TCONS_00046282 (transcript) - C. hemisphaerica

Overview
NameTCONS_00046282
Unique NameTCONS_00046282
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2677

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00046282 ID=TCONS_00046282|Name=TCONS_00046282|organism=Clytia hemisphaerica|type=transcript|length=2677bp
ataattaggtggcacgcgcctgaccgcgcgactacggtcgaaaaggtgta
ttgacgACATTTTAATATCTTCTACTCATGATGATAAACTAAATTACTTT
AATCTTTTCATACAGGAAGAATAAATTAGAATTTGAcctaaacaaaaaag
aaaactgaaaaaataacagaaacattacatcatcaaaacaaagatggcag
atacaGTTACAGAGGAGTCTGGACAAGAGTCTTGTTGGTCGTCATCTGAT
GAGAGATCATCTGGTAATGAATATTCAGTCAAAATGAAGAATGAAAAACT
TCCCGAAGACGAAGCACTGAAGGAGCTGTAtcggaaaaagaagaagaaaa
agaaacataaacgaAAACACAAGAAGAAGAAAGATCGGACTGCTGATTCC
TCAGATGAAGAAGATCAGAAAGAAGGTGAAggtaaaaagaacaaagaaga
aaagaagaaagcaAATGGCGTCATTAAAAGCAATCAATTGTTGTTGAAAG
TAGACGCCATCTTGGAGAGTGCACTGTCAGCAGtcgaagagaaaaacaac
atcaaGAAAGATTCTAGTATTAAAGACACAAAGAAAACTGTTGTCGAGGA
TGTTAAGAAAAATTCCAACAAAGACAATAAACGAACTTCGAAGACCCGAT
CAAGGTCGAAAGATCGAGGTGAATCGAAGAAACATTCTCGTTCAAAGTCG
AGAGAGAAAAGAAAGCGTTCGAGATCTAGAGATCGAAAAAGAAGTCGTTC
AAGGTCCAGAGATCGTAAAAGAAGTCGTTCAAGGTCTAAAGATCGAAAAA
GGAGCCGTTCTAGGTCTAAAGATCGAAAAAGAAGTCGTTCTCGGTCCAGA
GATCGAAAGAGAAGTCGGTCCAGATCCAGGGACCGCAGAAGAAGTCGTTC
GAGGTCCAGAGACCGCAGGCGATCACGGTCTAGGGAGCGGCGCAGTCGAA
GATCTCGATCAAGATCAAAAGATCGGCGTCGAAGGTCGAGGTCACGATCA
AGGTCCAAGGATCGTCGACGTCGCTCCAGATCAAGGTCCAGAGACCGTAG
ACATAGATCAACCTCTAGAGATCGCCGTCATCGTTCACGATCTAAAAGTC
GAAATAGAGAAACTGTAGACACTAAACAAGACATCGAGGGTCCAGTACCA
TCGAAATGGGACGTTAAAGAAACTGAAGCAATGAGAATAGTTAATGCAGA
AACTGACAATGTATTTCAAAAAGTATCAGCACTCCGTAGATCCGGAATTG
AAATCAAGTACGGGAACACAGTACCGGGTAAAGATGCACGGGATATTCTT
AACGCAAAAGCTAAATCATCATCCACCTCTAAGAAAGAACGCTCAGATCC
ATATGGGAAATGGGAATCAGTGCCCGATGGTGGAAACCGTGATTTGAATA
AATTCACAAAACTGTGTTTAGAAATTTCAGCCAAAGATAGCAAATACGAT
AGCCATCTTGCTGATAGTAGGCGGAGTAGTGACGATGATGAAGCTGAGAT
CCACCATCCATTCATATCGAAGCCAGCACCCATGATGTTCCCATCTTCCT
CAGGAGGGTACAGTGGAAGTAGTAGAAGCAGGATTGCTATGAATCCCGCA
CAAGCTATCATGGCAGGTTCAATGAATTCCATCACAGCCAACCCAGCGGA
CATCATCACTGGCCCGTTAGAGAAACATTTCCCTGTTTCTGCGGGTAATG
ACCATCGTGAAAAGGAGAACGCGAAGGGAGAAGAAGCTGACCTTCCTGTC
TATGAAGAAGTTGACGAAGGACCCACAAAGCCAATCAACGTAAGCGCTGT
AATCGGGCGGCGTATGGGCGCCCAACAACGTTTGAACGCTAATCCGAACG
ATCAGTTAGCGCGTTCGGTTTTAGAAGAATGTGATTTGAAACTTAAAGGA
TGGACTGAGAAGAATCGAAAACCGGGCAAATTTACCGGTGAACGAGGCGT
GCTGATGAACAAGAAAGAGATTGCAGGTGCCGTAGAAACCTGGGTCCGAA
AGGATTTCTTTCACAATTTGATGCCAGTATGTGGAGGTGTTGGTATGCGA
ATGTTGAAAAATATGGGTTGGAAACAAGGAACTGCTCTTGGCAAAAATCG
CGAAGGATATGTGGCACCGGTTACTTTTGACGTCAAAGTTGGTCGCAGTG
GATTAGCTTCTCAAGAGGAACAACCTCAAAGAGGGCGTGGCTTGTATGGA
AATAACTCCTTTCAACGGAGCAATTTACCGAAGAAAAAACTTGCACCTGT
CAATAATATAGGAGgcaAACACCCGGTATCGGTATTAGCAGAGAATTGTT
CTAAAAGAAAGATGGGGATGCCAGAATACGAATGTGTGTTCGAAGGTGGT
TCATCACACAATAAGACTTTCCTCATCAAATGCACCATACAAAATGTAGA
CTATCAACCTTCAGTCGCATCTCCAAACAAAAAACACGCCAAAGCTCAGG
