TCONS_00046145 (transcript) - C. hemisphaerica

Overview
NameTCONS_00046145
Unique NameTCONS_00046145
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2338

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00046145 ID=TCONS_00046145|Name=TCONS_00046145|organism=Clytia hemisphaerica|type=transcript|length=2338bp
cttttgtataaaataaaaatatgaacaCAATGCTGATACGGCAAAAAATA
TCCCAGGTCTAAGTATCTTAATGAAACGCATCCATTTCTGGAATGATACT
gataaaattctgaaaataatcCTTCGATAATTTGATAACAATTTATTTTG
GTTTCAGGAAAAGGGAAGGTGTAAAAGCGATACCCTACTATATGGTCCCG
AATAGTAGGTGGTTCAAAACAAAAGGGgttcgaattttttttcaatttaa
caaGCAGAGGGTccgaataaacaggggggggggagttggtagactgaaaa
aaattctaatttttgcTTTTATCTAATTTTATGAACTTTTAAGCGGTTCC
TACTGATAAAATGGAAATCAAACATGGGATAACAAATTCGGACGTTCGAA
AATTATTACACTTTAactgaaaatgagaaaactaGAAAATTAATTAATCA
ATGAACGGGACGGGGGTCTCTTAAAACGAGAGGGGGTCCCTTAAAAGAAC
AGTTGGGTCCTAAAAGGAACGGGTTACGATCTGAAAACCATTGAAAGTTA
ATAAATGGGGTATGTTTATTCGGGACCTAAGAGTAGGGGACTTAGGAATC
TATAAGACAATTGGAAGTTGAAACAATGTAGGGCAAAGCCAATAACATAG
GTCAGAGGGGCAAGAAAAATGACAAAGAATAGAAACTCATTTAGCCTCGT
TAAAGAATCTTCAGAACACAAGAAATCGATATATAATATGAATCTTAAGA
AAGTCGAGTGAACCCTTGCCTTAGAAAATAAGAACCCTGTAAGAAAACAC
aagaaaatacaaacaaaacaaaagtaacaaaatgaaaattttaaaacaca
aaattCTAAAACATTATAAATATCAGCCAATTTGCTTTCAAAGTTAAAAG
TTCTCAGTTTTCGTCGTCAagaaacaagttttttttaaatgtttttcttc
acTACAGATAAATTTGAATCCTATACCGAGAGCATAATATATCAATTCTC
CATGGCAACAAAGTACAAGGTTACTCTTCATGGTCACCCATATCCTCCTC
GTCACTGCTTTCATCATCAGAGCAACCACACTGGCAACACGCTCATCAAA
GGAAGCTCCTTGATATTCTTCAGGGCTTGTCGCTTACCATGCATACCCAT
ATAAAGtttcttcaaaaagtataaaacaTTAGGTGTTGCTTTCCAGTTCA
AATGTTCGTAATCTACAATGTTCCAAGCCTCGTTTTGAGTACCAGCAGCA
ACATATTGAGGCGTTTGTTGCCCCAGCAGCACGGACGAATTAAGTAAACC
AGGAATGATGAACTTGTTGACTTTATCAATGTGTTTGCCTAAGGCAACCA
ATTGAATCGCTAAGGTTTGGATCTTCTTGTCCATGCCAGGGGAAATAGCT
TCTTTGATGTGCTCAAGAGCCAGCCAAACACCATTCAGCTTCAACACAGG
CGAATCTTCACCTAACTTAGGATCAGTGCCCAGAAGAAAAGCATCGTAAG
ATGCTTTATCTAGTTTCAACTGTCGTATTAGTTTATATTTGATGAGGAAT
AGGTCAACGTACCTGTGAACATCGGTGTGGTTGGTCAGTTTAAGCTCAGA
CAACGATTCGTACATATCCTCGCCCTTCAGATTGCAATACGGTAGCTTCA
TGTCATAACAACACGAAATGAGATCTCGATCTTGCCACCATTTCAAGAAA
TCATATGCTTCTTGAACTTCCCCTAAAATACAAAGTGTCGAGGGAATGTG
CAAACGAACACCGAGGTTATCTCCACGACACAACCAGATCAAATCCAACA
TATGTTCGACAGAAAGCTCTAAAGCCAGTTTCGAGTTATTATTCATGCCA
CATGAACGTAGCTTTAAAGCAAGTCCCAGTCTCTCCTTACAATAGTTTCT
TGGTTCAACCAATCTCCAGAAAATTCCAATAGCAACTTTGAAAAGACTCC
