAGTGTCTTTTTACGAGAGCTGTTAA
ATGTTAATTTTAGCTTCTGATTGCTTTATTCTGCATATCGTATATATAAA
TTTTTTTTCAGTTCTAAACTAAATTCTCGTGAAATCATAAAAAAGTTTTT
TAATTGAAAATTCACGCAATTAAAAAGTGGATTTCCACGTTCACGCGCTC
CATCACGCAGCATCAACACAACCCGCTGGGGGGACTGGCCATATTTTAGA
AAGGCAGGGCAGCGTCAGTTGGTGGCCAAAAAGGGCACTTTTTCTTGTGT
TTTTCTGCTAAAAAGGCTGTTTTTATCAAAATTTTAGAGATATCAGGAGG
GGCAGCGTCCAATGACCGGACGCTAAAAGGGCATGAAAATGGCCTGGGGG
ACTAAGGCGAGGGCATTTATATTATCATTGTAGGGTTTTTAATTTTTTAG
GAAGATTTTAAATCAAGCATTGATAGTGAACGACCTGAAAAGGCCAGGAC
AGTTGTAGCACAATATCTTATGATAGAGGTATGACTTCTTGCTTTGAATG
GTGTAAATCTATGACGTCGTTAAGCTTTTTTCACATGCACGTAAAATTTT
ACTTAAGACCTTACGGAAAATTGCTCGTAAGGCTGTCTTTTGGGACATTA
TGTTTTAAGGCGTTATGTAGAGTTGCTTACGTTCAAAAAGTTTTGAACGG
AAGGAAAAGTCACGTAAGACCCTCTTAATCAACAAAAACTCTACATAATG
TCGGGGAAATTCACAAAAGACACCCTTACGAACGATTTTCCGTAAGGTCT
AAAGTAAAATTTTACGTGCATGTGAAAAAAGCTTTAATATCCTTATTTTG
TATTAACAAAATTCTCGAAAGAAAACCAGCAGAGTTGTATGGTGGTAGAT
ACCCTGTCGAGCGCTCTCGGATTGTGCTGCGCAAAAAGACGAGAAGCTTT
TCTCTGTTGACAAATTGATCAAGCAAGTAGCGTTACAATCATTTCCATCA
AAATTGTTGATTTAGAATAGAAGAGGGAACTTCCTTAGCGTTGAAAATGC
TTCCTGTTTTATAAATGAAATCCTCTCGTATCACATGGAACACTTTGTTT
GCTTCCTCACATATAACTTATCGAATTATATTGGCAACAACGTTTATAAT
AAACTTTCCGCGCGCGCCAAGACGACCCATACTCAGAGGTCCCAAATATC
GCCATCTCTACCATCTTTAATATCCACGTGTAATTTAAATTCTAGCAAAC
CTTTTGGGGTATAATAGCTGTAAAATGAGTAGCTGGTATACCCTTAGACT
CCACATACTACTGAGCTCCTAGAAGACCTTGTCGTGCTCAAAAATCAGAA
GAGAATATCACTCAAACTTATTCTTTTCTTTTCTTTTTTTTTGATCGACT
GTAGGATAAGGAGAGTATCTTTGAAGGTGTCATCTCAATGGAAACGGTAG
AAGATGCACGGCGTATGTCCGTCAACGTACCAACTGCAACCGTCTTCACC
CAGTGCGCAAAGTAAATCGTGTGATTTTTTTTTACAATTCCATAATTCTT
TCTTGGTATGCGTTCCGAAATACACAGGTTGTAAAATTGAAGTCTGAAGA
CAAATCAAGCTTTTACTCGAAATTTTTATGTGCTTCTTACATGACATTTA
TTTCTGATTGGCTCAAATTTATTGACACTGGTAAAGTTATCAGCTGTTAG
TTGTAAAGCAAGTAACATGGGAATAAAATCACGTACTGTAAACTTTTTCG
AGTAATCACATGTTTTGACTGCACTGATATAATTTTGCAACCCGTGTATT
ATGCCATTTCTTCTTATTGGATACACCTAGCACTGCCTGACAAGCTGGAT
TTGATCCCAGTTTGTTTTCCTAAAATAGAGTTGAATCTTGCTTTTACGGG
TGTCATCAATTTGAAAAAACAACGCAATCTTGATGGAACTGAAACAAATT
TGTTCAACTCGAAGAGTGATCGAAACCTAATTAGCAATTTTCATTACAGA
TTGGTGATTTTTGATAATTTCGTTTTAATCTTTAGGGAAGTACGGAACTA
CCTGAAAGCGCGTCCATATGAAGATTATTTGAATAGTTATTATTTCAAAC
GTTATTTGCAATGGAAATCGTTAGAACGAATGCCAGTTTCCAAGAATCTC
TTCCGTCATTATCGCGTACTGGGGAAAGGTGGCTTTGGCGAGGTN

Coding sequence (CDS) from alignment at scaffold_108:362516..375810-

>TCONS_00046288 ID=TCONS_00046288|Name=TCONS_00046288|organism=Clytia hemisphaerica|type=CDS|length=3582bp|location=Sequence derived from alignment at scaffold_108:362516..375810- (Clytia hemisphaerica)
GGAAGTACGGAACTACCTGAAAGCGCGTCCATATGAAGATTATTTGAATA
GTTATTATTTCAAACGTTATTTGCAATGGAAATCGTTAGAACGAATGCCA
GTTTCCAAGAATCTCTTCCGTCATTATCGCGTACTGGGGAAAGGTGGCTT