CTGCAATGACTGCTCTTAAAATCCTGGGTTTTGATCAATAATAGGCTTTC
TACCACATAATTGTCGCGAAGAATTGATACACACCTTAAAGCTTAAACTG
TTATAAATGCTTTCAATACACTCGATGTTTGTCAATTAAAGGCTTATGTA
GCCCACACTAGAGAAGAAACACATTCCAAAATACagatacagtggagtct
ctataattcgaacctctataactcgaa
Run BLAST on NCBI

transcript from alignment at scaffold_108:275181..289851-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00046282 ID=TCONS_00046282|Name=TCONS_00046282|organism=Clytia hemisphaerica|type=transcript|length=14671bp|location=Sequence derived from alignment at scaffold_108:275181..289851- (Clytia hemisphaerica)
ATAATTAGGTGGCACGCGCCTGACCGCGCGACTACGGTCGAAAAGGTGTA
TTGACGACATTTTAATATCTTCTACTCATGATGATAAACTAAATTACTTT
AATCTTTTCATACAGGAAGAATAAATTAGAATTTGACCTAAACAAAAAAG
AAAACTGAAAAAATAACAGAAACATTACATCATCAAAACAAAGATGGCAG
ATACAGTTACAGAGGAGTCTGGACAAGAGTCTTGTTGGTCGTCATCTGAT
GAGAGATCATCTGGTAATGAATATTCAGTCAAAATGAAGAATGAAAAACT
TCCCGAAGACGAAGCACTGAAGGAGCTGTATCGGAAAAAGAAGAAGAAAA
AGAAACATAAACGAAAACACAAGAAGAAGAAAGATCGGACTGCTGGTATG
ATGAATATTTTGTCCCCTTTCATTTTCAAAGTTTGAATCTCAGACCTCTA
TAGATGTACTTCTACAAGAAACTTATTCATTTCCCTAATTTTCAGATTTT
TATTCCAATCTTAATCTCCATAACTCGAACACGCACGGATAACGCAGATT
TGTTTGAGTTACTGACTAAGGTTTATAAGGCGTTGTTAGCTGGAGGGACC
ATAAAACTCGTTCGATTTATGGAGACATTCGAGTTATAGAGGTTCGAGTT
AAAGTGACTCCACTATACTGTTAAATTATAAAAACATAAGAATAATTCAG
ATGCTGCAGGCCAGTCTCACTAGAAAATCTACAAAATAAGTAGATGTATA
AATTTTCTTAATTCTGCGGACGTCTGTAGAATTACGGCACTCTTTAATAT
CGACATATAATGTAGAATATAGAATTCAACTGATTTTGTAGATATTCTAG
AACGATTTCACTTTGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNT
CGAGCTCCAAACCCCTGACCCAAGAACTTTTGTAGTGACGAGTAAACAGT
CTAACTGACGAGTTAGGCTAACTGTCTAGATCGCTATTTATCCGGTATTA
TTCTGTAGAAATTTTAAATTTACACCATCTACGTATTCTGTAGAATTATG
TGTGATAATGTGTTGGATGCTGATAAAAAGCATGTAACCGCACCCGTATG
CGGTACCCAATAACTGAAATTTGGTGTTACTGTTCAAAACTTCATGCTTT
TATCACCATCTGAAGTATTTTTGGTGCTAGGAGACCTCATTGATACACAA
AAACGCTTTCATTCCACTGTTTTTGAAATTTTGATTTTCTTTGTAGATTC
CTCAGATGAAGAAGATCAGAAAGAAGGTGAAGGTAAAAAGAACAAAGAAG
AAAAGAAGAAAGCAAATGGCGTCATTAAAAGCAATCAATTGTTGTTGAAA
GTAGACGCCATCTTGGAGAGTGCACTGTCAGCAGTCGAAGAGAAAAACAA
CATCAAGAAAGATTCTAGTATTAAAGACACAAAGAAAACTGTTGTCGAGG
ATGTTAAGAAAAATTCCAACAAAGACAATAAACGAACTTCGAAGACCCGA
TCAAGGTCGAAAGATCGAGGTGAATCGAAGAAACATTCTCGTTCAAAGTC
GAGAGAGAAAAGAAAGCGTTCGAGATCTAGAGATCGAAAAAGAAGTCGTT
CAAGGTCCAGAGATCGTAAAAGAAGTCGTTCAAGGTCTAAAGATCGAAAA
AGGAGCCGTTCTAGGTCTAAAGATCGAAAAAGAAGTCGTTCTCGGTCCAG
AGATCGAAAGAGAAGTCGGTCCAGATCCAGGGACCGCAGAAGAAGTCGTT
CGAGGTCCAGAGACCGCAGGCGATCACGGTCTAGGGAGCGGCGCAGTCGA
AGATCTCGATCAAGATCAAAAGATCGGCGTCGAAGGTCGAGGTCACGATC
AAGGTCCAAGGATCGTCGACGTCGCTCCAGATCAAGGTCCAGAGACCGTA
GACATAGATCAACCTCTAGAGATCGCCGTCATCGTTCACGATCTAAAAGT
CGAAATAGAGAAACTGTAGACACTAAACAAGACATCGAGGGTCCAGTACC
ATCGAAATGGGACGTTAAAGAAACTGAAGCAATGAGAATAGTTAATGCAG
AAACTGACAATGTATTTCAAAAAGTATCAGCACTCCGTAGATCCGGAATT
GAAATCAAGTACGGGAACACAGTACCGGGTAAAGATGCACGGGATATTCT
