TCONS_00045957 (transcript) - C. hemisphaerica

Overview
NameTCONS_00045957
Unique NameTCONS_00045957
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2003

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00045957 ID=TCONS_00045957|Name=TCONS_00045957|organism=Clytia hemisphaerica|type=transcript|length=2003bp
TCTACCTAAAGCAGTCTAAAAGGATGTCACATTTCCTACAACTGACAACA
AAAGATGGGAGGTACCTCAAACGGATCAaataatgtttgttttttatctg
aCAAAGTAATAAGTAACAAAAATACCTCATACCAACTCTTTAGGGCAGAT
ATGTTATaaacagaatcaagtaaagatGTGAAGATTGGCCAATTGACAAC
ACAAAATTGTTTATTGATgacataacaaaaataaaatgagtGTCGTCTTC
CCAAAGAAATATAAACTCGTTTCTTTGGGTGAACAATCAGtcgGCAAGAC
ATCTCTGATCACGAGGTTTATGTATGACCATTTCGAAGGGAATTACCAGG
CAACCATTGGTATAGATTTCTTGGTCAAGACAATACCCATAAACGGGAGA
GCGGTCCGTTTGCAACTATGGGACACAGCGGGACAAGAACGCTTTCGAAG
TTTGATTCCATGCTATATAAGAGAGTCTGACGTCGTTTTAATTGTATATG
ATATTACGAGTCGTGCTTCATTTGACCACACCCAAAAATGGATCGATGAC
GTCAAAGAAGAAcgaggtgatgacgtcatcattttattGATTGGCAATAA
AACAGACCTAGAGGAAAAAAGacAAGTGAGTTGCAATGAAGCAGAAGAAA
AAGCGAAAGAGCTTGAAATCCATTTCATCGAGACGAGCGCAAAGACTGGT
TATAATGTCAAAGAGTTATTCGGTAAGATCGCGGCTACTTTGCCGGTACC
GAATGAAGAGGAAGGTCAGCAAAAAGAAGAACATATCACATTGCTTCCAT
CCAAGGATCACCAGGATGAATATGAAGGCTATTGTCAAGCTTGTTGAAAA
AGTTACTGGATCTTGTAGTACTCATAAAACGTCCCTGAAAGGAGATCGAA
TGGTTAtaaaagtacacgttttttttttataagaccatcttaaatttttg
aagcctttgcatGTTCTTAGgtttgtaagcctaaaaaccgttcttcaaat
gttcttattttgcgAACATTTTTACTGTGTGCAATTTCTAAAGAAATCTA
GCGTTTCAGAGTACGCGAAACCTTAGCATgttctaaaattgttcttaata
ttttggNTCTAAAGAAATTTAGCATTCTAGAGTCCACGAAGTCTTAACAT
gttctaaaattgttcttaacattttgtccatcgaagctttatcttcttat
atagtttgttgttataaaaagGCGTGTAACCAACGTTTTGTAAAGAATTT
TAGGATAGGATGTATTGATGTATTTATTTCGATTTTGTTTtcgtatattt
ttcaaattggtctcgcctaaccAAAACTAACCTCTTGTGAGAATATATTC
CGATGGGAGAAAGTAATTACTACAGGTCCCTCTCCGTTATACGGCAACGC
AGTACTCTTTCATTAAATTTGGTAAATTATAACTAGATTTTTTTGGATAT
TATGGTACCAACTTCATTGAAATCTCTTTGACGACTTTATTTCATCGTCA
Agacgaaagtttttttttattttacatgctttagtaatatttttttacat
ttatttgatgaaaatatttttataaactatttaattttttcattttggaa
taTTATGAATTGTAgttcttgaaaaataaaaattatttgtgCAACATTTA
AACAGATTTCCATACAATCAGCCATCCACAGATTTTCGTAACAATCAGTC
ATTTCCAGTTTTCTGACACGAAATTTTAcctaattttaaaaattcagtNT
TGTGCAACATTTAAACAGATTTCCATACAATCAGCCATCCACAGATTTTC
GTAACAATCAGTCATTTCCAGTTTTCTGACACGAAATTTTACCTAATTCT
AAAAATTCAGTACACCCAGAAAAAAAAGGACCAAGGACCAAGATCTATTC
CAATTCACAACGAGGAGACTGATTTTGGCCAATACTAATATAATGTTACG
TAAGTTTGCAAAAACTAAACAAACAGTACATCTTAGGTAGTACAAAATCT
AAA
Run BLAST on NCBI

