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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00046202 ID=TCONS_00046202|Name=TCONS_00046202|organism=Clytia hemisphaerica|type=transcript|length=798bp
TGGTTTCAGAGCAAAAATGAATGACATAGTAAAAAATACAGAACTTTTCA
TCAGCATTATGGGTATGTCAAGGACATCATCCGTTCAAAAGTGGGATCAT
GAAGCTTTCCAACGTGCTTTCAGATGGGCTCATTACTTTGAACaggTTTA
CAAGAAAACAAGGTCGAAGCCCAATATCATGGAAAAGATTTCTAAGCAGC
TTGATATGCTATGCAGTGAGGTGGATGTGAAGTGTGGCCTACAACCAATC
CGGTATGAGGATCTACCACACGTCAGTCAAATCTTGCGCAAAAACCTCTT
GGAAAACCCTCACTTGAATAGCGAATTCTATCTTGAATTAATCAGTCAGT
TGAAAGACCCGCTACAACAGGAAGTGACTTACAAGAAACAGTTGCAAACA
TTGTCAAAGTTGAAAGCTACTCTGCAGATTTTACAATTGATCCAAAAACG
TTTTGAATCGAAACAAGAGAAGAAGGATGAAGAATTGAAAGAAGAGgagg
atgaagatgaagatgaatgtGTTGCTAGTGATTGTCTacatcaccatggc
aataagaAATCACAAATCACTGCAAACGCATCCCTTCTTAGAAAATGTCT
ACTCAATGTCATTGGATCAGATTATTCAGCAtttcaaagaaagaaatatC
AACTTCACTCAAAACTAGACAGCATGTTGAAACACGAGTGTGGGTTGGAT
GTATTACTTTCAGCACTTTTAATTGAAGACAGTGaccaatttgaaaatgt
tacCAAATACATACTAGAATTTGTTGAAGATATTCTTGTACCGAAATG Run BLAST on NCBI transcript from alignment at scaffold_106:473857..476451- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00046202 ID=TCONS_00046202|Name=TCONS_00046202|organism=Clytia hemisphaerica|type=transcript|length=2595bp|location=Sequence derived from alignment at scaffold_106:473857..476451- (Clytia hemisphaerica)
TGGTTTCAGAGCAAAAATGAATGACATAGTAAAAAATACAGAACTTTTCA
TCAGCATTATGGGTATGTCAAGGACATCATCCGTTCAAAAGTGGGATCAT
GAAGCTTTCCAACGTGCTTTCAGATGGGCTCATTACTTTGAACAGGTAAA
AAACATTTTTTGTGCAAGCTTGATTCTTTTCTCTGTAGTTATGATAGCCC
CTTTGGATACCACCCACCGAGACACCTGAATCCTGTGTCATTTTTTGGAG
CCTGCAAAGACAGAAACCTAAGAGTACAAAAAAAGAATTTTGTTCATTTG
TCAAATATCTTCTCCACGAACATTTTGAGAAAGGATGTGTTTTAAATATT
GTCTTAAAAAACTTTTTTTATAGGTTTACAAGAAAACAAGGTCGAAGCCC
AATATCATGGAAAAGATTTCTAAGCAGCTTGATATGCTATGCAGTGAGGT
GGATGTGAAGTGTGGCCTACAACCAATCCGGTATGAGGATCTACCACACG
TCAGTCAAATCTTGCGCAAAAACCTCTTGGAAAACCCTCACTTGAATAGC
GAATTCTATCTTGAATTAATCAGTCAGTTGAAAGACCCGCTACAACAGGA
AGTGACTTACAAGAAACAGTTGCAAACATTGTCAAAGTTGAAAGCTACTC
TGCAGATTTTACAATTGATCCAAAAACGTTTTGAATCGAAACAAGAGAAG
AAGGATGAAGAATTGAAAGAAGAGGAGGATGAAGATGAAGATGAATGTGT
TGCTAGTGATTGTCTACATCACCATGGCAATAAGAAATCACAAATCACTG
CAAACGCATCCCTTCTTAGAAAATGTCTACTCAATGTCATTGGATCAGGT
ATCCCTCAAAATTTCCCCATTTTATGTTAAGCCTTACCACTTTATTCATA
GTCTTTAAAAGTACGGGTATGGCAAAAAAAGATAATACCAAAATTAGAAT
GAAACTCAACATAAATTTCAAATAAAAAAAAGGTTTCAACACAATGATTG
TTTTGATAGAATGGATTGATTTTTTTATGGTTCAACAGAAATTAAATTAA
GGAGACTTAAAGCGGACATGTTTAAAGATGTGATTGTAGTAATATGAAAC
ATGTTTTAACCTGGGCTAATAATCTGAAAATTTTTGAAGAAGTTTCATAC
TTAATCCACTTACATTTTATAAATTAAAACATTTTTTCGCTTTTCAGATT
ATTCAGCATTTCAAAGAAAGAAATATCAACTTCACTCAAAACTAGACAGC
ATGTTGAAACACGAGTGTGGGTTGGATGTATTACTTTCAGCACTTTTAAT
TGAAGACAGTGACCAATTTGAAAATGTTACCAAATACATACTAGAATTTG
TTGAAGGTTGGTAAATTTATTTTAAAGAAGAAAATTTGGTTTAAACTTTC
ATGGAGTGAAGCAGCTTAATTGCTTTTCCCTGTTTGTTGTGACTTTTAGA
ACGCATTTGGTTTATTTTTTCAGTGGACTGAAACAAATATATATTATTGT
AGGGAATTTTGAGCTAAGGAGGATACAATGGGTTTACACAAAGTATTAGT
ACTACAATTATGGTCGAAATATATTGAGATTTTAGTGTATTTTAACGTTT
TTCAGAATTTAAAATTCGGGTGTGATTTGCTATTTTAGCACTTCCACTTT