TAACGCAAAAGCTAAATCATCATCCACCTCTAAGAAAGAACGCTCAGATC
CATATGGGAAATGGGAATCAGTGCCCGATGGTGGAAACCGTGATTTGAAT
AAATTCACAAAACTGTGTTTAGAAATTTCAGCCAAAGATAGCAAATACGA
TAGCCATCTTGCTGATAGTAGGCGGAGTAGTGACGATGATGAAGCTGAGA
TCCACCATCCATTCATATCGAAGCCAGCACCCATGATGTTCCCATCTTCC
TCAGGAGGGTACAGTGGAAGTAGTAGAAGCAGGATTGCTATGGTATGCCT
ATCTTTAGTTTTATTGTTTCTTGAGTTTGAACCTTCTATTCAACTCGGTA
CTCTTTGGCAGCTACTTGTATGAGTGATCTTATTTGCTTAAAAATTGATG
TTTTAGAACTAGGTTTTTTATGTTTGGTTAAGTATCGTCGTTTCCACCAT
TATGGAAGCAAACGTTCTATTTGCGTCAGGGCAGGGGAGGGCACCACGTT
GTGGTACTAGACCAGTGCCGAAAAGTTGTACTTTTCTTATTTTTTGAAAT
TTACCTAAGACTACCACCACTTAGTACCCTGGTACTAAGTTGAACTTACC
CCTTAAAATAGGTATACCACCCCTTAGTACCCGGTACAATCTTGATATGA
CCATTGAGAAATTTTACTATCGACCCCCCCCCCCCCCCCTCCCCCCCNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTAGTAAAATCTC
AGACATATATGAGTAGTAAAAGGATTTTTGCGAATTTTTACATACCACCA
CCCAGACTCTTGGAAGAGGTATTTTACTACCCTGGTAGCAAAAGTTTTTG
GGACAATTTGTCATGGAGACAGTCTTTTCGGACTTATTTTACAAAAAAAG
CTAAAAAATTATTATTTCTGCGACACATTTTTCACTTAGTGCAAAATCTA
ATGTTTTGCCCTTAGAATTGAAATCTTTTTTATATATTAACAAAAAATTT
CGAGAATTTTTTGTTTGCAGCAAACAACTTTCCAACGGAAAATTTTTTCA
AATTATAAACATTTTCAGCTTTTTTCAGAAAAATAGCTAAAATTTGCTAA
TTTTACCAGTTTTAACTACCCAGGTTGGAAAAATATTTAAAAATTTAACA
CATAGATACCACCCATTTTAGTATTTAACTACCCTGGGTAGTAAATTGTT
TTTTAGATTTTTCGTCACACCCCCCCTGCCGTTAAGTACCCTGTATTAAG
TTGATTTTCCCCCTCAAAATAGGTATACCACCCTTTCATTTTTAGTAATG
GTACTTTCTGGTACACCTCCTTTAAATTTTCTAAAAAGCTTCCTTTTTAT
GAAGAAGTGGTGGTTTCCCCCTCATTTTGGTCATAAATCGCTTATAAAAT
AACACTTCTACATCAAATAACTCCCATTCAGTACAGAAATCAGCCATGCT
TGCTTAAAAGTCTTCTATATAGTTTTTCAAGAGCTTTCAGATTCTATAAT
TGGTTTTGGCCTAAAATGAGTTTGAAATCTCCATAAAAAATGAGCTCTTG
GGCTTTACCCTAGGTTTAAATAAATGGGTCCAGAAATAAGGGCTACCCTT
AAGTCTTTTATTGGGTTGCCCTTCTAATATCAATCCACAGGGTATTAGGC
ATGTCTGGTCCAAATTTGGTGCTTTGTTCCAAATTTGCACGATTTTTACA
CTAATCAGGCCTACTTTGATAACACCCAGGGGAAAACAAAAAACAAAAGT
TTAATAAACAATAAACGTAATAAACATCCTAATGAAATGGTAAGAAATAA
ATATAGACTGCCTACAATAAGATTTTTTTTGTGATTTTTCAGGATTTTGA
GTACCAGATACTAACTTGATGCCTCATATTTGGTATTGAGACCACCATTT
AGTCCGCCTTGATACAAAGTTGCAAAAATGTTTTTTTCAATAAGGACCAC
CACTTAGTACCATGTACTAAGTTGTTTTTTACTTATCTTATCAGACCACC
ACCCGGCACTGGCCCCCACAACTTAGTACCAACCCCCCCCCCTGTCAGGG
ATCGCTTCTACAGCCTCGAACGTATGCTTCCAAAATGAATTACAATATTT
AGACAAACATGAAAAACCTATTTAGATGGAAATGAATGGGAATTTTCGCA
TGAAAATAGATACGCTCTACAATTAGCTGTCACAGGTGAACCTGTATCCG
CTGTAATTTGTATTTATTTTATCATGGTATTCACGAGTTCTCTATATCCC
TGCCTATCTTTTCAGTTGTGATACTGACCGAACACATGAGTTTTTAATTC
TTAATGAACCGGTCGAAATGACGTTTGTTTGAGAGCAAAAATACTTGCGT
TATGGCGTTCTTCATTTTTGACTCTAGTCTACTAGGAGTAACTACGTGAA
AATGCTTCTATAATTAAGACGGTTAAGAGCAGCGGCTTTCTTTTATCACC
ACCTTCACACGATACGGTTCCGTTTCGTTCCTACATGAAAAGTAGTCATT
CTATTGGTTGAATTTAATTGTTACTTCACTTCTCACCAATAGAATGACTT
CATTTCGTTTCGGGGCGAAACGGTACCGTAACCTGCGAATATGGTATAAA
ACTAATGAATTTCCGTAAATTGTAGGTATCACAGGACTCGTGAACATCAT
GAATGTATATTTTATTTTTAGGTTGAAGACAACACAATGATTATTGAGCA
GTTCTCCATCAAGCCTTCTTGTCGCAGTAGCGCTCTCAGCACTCTAGAAG