protein sequence of TCONS_00045957-protein

>TCONS_00045957-protein ID=TCONS_00045957-protein|Name=TCONS_00045957-protein|organism=Clytia hemisphaerica|type=polypeptide|length=203bp
MSVVFPKKYKLVSLGEQSVGKTSLITRFMYDHFEGNYQATIGIDFLVKTI
PINGRAVRLQLWDTAGQERFRSLIPCYIRESDVVLIVYDITSRASFDHTQ
KWIDDVKEERGDDVIILLIGNKTDLEEKRQVSCNEAEEKAKELEIHFIET
SAKTGYNVKELFGKIAATLPVPNEEEGQQKEEHITLLPSKDHQDEYEGYC
QAC
Run BLAST on NCBI

transcript from alignment at scaffold_104:298386..304581-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00045957 ID=TCONS_00045957|Name=TCONS_00045957|organism=Clytia hemisphaerica|type=transcript|length=6196bp|location=Sequence derived from alignment at scaffold_104:298386..304581- (Clytia hemisphaerica)
TCTACCTAAAGCAGTCTAAAAGGATGTCACATTTCCTACAACTGACAACA
AAAGATGGGAGGTACCTCAAACGGATCAAATAATGTTTGTTTTTTATCTG
ACAAAGTAATAAGTAACAAAAATACCTCATACCAACTCTTTAGGGCAGAT
ATGTTATAAACAGAATCAAGTAAAGATGTGAAGATTGGCCAATTGACAAC
ACAAAATTGTTTATTGATGACATAACAAAAATAAAATGAGTGTCGTCTTC
CCAAAGAAATATAAACTCGTTTCTTTGGGTGAACAATCAGGTAAGGATTT
CGTCATTCTCCTTGGTGGGATGTGCCATGATTGGTGTCGCTATAGTCGTT
TAGGAGAACATGACGGTCTATTGAATAACAAATTACTCCAGCATAACAAC
CCTGTGTCACAGACCCATGGGGCTCCAGCCCCACTGGGAAATTTGGCCAA
AACTTCGTCACTGGCACTAAAAATACCCCAAAATTTCAGCCCCACTGGGA
AATTGGCTTTGATTACATCCCCATTCAAATTTCACTGTAAGAAATTGCAC
TCCCACAAAATTTTTTAACCTTGGAACAATAGAATTTCTATCCCCATTGG
GATTACGAAAGTAATTTTTATCCCCGCTCTGGGAAAAAGTTTCACCAGGG
CTGTGAGACAGGGGTGTATCATACATTACTTTCATTCAGCCATTACAAAC
AGGATAAATCATCTTGTTCCTAGTTGTGTTGTCATTAACAAAGTTTATGC
TTGAGTAATTAGTTATTCAAAAGACCGTCGCGTTCTCCCAAACGACTATT
AGCTCTCGCGCTCTCTTTATTCTGAGAATGTCTTTGGCATTTAACTGGTG
GACCTTTAGACTTTTACTTCTTTAAGATATTTGGATTCGATCTAGGAAGC
ACTTGATTTCGAGAAATATTTTCATTTTTCAGTCGGCAAGACATCTCTGA
TCACGAGGTTTATGTATGACCATTTCGAAGGGAATTACCAGGTATAATTA
GATTTTCAGTTGCATCATATGTCATTTGCTGCCAATACCAATGAGTACGG
TTATTCCAATTCTATCCGTGGATAGCCAGTACTTTCCCACTAATTGGGAG
CCAATCCTTAACTCTGTGGACTCAAACTTACACAAACTTAAACTTACAGA
TTCGGAGAAGTGATAAAGTGATTTATATTTTTGTAACATTCTTTCAACTG
TACGGTGAAAAGCTATGAGAAATAACTTGATTTTGTTTTTCATAGGCAAC
CATTGGTATAGATTTCTTGGTCAAGACAATACCCATAAACGGGAGAGCGG
TACGTTTGAATGTTTTTGTGGTGAATGTACTCCAAAATACGTCTATTTTC
TGTATCTCAAATAGCCTAGTCTTCTGTTCATCCTCTAGCGAAAAGAGTTT
CTGTAACAATTTAATATTATTTTTTACAAACTGTACGTTTGATTGCTTTT
GTGATGAGAATCCTACGTGGATTCTCAAATAAAAGCCTAAGGCTTCTGTT
CATCCTCTAGCGAAAAGAGTTTATCTAACAATTTTAAATTATTTGTTACA