CTTTCATTGAATATTTCGAGTTTAGAGGGGTTCGGTGGCTATATTCCAAG
CCTTATTGGAGCAAATTTGAGCTTTTAAATACTGAGATCCTAAGGTCCTA
AGTATAAAGTCTCATGTTAAAACTCTACTTTCAAACTGTAGTTTAAGGCG
CTTGAAAATCATTTGTGGTGTTTAAAATTTCGCCGTGATATCCCCTTTGT
CTCAAATATTTTGTCCAATATTGTAGTAATCTAATGGTTATGAGGAAAAC
CCGGGATAAATTTCCCGAGGTCAATTTTTAAATTTTTTGAAATTTGGAAA
TTTGACCGAGGTTAATTTTATATCCAGAATTTCATAAAAATAAGCATGGG
ATTCCTGGTTAATCTCATGGTTTGGATTGAAATTCTAACAATTCTGAAAG
ACGTCAATTTAACACTTGAAATCAATCTGAAATTTTAAAAGAGGTCTCAA
AAAGTCAAAAACGCGAATCGAGTTTTAATTGGATAGTATTCCATTTACTC
AAGCCTTCGAAGTTAATAAGAAATTCGAAAAAGGTGATGAATTTCCAAAC
GATAGAAATTTCACTTTTGCGGGAAATTACAAAAGCTAAAAGGGAATACA
AATTATCGTAAGCAAAAACGTCAATCGAATTTCAATCAACCATGAGATGG
GAGGGAAGGGAGCGCATCGAATAGTAGAGCGTCGTTTATGAGAGTTTCTT
GTCGATGGGGACTTAGAGTATTAATGGAGTATCGAATAACAGAAAGTCGA
TTAAGAGAGCGTCAACTGTAATTACAATTCTATCTGTAAAATTTTGTGTA
CTTTTTAACCACTTATTTAAGAAAATGAAACATGCTTCCACTACAAATTT
ATAACAATAATATCAACTTAGGAAATACATGTTGAAAGTTAACCATAACC
TTACTGTTTTGTTATCTGTCATTCAGATATTCTTGTACCGAAATG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00046202-exon-scaffold_106-1575043694:476307..476451 | TCONS_00046202-exon-scaffold_106-1575043694:476307..476451 | Clytia hemisphaerica | exon |
| TCONS_00046202-exon-scaffold_106-1575043694:475604..476078 | TCONS_00046202-exon-scaffold_106-1575043694:475604..476078 | Clytia hemisphaerica | exon |
| TCONS_00046202-exon-scaffold_106-1575043694:475096..475254 | TCONS_00046202-exon-scaffold_106-1575043694:475096..475254 | Clytia hemisphaerica | exon |
| TCONS_00046202-exon-scaffold_106-1575043694:473857..473875 | TCONS_00046202-exon-scaffold_106-1575043694:473857..473875 | Clytia hemisphaerica | exon |
| TCONS_00046202-exon-scaffold_106-1510915933:476307..476451 | TCONS_00046202-exon-scaffold_106-1510915933:476307..476451 | Clytia hemisphaerica | exon |
| TCONS_00046202-exon-scaffold_106-1510915933:475604..476078 | TCONS_00046202-exon-scaffold_106-1510915933:475604..476078 | Clytia hemisphaerica | exon |
| TCONS_00046202-exon-scaffold_106-1510915933:475096..475254 | TCONS_00046202-exon-scaffold_106-1510915933:475096..475254 | Clytia hemisphaerica | exon |
| TCONS_00046202-exon-scaffold_106-1510915933:473857..473875 | TCONS_00046202-exon-scaffold_106-1510915933:473857..473875 | Clytia hemisphaerica | exon |
| TCONS_00046202-exon-scaffold_106-1491911889:476307..476451 | TCONS_00046202-exon-scaffold_106-1491911889:476307..476451 | Clytia hemisphaerica | exon |
| TCONS_00046202-exon-scaffold_106-1491911889:475604..476078 | TCONS_00046202-exon-scaffold_106-1491911889:475604..476078 | Clytia hemisphaerica | exon |
| TCONS_00046202-exon-scaffold_106-1491911889:475096..475254 | TCONS_00046202-exon-scaffold_106-1491911889:475096..475254 | Clytia hemisphaerica | exon |
| TCONS_00046202-exon-scaffold_106-1491911889:473857..473875 | TCONS_00046202-exon-scaffold_106-1491911889:473857..473875 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_106 | supercontig | scaffold_106:473857..476451 - |
Blast
The following BLAST results are available for this feature:
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