TGGCGAGGTNGATAAGGAGAGTATCTTTGAAGGTGTCATCTCAATGGAAA
CGGTAGAAGATGCACGGCGTATGTCCGTCAACGTACCAACTGCAACCGTC
TTCACCCAGTGCGCAAAGAAGATTTTAAATCAAGCATTGATAGTGAACGA
CCTGAAAAGGCCAGGACAGTTGTAGCACAATATCTTATGATAGAGACTTG
AGCTTCCACAATCTGTGTGAAAAGGAGCCCATCGGCAAAGAATTATTCAA
ACAATTTTGTAGAGTCAACCCAAAAACAAACCAACTGGTCCGATTTCTAG
AATCCACAGTCGAGCTAAAGGCAAGAGTAAGAAATGGCGACATATGCTTC
AATTTCCCCACATTTCCCAATGTTCACAAATCAAAAACACATTAGATGGA
GCTGGAAAATATCGTCGCCAATACTGTCTATTTGAAAGCAAGAGAAAGGA
AGTACGGAACTACCTGAAAGCGCGTCCATATGAAGATTATTTGAATAGTT
ATTATTTCAAACGTTATTTGCAATGGAAATCGTTAGAACGAATGCCAGTT
TCCAAGAATCTCTTCCGTCATTATCGCGTACTGGGGAAAGGTGGCTTTGG
CGAGGTNGATAAGGAGAGTATCTTTGAAGGTGTCATCTCAATGGAAACGG
TAGAAGATGCACGGCGTATGTCCGTCAACGTACCAACTGCAACCGTCTTC
ACCCAGTGCGCAAAGAAGATTTTAAATCAAGCATTGATAGTGAACGACCT
GAAAAGGCCAGGACAGTTGTAGCACAATATCTTATGATAGAGACTTGAGC
TTCCACAATCTGTGTGAAAAGGAGCCCATCGGCAAAGAATTATTCAAACA
ATTTTGTAGAGTCAACCCAAAAACAAACCAACTGGTCCGATTTCTAGAAT
CCACAGTCGAGCTAAAGGCAAGAGTAAGAAATGGCGACATATGCTTCAAT
TTCCCCACATTTCCCAATGTTCACAAATCAAAAACACATTAGATGGAGCT
GGAAAATATCGTCGCCAATACTGTCTATTTGAAAGCAAGAGAAAGGAAGT
ACGGAACTACCTGAAAGCGCGTCCATATGAAGATTATTTGAATAGTTATT
ATTTCAAACGTTATTTGCAATGGAAATCGTTAGAACGAATGCCAGTTTCC
AAGAATCTCTTCCGTCATTATCGCGTACTGGGGAAAGGTGGCTTTGGCGA
GGTNGATAAGGAGAGTATCTTTGAAGGTGTCATCTCAATGGAAACGGTAG
AAGATGCACGGCGTATGTCCGTCAACGTACCAACTGCAACCGTCTTCACC
CAGTGCGCAAAGAAGATTTTAAATCAAGCATTGATAGTGAACGACCTGAA
AAGGCCAGGACAGTTGTAGCACAATATCTTATGATAGAGACTTGAGCTTC
CACAATCTGTGTGAAAAGGAGCCCATCGGCAAAGAATTATTCAAACAATT
TTGTAGAGTCAACCCAAAAACAAACCAACTGGTCCGATTTCTAGAATCCA
CAGTCGAGCTAAAGGCAAGAGTAAGAAATGGCGACATATGCTTCAATTTC
CCCACATTTCCCAATGTTCACAAATCAAAAACACATTAGATGGAGCTGGA
AAATATCGTCGCCAATACTGTCTATTTGAAAGCAAGAGAAAGGAAGTACG
GAACTACCTGAAAGCGCGTCCATATGAAGATTATTTGAATAGTTATTATT
TCAAACGTTATTTGCAATGGAAATCGTTAGAACGAATGCCAGTTTCCAAG
AATCTCTTCCGTCATTATCGCGTACTGGGGAAAGGTGGCTTTGGCGAGGT
NGATAAGGAGAGTATCTTTGAAGGTGTCATCTCAATGGAAACGGTAGAAG
ATGCACGGCGTATGTCCGTCAACGTACCAACTGCAACCGTCTTCACCCAG
TGCGCAAAGAAGATTTTAAATCAAGCATTGATAGTGAACGACCTGAAAAG
GCCAGGACAGTTGTAGCACAATATCTTATGATAGAGACTTGAGCTTCCAC
AATCTGTGTGAAAAGGAGCCCATCGGCAAAGAATTATTCAAACAATTTTG
TAGAGTCAACCCAAAAACAAACCAACTGGTCCGATTTCTAGAATCCACAG
TCGAGCTAAAGGCAAGAGTAAGAAATGGCGACATATGCTTCAATTTCCCC
ACATTTCCCAATGTTCACAAATCAAAAACACATTAGATGGAGCTGGAAAA
TATCGTCGCCAATACTGTCTATTTGAAAGCAAGAGAAAGGAAGTACGGAA
CTACCTGAAAGCGCGTCCATATGAAGATTATTTGAATAGTTATTATTTCA
AACGTTATTTGCAATGGAAATCGTTAGAACGAATGCCAGTTTCCAAGAAT
CTCTTCCGTCATTATCGCGTACTGGGGAAAGGTGGCTTTGGCGAGGTNGA
TAAGGAGAGTATCTTTGAAGGTGTCATCTCAATGGAAACGGTAGAAGATG
CACGGCGTATGTCCGTCAACGTACCAACTGCAACCGTCTTCACCCAGTGC
GCAAAGAAGATTTTAAATCAAGCATTGATAGTGAACGACCTGAAAAGGCC
AGGACAGTTGTAGCACAATATCTTATGATAGAGACTTGAGCTTCCACAAT
