TCONS_00046087 (transcript) - C. hemisphaerica

Overview
NameTCONS_00046087
Unique NameTCONS_00046087
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length249

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00046087 ID=TCONS_00046087|Name=TCONS_00046087|organism=Clytia hemisphaerica|type=transcript|length=249bp
AAgtgtttcatttttttagaacactgaaaattaaaaatatgacTTTAACA
AATACAAATGGTATCTTTTTCAATGATGTCTCAAAACTCTGTGTATTGGA
GCCTGAAGTGAACCAACAGACTCATGAACTCAAAACAGAATGTAAAGATT
TTGTTGAGAAAATATCCGAGTTTCAAGGTAAGATGGTTGTCACCAGAAAT
TcttattgatttttatgttattACGCGGTAGAAACTTTCCATCCATGTG
Run BLAST on NCBI

transcript from alignment at scaffold_105:742..990

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00046087 ID=TCONS_00046087|Name=TCONS_00046087|organism=Clytia hemisphaerica|type=transcript|length=249bp|location=Sequence derived from alignment at scaffold_105:742..990 (Clytia hemisphaerica)
CACATGGATGGAAAGTTTCTACCGCGTaataacataaaaatcaataagAA
TTTCTGGTGACAACCATCTTACCTTGAAACTCGGATATTTTCTCAACAAA
ATCTTTACATTCTGTTTTGAGTTCATGAGTCTGTTGGTTCACTTCAGGCT
CCAATACACAGAGTTTTGAGACATCATTGAAAAAGATACCATTTGTATTT
GTTAAAgtcatatttttaattttcagtgttctaaaaaaatgaaacacTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_029431XLOC_029431Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00046087-exon-scaffold_105-1491911889:742..990TCONS_00046087-exon-scaffold_105-1491911889:742..990Clytia hemisphaericaexon
TCONS_00046087-exon-scaffold_105-1510915933:742..990TCONS_00046087-exon-scaffold_105-1510915933:742..990Clytia hemisphaericaexon
TCONS_00046087-exon-scaffold_105-1575043694:742..990TCONS_00046087-exon-scaffold_105-1575043694:742..990Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_105supercontigscaffold_105:742..990 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
45.1731	49.4325	72.4895	88.1421	1.05032	0	0	0.937433	89.1067	72.8831	51.6942	64.4841	34.1291	30.5267	26.6338	24.205	32.7419	48.6627	41.7132	49.0773	44.131	37.4649	27.6833	40.3374	2.50864	0.7463	45.9238	45.1575	41.1474	41.5703
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00046087 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top