GAGCAAAATTTCATATCATTTCAATTTTTAAGAACAAACCAGAAATCTGT
GGAAAGTGTTTACCATACACCTATCAATCTAAGATTTGCTTCGAGTTTAC
TTGGATTGAATGAAATTTTTCAACCCTGATGAGCTCAAATCAGATCCCCT
TTTAAACAGCCACTCCGTGTATAGATATCTCTTAGATTGGCTTGAATATT
TTTATGAAATTTTGCTCCATCAAAGATGATTGGCAAACATAGAGTGCTGA
AAACGCTACTGCCTCTTATATATATATAAAGAACTTTCCCGATTTCTGTT
TTTTGTGGAATAATTCACAGTTCCAAATATGTGTTTTTCTCGCTTTTTCA
AGAAATCTGGAAAGTTCTTTTCATTCCTGATACTCCAGGATATTCTTAAG
CTTGATTCTTTCCGTGGCATAATCTTTTAGCATATATGATAGAAGTCATA
ACATGATTGTGTCATAGAGCAAAATCAAACTTAAGCATATCATGGATGGA
ATTAAAGTCCATTCGTTTTAAGTGTGCACTGATTCTTATTTTGCTTAGCA
TTTTTCAAACAATGCTTTAAAAAACACTGTTTTTTGCTGCTTTTATTTTC
AATTAACTTAAAATGTAAAAAATATCACACATAATCTACCTCCATACCAA
AAAAAAAGTTTCTAACGTCAAAAAAAAAGAATTTAATTATTTTCCTCATG
TCCTCATTCAAATAATCTCAACAAACATTATAGTACTCTGAATTATCTTT
TCAACCGTATATAATTTGTTGGAATTGAAACATTAGTTGAAAGGTGGTAA
GAAAATTAGAATTGGTGCACACTTAAAGCAAATGGAGTTCAAAGACTTGA
TGGTGAACTGTTTCAAAATAACTTTTATTTCATACAGCAGAGGGGGTTCA
AAAAGATTTTAAACATCCCTCCGTGGACACCCTGTGAAGTGGTTTTGACC
TATAAACTTTAGCAAGATCTAGAGTTACTTTTAAAATCTTTTGCATTTGG
TTGCTCCCAGTTTTTTTTTCCCAAAAGAGGCTTTTCTGGTTTTTATACAG
GTTTTTATACAGGTTTTTAAGGGTTTCCCAAACCTAATGAAAATCCGCCA
TTATGGAAGCCGACGTTCGAATTTGTAGAGACGACTCCTTGCGCAAATAA
AACGTTTGCTTCCATAGTGGCAAAAGGGGCCTGGAATTCCCGAGTTATTT
TTTCTGAGTTACTTTGCATTTGACGTCATAATTTCAGTTTTACGACGTCA
TTATGACGTCAGAAAAATGAAAAAAATGAAAAATGATAACTTGAGTTTTT
TTTGCGGCTTTTAACTTTTCGAATTATTTGGTAATTATTTACTCGATAAA
AACTCTAACAAAAATAAAATTATGGTGTCACATGGAAAATAACTCGGTAA
AAATAACTTGGAAATTCCAGGCCCCATGGCAAAAGTTACGTAACTTGGCC
AACTTGAAAATCCTTTATTCGTGATATTCATGACGTAATGTTTTCTACGG
AAACACTCCGGTTTTTGTCATCAGTGGAAATTTTGATAAAGGGAAAAATT
GTTTAAATTTTGCCAGTACTGGCAAATGATGACCATTACGTCATGAATAT
CTTAAATAACAAGAAGTGAATGTGTGGTGAAGGATTGCTCCAAACCCTTT
ACTACACACTCTATTAACTTTCTCATTGGGCGCTTCCAGAAAAAAATTGA
ATATGGGGGGTGGAGGATATAACATTTTTTGGAAATCCTCCCCCCCCCCC
CNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNC
CTCCACCCCCCCATGTACAAACATTTTCTGGAAGAGCCTATCATTGCATT
TTACTCACTTGTTCATGGGTTCAACATTTTCAAAATGACGACAGGTAACT
TTTATGGAGCCATCGATTTTATTTGACATTTCCTTTATTGAACGGGCTAA
AATCGATGGCTCTAAGGTAATTGGTATTAAATTATTTTCTCTCTGTTAAC
CAGCTTTATTATCAGTAATCTTTCAGTGTTTCTGCGATTCGATCATGATG
AAATTTTAGGTTATACCAGTATATATTCTGCCATCATATTCAAGCAGTGT
GAATGAGTCCAAATATTATGATGATTTGGCTCGAGTCTGGGTTAGTTGAA
GCCTGCGTATTTCTTTAGATAATACTACAGTTGAGCCTCTCTATTTCGAT
TTGAAAGGGAAATTTAATTTTCATCGAATAAGGAAGTGTATTGAATAGTA
GAACGTCGTTTATGAGAGTTTCTTGTTTGCAGTGACTTACAATATTATCG
AATAATGGAGCGTATCGAATGGGAGAACGTCGAATTATAGAGCTTCAACT
GTACTTTTCTCATTCTTAACTTTACCGTTTTAATTTATATTTTAGAATCC
CGCACAAGCTATCATGGCAGGTTCAATGAATTCCATCACAGCCAACCCAG
CGGACATCATCACTGGCCCGTTAGAGAAACATTTCCCTGTTTCTGCGGGT
AATGACCATCGTGAAAAGGAGAACGCGAAGGGAGAAGAAGCTGACCTTCC
TGTCTATGAAGAAGTTGACGAAGGACCCACAAAGGTAAGTGAAACAATCA
GAAATCAATTGCTGCTTGGAAACTGTCTTTGTGATCCTTGAAGGCTTATT
ATAATAGTGGGGTCGTTTAGCATAATTTACGGGGAAAAAAATAAGATCTA
GCTGAAACTTTCTCTATAGGATGGTTATGCCTCAAGAAAAAATTCCCTAA