CTGTGTGAAAAGGAGCCCATCGGCAAAGAATTATTCAAACAATTTTGTAG
AGTCAACCCAAAAACAAACCAACTGGTCCGATTTCTAGAATCCACAGTCG
AGCTAAAGGCAAGAGTAAGAAATGGCGACATATGCTTCAATTTCCCCACA
TTTCCCAATGTTCACAAATCAAAAACACATTAGATGGAGCTGGAAAATAT
CGTCGCCAATACTGTCTATTTGAAAGCAAGAGAAAGGAAGTACGGAACTA
CCTGAAAGCGCGTCCATATGAAGATTATTTGAATAGTTATTATTTCAAAC
GTTATTTGCAATGGAAATCGTTAGAACGAATGCCAGTTTCCAAGAATCTC
TTCCGTCATTATCGCGTACTGGGGAAAGGTGGCTTTGGCGAGGTNGATAA
GGAGAGTATCTTTGAAGGTGTCATCTCAATGGAAACGGTAGAAGATGCAC
GGCGTATGTCCGTCAACGTACCAACTGCAACCGTCTTCACCCAGTGCGCA
AAGAAGATTTTAAATCAAGCATTGATAGTGAACGACCTGAAAAGGCCAGG
ACAGTTGTAGCACAATATCTTATGATAGAGACTTGAGCTTCCACAATCTG
TGTGAAAAGGAGCCCATCGGCAAAGAATTATTCAAACAATTTTGTAGAGT
CAACCCAAAAACAAACCAACTGGTCCGATTTCTAGAATCCACAGTCGAGC
TAAAGGCAAGAGTAAGAAATGGCGACATATGCTTCAATTTCCCCACATTT
CCCAATGTTCACAAATCAAAAACACATTAGATGGAGCTGGAAAATATCGT
CGCCAATACTGTCTATTTGAAAGCAAGAGAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_029556XLOC_029556Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00046288-proteinTCONS_00046288-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00046288-exon-scaffold_108-1575043694:375485..375810TCONS_00046288-exon-scaffold_108-1575043694:375485..375810Clytia hemisphaericaexon
TCONS_00046288-exon-scaffold_108-1575043694:365636..365722TCONS_00046288-exon-scaffold_108-1575043694:365636..365722Clytia hemisphaericaexon
TCONS_00046288-exon-scaffold_108-1575043694:365174..365286TCONS_00046288-exon-scaffold_108-1575043694:365174..365286Clytia hemisphaericaexon
TCONS_00046288-exon-scaffold_108-1575043694:364183..364260TCONS_00046288-exon-scaffold_108-1575043694:364183..364260Clytia hemisphaericaexon
TCONS_00046288-exon-scaffold_108-1575043694:363200..363306TCONS_00046288-exon-scaffold_108-1575043694:363200..363306Clytia hemisphaericaexon
TCONS_00046288-exon-scaffold_108-1575043694:362516..362675TCONS_00046288-exon-scaffold_108-1575043694:362516..362675Clytia hemisphaericaexon
TCONS_00046288-exon-scaffold_108-1510915933:375485..375810TCONS_00046288-exon-scaffold_108-1510915933:375485..375810Clytia hemisphaericaexon
TCONS_00046288-exon-scaffold_108-1510915933:365636..365722TCONS_00046288-exon-scaffold_108-1510915933:365636..365722Clytia hemisphaericaexon
TCONS_00046288-exon-scaffold_108-1510915933:365174..365286TCONS_00046288-exon-scaffold_108-1510915933:365174..365286Clytia hemisphaericaexon
TCONS_00046288-exon-scaffold_108-1510915933:364183..364260TCONS_00046288-exon-scaffold_108-1510915933:364183..364260Clytia hemisphaericaexon
TCONS_00046288-exon-scaffold_108-1510915933:363200..363306TCONS_00046288-exon-scaffold_108-1510915933:363200..363306Clytia hemisphaericaexon