CAGGTAGAAGGTCTTCAAGTTCATAAAACTGTCGTAAAGTTTCAGCTTCT
TTTGCCACAATCTTGGTACGTCTTTTGATTTCATTGCAATGAGTTTTGTG
TTTCACCCAATGATCTTTTTGACATTCTTTGGAGCAATATTTGACGGCCG
TACATCTTGAACATCTGTTTTCGGCATCATCTTTTGAACAGTTACTGCAT
TTGAATGAAGTGCTTCTTGGAGATACAAAAACGTCactaatttttctttc
attcatttcaagtttttcaagtCAGCTAAAAAATCAAGAACTGGAAAATT
AAAATGCATGAAAAATTATAACACAGAACTTTcattaggctacgtcatat
ctgcCTTCGCtccgagcgtaaaactcctcctcttcaag
Run BLAST on NCBI

transcript from alignment at scaffold_106:304198..306599+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00046145 ID=TCONS_00046145|Name=TCONS_00046145|organism=Clytia hemisphaerica|type=transcript|length=2402bp|location=Sequence derived from alignment at scaffold_106:304198..306599+ (Clytia hemisphaerica)
cttttgtataaaataaaaatatgaacaCAATGCTGATACGGCAAAAAATA
TCCCAGGTCTAAGTATCTTAATGAAACGCATCCATTTCTGGAATGATACT
gataaaattctgaaaataatcCTTCGATAATTTGATAACAATTTATTTTG
GTTTCAGGAAAAGGGAAGGTGTAAAAGCGATACCCTACTATATGGTCCCG
AATAGTAGGTGGTTCAAAACAAAAGGGgttcgaattttttttcaatttaa
caaGCAGAGGGTccgaataaacaggggggggggagttggtagactgaaaa
aaattctaatttttgcTTTTATCTAATTTTATGAACTTTTAAGCGGTTCC
TACTGATAAAATGGAAATCAAACATGGGATAACAAATTCGGACGTTCGAA
AATTATTACACTTTAactgaaaatgagaaaactaGAAAATTAATTAATCA
ATGAACGGGACGGGGGTCTCTTAAAACGAGAGGGGGTCCCTTAAAAGAAC
AGTTGGGTCCTAAAAGGAACGGGTTACGATCTGAAAACCATTGAAAGTTA
ATAAATGGGGTATGTTTATTCGGGACCTAAGAGTAGGGGACTTAGGAATC
TATAAGACAATTGGAAGTTGAAACAATGTAGGGCAAAGCCAATAACATAG
GTCAGAGGGGCAAGAAAAATGACAAAGAATAGAAACTCATTTAGCCTCGT
TAAAGAATCTTCAGAACACAAGAAATCGATATATAATATGAATCTTAAGA
AAGTCGAGTGAACCCTTGCCTTAGAAAATAAGAACCCTGTAAGAAAACAC
aagaaaatacaaacaaaacaaaagtaacaaaatgaaaattttaaaacaca
aaattCTAAAACATTATAAATATCAGCCAATTTGCTTTCAAAGTTAAAAG
TTCTCAGTTTTCGTCGTCAagaaacaagttttttttaaatgtttttcttc
acTACAGATAAATTTGAATCCTATACCGAGAGCATAATATATCAATTCTC
CATGGCAACAAAGTACAAGGTTACTCTTCATGGTCACCCATATCCTCCTC
GTCACTGCTTTCATCATCAGAGCAACCACACTGGCAACACGCTCATCAAA
GGAAGCTCCTTGATATTCTTCAGGGCTTGTCGCTTACCATGCATACCCAT
ATAAAGtttcttcaaaaagtataaaacaTTAGGTGTTGCTTTCCAGTTCA
AATGTTCGTAATCTACAATGTTCCAAGCCTCGTTTTGAGTACCAGCAGCA
ACATATTGAGGCGTTTGTTGCCCCAGCAGCACGGACGAATTAAGTAAACC
AGGAATGATGAACTTGTTGACTTTATCAATGTGTTTGCCTAAGGCAACCA
ATTGAATCGCTAAGGTTTGGATCTTCTTGTCCATGCCAGGGGAAATAGCT
TCTTTGATGTGCTCAAGAGCCAGCCAAACACCATTCAGCTTCAACACAGG
CGAATCTTCACCTAACTTAGGATCAGTGCCCAGAAGAAAAGCATCGTAAG
ATGCTTTATCTAGTTTCAACTGTCGTATTAGTTTATATTTGATGAGGAAT
AGGTCAACGTACCTGTGAACATCGGTGTGGTTGGTCAGTTTAAGCTCAGA