AATCCCACTGGTGGAACATCCTTTTTTTGGGACATTTCTTTTTTCCCCAG
GCAAAACCCTAAGGGCGAAATTTTTTTCAAACGTATTTCCAGACAATATC
ATGTATACCATTCGAAAGCTCTCGAAAAACTATATAGAAGACTTTTAAAC
GGGTATAGCCGATTTCATTACCTACTAACTCAAGATAATTCACGCAGAAG
ATGCTATTTATGGTCAATTTTAGACCAAAAATGTTTTTTTCCTACAAACA
GCCTGTATTTTTGTAACACGACCACACTATAAGGCTCAACGCCCAATTTG
TCACTAAATTTTTGATCAAATCTTTTTAATGGGGAGCAGAGCAGCTGAGA
GTTTGTTGTCTATTCCTTGACTTCGGCCTCTACTGACAAGGCTGATTTCC
CTTAAATCAGAGTTCTTTGAAAGAGGTTTCGATTATGATATCATTTGGTA
TCCAGTCTATTTGGTATACTTTGGTATACAATCTACGTACTTTCTAGTTT
CGAATCCGAACCGAGGCTTACTTTACAAAGTTTTTGAAAAGTGATTTCCT
TGCTGTTCCTTTTTCCAGCCAATCAACGTAAGCGCTGTAATCGGGCGGCG
TATGGGCGCCCAACAACGTTTGAACGCTAATCCGAACGATCAGTTAGCGC
GTTCGGTTTTAGAAGAATGTGATTTGAAACTTAAAGGATGGACTGAGAAG
AATCGAAAACCGGGCAAATTTACCGGTGAACGAGGCGTGCTGATGAACAA
GAAAGAGATTGCAGGTGCCGTAGAAACCTGGGTCCGAAAGGTAATTGAAT
ACGTTTTGTTATATGTCATTTTTTATAAGTGGACTCTCGTTATAGATCAT
GATATTCATTATGTCATGTTTTAGAAACAATCCCGGTTTTTGCCAGTAGT
GGCAAATTTAAACTATAGAAAAGTTGTTGCCACTACTGGTAAAAAACGGG
GTGTTTCCGTAAAAAACATTATTACGTCACGAATATTATGAAAACTTTTT
CTGTGCTTTTGATTCTTTTGTACAATTTATACTAATTGTCATTACCGGCA
AGAAAATACCTTATCAAATACTTTCTACCATTCAAATCTCTCTGTAACTC
AAATAAATTAAATTTTCTGTTCGAGTTTGAATTAGTATTTCAGAAAGTCG
TCGTATGTTATCTTAACTTATTCTGCTCTTGTAACCATCATATGGGCCCC
CCCCAGCGGTTTGCGTGATTGCGTGAATGGGCATTTTTGGTTGCGTGAAT
GCGTGAAAATTGAAAAAAAATGCGTGAATGCGTGAATTAAAAAAACTTGC
GTGAACGTGAAAATGTACTTTTCGATTGCGTGAATGCGTGAATCTTGGCT
ATTTTGTGCGTGAATACGTGAATTTTCCCTTTTTTCCACCAATTATGTGC
AGTTTTCCCAATTTTCCAATGTTTCCCCAATTTTTCACAAAATACTTTCC
GATTTCTGAAAAATCGGGTTATTGCGTGAAACTCGAGGAAAATTTGCGTG
AATGCGTGAATTTCGAATAAAAATTGCGTGATTGCGTGAATTGAGGGTCC
GCTGGGGGGGCCTCATCATACTTTGATAGAATCATGTAGGTTTAGGAAAT
GTATGTTTTTTGCTAGAATATTCGCTACAAAATTTAACCAAAATTTACTT
TGAACAGGATTTCTTTCACAATTTGATGCCAGTATGTGGAGGTGTTGGTA
TGCGAATGTTGAAAAATATGGGTTGGAAACAAGGAACTGCTCTTGGCAAA
AATCGCGAAGGTATTTTTCTTATGCATTTATTGTGCTGTCTACTGTACCT
ACTGGGTTACCCACCTACCTACCAGACCTACCAGTTTTTCAACATAAATT
TTGATTTGACTACCCTATTTGACTTTCTGCCTCAATTCTTTCTCAAAAAT
CCTTCCTATCTTTTGTAACTCAAGGTGTTTTCCGTGCCAATGAGTGAATG
GCTATACAAAGTTAGTCGCGAACGGTTATGTATTCAGTGGCGAGCAGCCT
TATCTAGTGTGCCGGGCAACTCTAGATGGACTTCATTGACCCGTGCATAT
TCCACATGGCCCTGGCAGCCAATTATGAAAACTAAATTATTTAAAAATAT
TCGTATTGGTTCCCTGAATGTTGGAACCATGAGAGGTAGAGCTGGTGAAA
TTATCGAGACTGTGTCACGCCGTAGGGTTTCAGTCTGCGCTATTCAAGAA
TCACGATGGAAAGGCCAATCAGCTAGAATGATAAGCGGTAAAAACTGCAA
ATATAAGTTCCTTTGGTGTGGTGATGAAACTGGTTTTGGTGATGTGGGTC
ATCTCGTGGAGGAGGACCTTGTTGAGAATGTGATATCTGTCGAACGCATA
AACAGCAGAATCATGTACATTCGCATCATGATCGAAAAATCCATTATCCG
TATCTTTAGTGTTTATGCGCCTCAAACTGGTCTACCTGAGTTACAAAAAG
AAAAGTTTTACAACGATCTTCTTACTCAGACAGCCCTAACACCGGAAGAG
GAATTTCTTCTAATCTGCGGTGATCTTAATGGTCATGTGGGTAAAGAAAC
AGCAGGTTTCGACAATGTTCACGGTGGAAATGGTTTTGGTGACAGAAATG
CTGACGGTATCAGACTTCTTGACTTCTGTTTAGCTGCTAATCTTGCTATC
ACTAACACATTCTTTTCTAAATCAGACAATAAATTGGTCACCTACCAGTC
TGGTGCCACAAAGTCACAAATCGACTTCATCTTAATTCCGAGAAATCACC