TCONS_00046288-exon-scaffold_108-1510915933:362516..362675TCONS_00046288-exon-scaffold_108-1510915933:362516..362675Clytia hemisphaericaexon
TCONS_00046288-exon-scaffold_108-1491911889:375485..375810TCONS_00046288-exon-scaffold_108-1491911889:375485..375810Clytia hemisphaericaexon
TCONS_00046288-exon-scaffold_108-1491911889:365636..365722TCONS_00046288-exon-scaffold_108-1491911889:365636..365722Clytia hemisphaericaexon
TCONS_00046288-exon-scaffold_108-1491911889:365174..365286TCONS_00046288-exon-scaffold_108-1491911889:365174..365286Clytia hemisphaericaexon
TCONS_00046288-exon-scaffold_108-1491911889:364183..364260TCONS_00046288-exon-scaffold_108-1491911889:364183..364260Clytia hemisphaericaexon
TCONS_00046288-exon-scaffold_108-1491911889:363200..363306TCONS_00046288-exon-scaffold_108-1491911889:363200..363306Clytia hemisphaericaexon
TCONS_00046288-exon-scaffold_108-1491911889:362516..362675TCONS_00046288-exon-scaffold_108-1491911889:362516..362675Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_108supercontigscaffold_108:362516..375810 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
14.7377	13.4832	6.67473	4.86795	80.7995	68.589	88.6752	101.271	59.0703	67.9657	47.5087	42.616	44.125	36.0524	36.3348	41.2462	44.8175	51.462	29.7379	38.3915	39.6907	39.4271	35.3322	41.7866	42.4639	51.5577	36.8894	25.8019	43.2439	50.9069
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR016137RGS
Blast
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BLAST of TCONS_00046288 vs. Swiss-Prot (Human)
Match: GRK6 (G protein-coupled receptor kinase 6 OS=Homo sapiens GN=GRK6 PE=1 SV=2)

HSP 1 Score: 192.2 bits (487), Expect = 6.270e-56
Identity = 94/202 (46.53%), Postives = 129/202 (63.86%), Query Frame = 2 
Query:  275 MELENIVANTVYLKARESRA---KGKSKKWRHMLQFPHISQCSQIKNTLDLSFHNLCEKEPIGKELFKQFCRVNPKTNQLVRFLESTEDFKSSIDSERPEKARTVVAQYLMIEDKESIFEGVISMETVEDARRMSVNVPTATVFTQCAKEVRNYLKARPYEDYLNSYYFKRYLQWKSLERMPVSKNLFRHYRVLGKGGFGEV 871
            MELENIVANTV LKARE      KGKSKKWR MLQFPHISQC +++ +L+  +H+LCE++PIG+ LF++FC   P+ ++ V FL+   +++ + D +R    R +   +L     + I E  +  + V +  +     P   +F +  +    YL   P+ DYL+S YF R+LQWK LER PV+KN FR YRVLGKGGFGEV
Sbjct:    1 MELENIVANTVLLKAREGGGGNRKGKSKKWRQMLQFPHISQCEELRLSLERDYHSLCERQPIGRLLFREFCATRPELSRCVAFLDGVAEYEVTPDDKRKACGRQLTQNFLSHTGPDLIPE--VPRQLVTNCTQRLEQGPCKDLFQELTRLTHEYLSVAPFADYLDSIYFNRFLQWKWLERQPVTKNTFRQYRVLGKGGFGEV 200
The following BLAST results are available for this feature:
BLAST of TCONS_00046288 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
GRK66.270e-5646.53G protein-coupled receptor kinase 6 OS=Homo sapien... [more]
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