AACGGTACGTTTGATTGCTTTTGTGATGAAAATCCTACGTGGATTCTCAA
ATAAAAGCCTAAGGCTTCTGTTCATCCTCTAGCGAAAAGAGTTTTTTATA
GAAAATACCTCTACAGGGTGTCCCTAATAAAAGTATCGAGTTTGAACATG
CGATTGAGTAAAAAAGTTTGTGTGTGTTATCGCTAAAATATAAGAACGTT
CTCCATCACATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNAAAAAGAGGGAGAGCTTAAAATACAATTTT
GTGAATACACACTTAAAACTTTCTACTCAATCGCATGTTCAAACTCGATA
CTTTTATTAGGGACACCCTGTATAGAGGTCTGCGATTCAGATAAATGAAA
GTCCTTAAGTAAGATAATATGTCGACATAGATACCTTTTGCTCCTTAGCC
TAGGCTATTCGCTTCCAATACGTTATCGTCCGATCTTTAGCAAACTTCCT
GGCATCTAAATATAATTTCTCCTTCTTTATCTCGAAACAGGTCCGTTTGC
AACTATGGGACACAGCGGGACAAGAACGCTTTCGAAGTTTGATTCCATGC
TATATAAGAGAGTCTGACGTCGTTTTAATTGTATATGATATTACGAGTAA
GAAAACATATTTTTCTTAATCATTATCTCAAATCTTAGATTCTTCCATGC
AAAGTGAACCCGATGCATTGGTGGTTGCCCAGGCTAAAGCTCTAATAAAG
AGAGACGACCAATTTCCAATCGGAGAGAATTGATAGTCGGCATTTAATGT
GCTGCATCCCCAGTGTGTTCATAGACCATTAATCCTTACACACTGAAAAT
TACAGTTCGACCCAACGTCGTCCAGACCCTCCCCACTGAAAAGTCCGTTG
AGCGATGAGGCGAAATTCCGTAATCTAAACCTTCCAGATAGTCCTTTAGA
GCTTTAGCGTGTCGGTAGAAAACTTCTAAATCAAATGTCAGATTTTAATT
GCATTGTCATTAACGCAAGATAAAGTAACACATTGAGCTTTATACAAAAG
GCGTGACCGTGAAAGTTAGAGACTAGACCCAGACCCCCACAGGTGCAAGG
TTGCAGGTGTTTTCTTCAAAATGATTTGGGTGTCAGCAGAGTTGTTGAAA
TTGACGGTTGCTATAAAAAAACAACTTACCTTGCTACTGTTATTCTTTCG
TCACTAAGGTCGTGCTTCATTTGACCACACCCAAAAATGGATCGATGACG
TCAAAGAAGAACGAGGTGATGACGTCATCATTTTATTGATTGGCAATAAA
ACAGACCTAGAGGAAAAAAGGTAAACTATTTTTTCGGCTTTAGCTCTTAA
AACTTGAATCTGACTTGAGACAACAAAAAGCAATATAATTAAAGTTTGGG
AAAATAAGAAGAAGTAAGAAACTCAAGAAGACGCAAACCGTCGAAACAAT
ATATATAACATTAAATGAACACTGAATCGCTACAGTGTCATAAAGTCCAA
GATAAATATAGTCTGAATTGCAGACCTCTATAGATATACTTCCTATATAG
GTCTGTTTAATAGTGTGCGGCCTGCCTTCCCGCTATGGTGGCTCTTATGG
TGGCCGGTTTTACCTTTTTTGGCGAGTTACGGAAAGGGACGAGTTATGAC
GAGTTAGAAAATAAGAAACTTTTTTTCGCTAGAGGATGAGTAGAAACCTA
ACATACATACTATGCCCGAGCCAACCATGTATATCATTGGCGATCTTTTT
TGTTCCATTTGTGGAATGCCTTTCTTTAAGTTGAAGTAAGTAAGAGAAAA
CCATCACCGATCATTCGGGAATCTTCAACCCATAAAGTTATTCAGTTCAA
TTTTTTTCTGGATTTTTAATTTCTAACCTGTAAAAAGAAGGAATTAAAAT
TATAGTTTTTCATTTTCAACAGTTTTGTAAGAATGTAACCTAACCCAGGT
CAAAGTTCTACTAAATTGGGTTTTAATCACTGACCTTTATACCTTATCGG
GGAAAACTTCGTCGGGGAAAAGTGACGAAATTTTGGACAAGTGACGAATA
TTTTCCCGGACGAAAATTTTCCCCGGCCTTAATGCGTTTACCAACTACCA
GCAAGTGACGAACTTTTCCCCGATGAAAATTTTCCCGACGAAAATTTTCC
CCGACGAAGTTTTTCCCGATAAGGTATACCATGGACAAAGTTTCTCAATC
CTGGCCAAGCAAATATCTTTGATCGGAGTTTTGAAGGTGGTGCCCTAATG