TAAAAACAGTCCGCAATGTAACTGTAATTAATGGTGAAGAATGCACTCCA
CAACATAAGTTGATTGTTGGTGACATTATTCTGAATGCAGGTAAGGTGAC
TCTCAAAGCCTTTCCCAGACGCAGACGCGTATGGAAACTAAAAGAGCCTG
CTATATGTGAGGATTTCTGTGCAAGTGTTAATGCGAAATTGCAAAATGCT
GTTGCTTCTAATGATATTGATGAATCCTGGAAAAATTTGAAAAACTCTAT
TCTTGAATCCTTTGATACTTCCTGCGGTTGGTCAAAACCACATCAAAGAC
GCAGGGAAACTTGGTGGTGGAATGAAAGGGTTGATACTGCTGTTAAGGAG
AAAAGAAGACTTTGGAAGATCTGGAAACGTGGTGGTCAGAAAGAGCCATA
TCTGGCTGCTAAACGCAGGGCAAAATCTGAAGTTTACCAGGCTAAAAAAG
ATGCTTCAGTTGAAAGGTTTCGTAATTTGAATGAGAAAGATAAGCTTAAC
CATGTCTTCCAGCTTGCTAGAAAAATGAAGTCTGAGAATCAAGACATTGT
TGGTGAAAAGTGTATTCGTAACAAAGAAGGGGATATTGTATATGATGATG
CTTCAAAGTTAGAGGCCTGGAAACAACATTATGATGGTCTCCTGAACTCT
GAATTTGCCTGGGATGAATCTGCTCTTCCAAACGCAGATCCCATTATGGG
TCCCTCAATTGAGATAACTGAGGCAATGGTACTCAAAGCCATTAATCAGA
TGAAATCTGGCAAATCCGCTGGGCCAAGTGGCATAGTTTCTGAAATGCTT
AAGGTCTCGCGCGATAGTGTTGTCCCGAAACTCACAACCCTTATAAATTT
GATTATTCGAGAAGGTAAGGTACCTGATGAATGGAACGAATCGTACATCA
TTAGTTCGTATAAGGGAAAAGGTGACTCCCTTGATTGTGGTAATTATCGC
GGTCTCAAGTTGTTAGAAGTACTGCAGAAGGTACTGGAGCGCATCTTGGA
AAGTCAGGTCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAATCTTAATCGACTCCATGC
AGTTTGGTTTTATGCCTGGTCGTGGAACAACAGATGCCATATTCATCTTA
CGACAACTTCAAGAAAAATATCTTGGAAAAAGAAGGACATATTTTTTGCC
TTTGTTGACCTTGAAAAAGCCTTCGACCGTATACCACGGAAAGTGCTGTG
GTGGGCCATGCGAACTCTTGGTGTTTCCGAATGGATTGTAAAAACGGTTC
AGGCTATGTACAATTCTCCAAGATCTCGTGTTCGCATCAATGGTAAATTC
AGCGACGAGTTTGATGTAAACGTTGGTGTGCATCAAGGCTCAGTCCTGAG
TCCTTTGCTATTTATAATTGTCATGGAAGCTCTCTCTCGGTCATTTCGTA
CCGGTTGTCCTTGGGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAAT
GTAAAAACTACATTCATAAACGATGCTCGGGCATAAAAGGGCGTTTAAGG
GAAGATTTTAACTATGTTTGTCCTGCTTGTCTAAATCCTGTTGTTGTACC
TCCCTCCCCTGTGTTTTCCATAGACGGTTCAGATCTTGAGGTAGTACCCA
CATTCTGCTACCTAGGTGATATGATTGGGGACAATGGAGGCTGTTTTGAT
GCAATTACCTCAAGGGTGAAGTCTGCTTGGAGAAAGACTTGGTATTCCAT
GTATTAAAGACTTAGTTTCCCAAGGTAGACTTCGTTGGTTCGGTCATGTG
CAGCGTATGCACGACGACTGTTGGCAAAAAAAGATGCTCACTCATGTAGT
GCAAGGGAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNCGATCGCATTGCATGGCGTACGGCCATCAAGAGAGGAAGG
CGTCCAACCCCAGCTGCTGGGAACAATGGACGATAAACCGTGCAGTAAGT
AAGTAAGTAAGTACCCAAGGCTATAGAAAGTGACAATTTAAGATTTTCGA
CTCATTTCGGATGACGGATTGAATCTAGTCATTTTTAAGTTTGTTTTTTT
TTTGCCTGGTACACAATTTTCGAAATCAAGCGGAAAATGTGTAAATATAT
AACTATGTAGGAAATTAGTGGCTTTGAATCCTACATAGGAGATTCACTTT
GTATACTCCTTGGCTTTTCAGTTGACTCTTTTTAATTCGATGTTCAAAAG
ACCAAAAATATTATTCGAATTAGGGAAAGATTCTAATTACAGCGAGTAGT
TTTAACGGCTTTCCAGCTGAGGGAACCAATATTTTAGAATCAAAAAGAGA
TTGGAATAATAGAGGTTCCTGTTAGAAAGAATTTAGTGTACCTCATCAGT
TGGTTTGATCATTTTTTAAACTGCTCTACCCGTTTACACACTCTTCAGGA
TATGTGGCACCGGTTACTTTTGACGTCAAAGTTGGTCGCAGTGGATTAGC
TTCTCAAGAGGAACAACCTCAAAGAGGGCGTGGCTTGTATGGAAATAACT
CCTTTCAACGGAGCAATTTACCGAAGAAAAAACTTGCACCTGTCAATAAT
ATAGGAGGTAATAATTTATGAAATGTTATTTAATTCCATTATCAGTTATA
TGAAAATGCGATAGCTAGAATGCAGAAACAGAACCTAGCACATCGTGTAC
CCAAAACAGATAATTCCGATAACTTTTTTTCTCAATGGGGATAAAAATTC