CAACGATTCGTACATATCCTCGCCCTTCAGATTGCAATACGGTAGCTTCA
TGTCATAACAACACGAAATGAGATCTCGATCTTGCCACCATTTCAAGAAA
TCATATGCTTCTTGAACTTCCCCTAAAATACAAAGTGTCGAGGGAATGTG
CAAACGAACACCGAGGTTATCTCCACGACACAACCAGATCAAATCCAACA
TATGTTCGACAGAAAGCTCTAAAGCCAGTTTCGAGTTATTATTCATGCCA
CATGAACGTAGCTTTAAAGCAAGTCCCAGTCTCTCCTTACAATAGTTTCT
TGGTTCAACCAATCTCCAGAAAATTCCAATAGCAACTTTGAAAAGACTCC
CAGGTAGAAGGTCTTCAAGTTCATAAAACTGTCGTAAAGTTTCAGCTTCT
TTTGCCACAATCTTGGTACGTCTTTTGATTTCATTGCAATGAGTTTTGTG
TTTCACCCAATGATCTTTTTGACATTCTTTGGAGCAATATTTGACGGCCG
TACATCTTGAACATCTGTTTTCGGCATCACCTTTTGAACAGTTACTGCAT
TTNTTTGACGGCCGTACATCTTGAACATCTGTTTTCGGCATCATCTTTTG
AACAGTTACTGCATTTGAATGAAGTGCTTCTTGGAGATACAAAAACGTCa
ctaatttttctttcattcatttcaagtttttcaagtCAGCTAAAAAATCA
AGAACTGGAAAATTAAAATGCATGAAAAATTATAACACAGAACTTTcatt
aggctacgtcatatctgcCTTCGCtccgagcgtaaaactcctcctcttca
ag
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_029477XLOC_029477Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00046145-exon-scaffold_106-1491911889:304198..306300TCONS_00046145-exon-scaffold_106-1491911889:304198..306300Clytia hemisphaericaexon
TCONS_00046145-exon-scaffold_106-1510915933:304198..306300TCONS_00046145-exon-scaffold_106-1510915933:304198..306300Clytia hemisphaericaexon
TCONS_00046145-exon-scaffold_106-1575043694:304198..306300TCONS_00046145-exon-scaffold_106-1575043694:304198..306300Clytia hemisphaericaexon
TCONS_00046145-exon-scaffold_106-1491911889:306365..306599TCONS_00046145-exon-scaffold_106-1491911889:306365..306599Clytia hemisphaericaexon
TCONS_00046145-exon-scaffold_106-1510915933:306365..306599TCONS_00046145-exon-scaffold_106-1510915933:306365..306599Clytia hemisphaericaexon
TCONS_00046145-exon-scaffold_106-1575043694:306365..306599TCONS_00046145-exon-scaffold_106-1575043694:306365..306599Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_106supercontigscaffold_106:304198..306599 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.53716	1.43161	0.496038	0.182805	55.7601	49.4971	14.3123	18.5207	3.65115	3.65461	3.84546	2.70514	1.96064	1.63205	2.20591	2.09538	2.76593	2.71018	0.714499	0.688808	2.17692	2.39937	1.59332	1.87536	4.01901	5.5637	0.558979	0.237816	1.13744	0.831198
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00046145 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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