CTATTGAAATCTCAATGGGGATATAAATTTTATTGTTATTGTTTCAAGGT
TAAACAATCCAGGCAGGATGGTTTTGAAATTTATTTTATTTTTTTTTTAT
TTTTTTAGGCAAACACCCGGTATCGGTATTAGCAGAGAATTGTTCTAAAA
GAAAGATGGGGATGCCAGAATACGAATGTGTGTTCGAAGGTGGTTCATCA
CACAATAAGACTTTCCTCATCAAATGCACCATACAAAATGTAGACTATCA
ACCTTCAGTCGCATCTCCAAACAAAAAACACGCCAAAGCTCAGGCTGCAA
TGACTGCTCTTAAAATCCTGGGTTTTGATCAATAATAGGCTTTCTACCAC
ATAATTGTCGCGAAGAATTGATACACACCTTAAAGCTTAAACTGTTATAA
ATGCTTTCAATACACTCGATGTTTGTCAATTAAAGGCTTATGTAGCCCAC
ACTAGAGAAGAAACACATTCCAAAATACAGATACAGTGGAGTCTCTATAA
TTCGAACCTCTATAACTCGAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_029552XLOC_029552Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00046282-exon-scaffold_108-1575043694:289457..289851TCONS_00046282-exon-scaffold_108-1575043694:289457..289851Clytia hemisphaericaexon
TCONS_00046282-exon-scaffold_108-1575043694:287260..288455TCONS_00046282-exon-scaffold_108-1575043694:287260..288455Clytia hemisphaericaexon
TCONS_00046282-exon-scaffold_108-1575043694:281868..282056TCONS_00046282-exon-scaffold_108-1575043694:281868..282056Clytia hemisphaericaexon
TCONS_00046282-exon-scaffold_108-1575043694:280912..281133TCONS_00046282-exon-scaffold_108-1575043694:280912..281133Clytia hemisphaericaexon
TCONS_00046282-exon-scaffold_108-1575043694:279942..280044TCONS_00046282-exon-scaffold_108-1575043694:279942..280044Clytia hemisphaericaexon
TCONS_00046282-exon-scaffold_108-1575043694:275845..276003TCONS_00046282-exon-scaffold_108-1575043694:275845..276003Clytia hemisphaericaexon
TCONS_00046282-exon-scaffold_108-1575043694:275181..275593TCONS_00046282-exon-scaffold_108-1575043694:275181..275593Clytia hemisphaericaexon
TCONS_00046282-exon-scaffold_108-1510915933:289457..289851TCONS_00046282-exon-scaffold_108-1510915933:289457..289851Clytia hemisphaericaexon
TCONS_00046282-exon-scaffold_108-1510915933:287260..288455TCONS_00046282-exon-scaffold_108-1510915933:287260..288455Clytia hemisphaericaexon
TCONS_00046282-exon-scaffold_108-1510915933:281868..282056TCONS_00046282-exon-scaffold_108-1510915933:281868..282056Clytia hemisphaericaexon
TCONS_00046282-exon-scaffold_108-1510915933:280912..281133TCONS_00046282-exon-scaffold_108-1510915933:280912..281133Clytia hemisphaericaexon
TCONS_00046282-exon-scaffold_108-1510915933:279942..280044TCONS_00046282-exon-scaffold_108-1510915933:279942..280044Clytia hemisphaericaexon
TCONS_00046282-exon-scaffold_108-1510915933:275845..276003TCONS_00046282-exon-scaffold_108-1510915933:275845..276003Clytia hemisphaericaexon
TCONS_00046282-exon-scaffold_108-1510915933:275181..275593TCONS_00046282-exon-scaffold_108-1510915933:275181..275593Clytia hemisphaericaexon
TCONS_00046282-exon-scaffold_108-1491911889:289457..289851TCONS_00046282-exon-scaffold_108-1491911889:289457..289851Clytia hemisphaericaexon
TCONS_00046282-exon-scaffold_108-1491911889:287260..288455TCONS_00046282-exon-scaffold_108-1491911889:287260..288455Clytia hemisphaericaexon
TCONS_00046282-exon-scaffold_108-1491911889:281868..282056TCONS_00046282-exon-scaffold_108-1491911889:281868..282056Clytia hemisphaericaexon
TCONS_00046282-exon-scaffold_108-1491911889:280912..281133TCONS_00046282-exon-scaffold_108-1491911889:280912..281133Clytia hemisphaericaexon
TCONS_00046282-exon-scaffold_108-1491911889:279942..280044TCONS_00046282-exon-scaffold_108-1491911889:279942..280044Clytia hemisphaericaexon
TCONS_00046282-exon-scaffold_108-1491911889:275845..276003TCONS_00046282-exon-scaffold_108-1491911889:275845..276003Clytia hemisphaericaexon
TCONS_00046282-exon-scaffold_108-1491911889:275181..275593TCONS_00046282-exon-scaffold_108-1491911889:275181..275593Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_108supercontigscaffold_108:275181..289851 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
9.559	8.45557	2.2188	1.41231	6.46236	4.91687	9.54705	10.0115	8.35961	8.67018	13.5074	10.0526	8.63873	8.76017	8.19881	6.86747	11.3818	10.1811	4.97154	5.08044	6.60705	7.40009	10.9318	10.065	8.96479	7.50025	3.55955	2.38535	8.28563	10.6576
Blast
[Close]
BLAST of TCONS_00046282 vs. Swiss-Prot (Human)
Match: SON (Protein SON OS=Homo sapiens GN=SON PE=1 SV=4)

HSP 1 Score: 156.377 bits (394), Expect = 1.415e-38
Identity = 107/353 (30.31%), Postives = 170/353 (48.16%), Query Frame = 2 
Query: 1379 GGNRDLNKFTKLCLEISAKDSKYDSHLAXXXXXXXXXEAE----IHHPF-ISKPAPMMFPXXXXXXXXXXXXXIAMNPAQAIMAGSMNSITANPADIITGPLEKHFPVSAGNDHREKENAKGEEADLPVYEEVDEG-----------PTKPINVSAVIGRRMGAQQRLNANPNDQLARSVLEECDLKLKGWTEKNRKPGKFTGERGV-LMNKKEIAGA-VETWVRKDFFHNLMPVCGGVGMRMLKNMGWKQGTALGKNREGYVAPVTFDVKVGRSGLASQEEQPQRGRGLYGNNSFQRSNLPKKKLAPVNNIGGKHPVSVLAENCSKRKMGMPEYECVFEGGSSHNKTFLIKC 2383
             G   + + T+ C +I+   SK D  +  ++    D+E E     HHPF +S+P P+ F                +N A A      + +T          L K FPVS+G+ HR+KE        +PV +  +E            P++P+++S  +  R  AQ+RL+ N  D  A S+L     ++  W + N  PG+FTG  GV ++ ++++A    + W++KD F    PV GG+G  +++ MGW++G  LGKN+EG   P+  D K  R GL +  E+ Q+  G +               A + ++ GKHPVS L E C+KR+   PE+  V + G  H K FL + 
Sbjct: 2097 SGGATIEELTEKCKQIA--QSKEDDDVIVNKPHVSDEEEEEPPFYHHPFKLSEPKPIFF---------------NLNIAAAKPTPPKSQVT----------LTKEFPVSSGSQHRKKEADSVYGEWVPVEKNGEENKDDDNVFSSNLPSEPVDISTAMSERALAQKRLSENAFDLEAMSMLNRAQERIDAWAQLNSIPGQFTGSTGVQVLTQEQLANTGAQAWIKKDQFLRAAPVTGGMGAVLMRKMGWREGEGLGKNKEGNKEPILVDFKTDRKGLVAVGERAQKRSGNFS--------------AAMKDLSGKHPVSALMEICNKRRWQPPEFLLVHDSGPDHRKHFLFRV 2408
The following BLAST results are available for this feature:
BLAST of TCONS_00046282 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
SON1.415e-3830.31Protein SON OS=Homo sapiens GN=SON PE=1 SV=4[more]
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