GTAGCACTACTCAATAACGGTGTAATCTACTTTCCTAGAACACTTTTGAT
GATGTAGCGCCGTTAAATGTTAATCAAAGATGGCGCATGAGGCTTTGTCC
AGGGATATATGAAGCTCAGTGGTTTTAACTAGGGGAAAAATATGATTCTG
AATATGATTCTTTTTTCAAATTTCAGACAAGTGAGTTGCAATGAAGCAGA
AGAAAAAGCGAAAGAGCTTGAAATCCATTTCATCGAGACGAGCGCAAAGA
CTGGTTATAATGTCAAAGAGGTGAGGTTTAAAGGCTATTTTTCAACAAAA
TATCCTTAGACTGTAAGTACACTCTCCCAACAACTCTATCTAGCAGACTG
CGAATTTTGTCAAAAGCCTAGGGCGTAAAATATAACATGATAGGAAAGTG
TTCTACTACATATAAAATACAGTTGACGCTCTCTAATTCGACGTTCTACT
ATTCGATACGCTCTATTATTCGATAATATTGAAAGTCCCTGTCAACAAGA
AACTCTTATAAACGACGCTCTACTATTCGGTACGCTCCCTTATTCGATGA
AAGTCAGATTCCCCTTGAAAATCAAATTAGAGAGCGTCAACTGTAGATAC
AATAGGAGATAAATCATTGCATTGAAATCAAACTAAATAGTGCTCGATGA
TAAACAAAAAAGATACCAACCAGAGCCAAGTAATAATATAGGAGATTAAT
AATTCTCTGACAAATTTTGAACAGCATTTTTATTTACTGAGCCATTTCTC
TTTTTCAGTTATTCGGTAAGATCGCGGCTACTTTGCCGGTACCGAATGAA
GAGGAAGGTCAGCAAAAAGAAGAACATATCACATTGCTTCCATCCAAGGA
TCACCAGGATGAATATGAAGGCTATTGTCAAGCTTGTTGAAAAAGTTACT
GGATCTTGTAGTACTCATAAAACGTCCCTGAAAGGAGATCGAATGGTTAT
AAAAGTACACGTTTTTTTTTTATAAGACCATCTTAAATTTTTGAAGCCTT
TGCATGTTCTTAGGTTTGTAAGCCTAAAAACCGTTCTTCAAATGTTCTTA
TTTTGCGAACATTTTTACTGTGTGCAATTTCTAAAGAAATCTAGCGTTTC
AGAGTACGCGAAACCTTAGCATGTTCTAAAATTGTTCTTAATATTTTGGN
TCTAAAGAAATTTAGCATTCTAGAGTCCACGAAGTCTTAACATGTTCTAA
AATTGTTCTTAACATTTTGTCCATCGAAGCTTTATCTTCTTATATAGTTT
GTTGTTATAAAAAGGCGTGTAACCAACGTTTTGTAAAGAATTTTAGGATA
GGATGTATTGATGTATTTATTTCGATTTTGTTTTCGTATATTTTTCAAAT
TGGTCTCGCCTAACCAAAACTAACCTCTTGTGAGAATATATTCCGATGGG
AGAAAGTAATTACTACAGGTCCCTCTCCGTTATACGGCAACGCAGTACTC
TTTCATTAAATTTGGTAAATTATAACTAGATTTTTTTGGATATTATGGTA
CCAACTTCATTGAAATCTCTTTGACGACTTTATTTCATCGTCAAGACGAA
AGTTTTTTTTTATTTTACATGCTTTAGTAATATTTTTTTACATTTATTTG
ATGAAAATATTTTTATAAACTATTTAATTTTTTCATTTTGGAATATTATG
AATTGTAGTTCTTGAAAAATAAAAATTATTTGTGCAACATTTAAACAGAT
TTCCATACAATCAGCCATCCACAGATTTTCGTAACAATCAGTCATTTCCA
GTTTTCTGACACGAAATTTTACCTAATTTTAAAAATTCAGTNTTGTGCAA
CATTTAAACAGATTTCCATACAATCAGCCATCCACAGATTTTCGTAACAA
TCAGTCATTTCCAGTTTTCTGACACGAAATTTTACCTAATTCTAAAAATT
CAGTACACCCAGAAAAAAAAGGACCAAGGACCAAGATCTATTCCAATTCA
CAACGAGGAGACTGATTTTGGCCAATACTAATATAATGTTACGTAAGTTT
GCAAAAACTAAACAAACAGTACATCTTAGGTAGTACAAAATCTAAA

Coding sequence (CDS) from alignment at scaffold_104:298386..304581-

>TCONS_00045957 ID=TCONS_00045957|Name=TCONS_00045957|organism=Clytia hemisphaerica|type=CDS|length=4284bp|location=Sequence derived from alignment at scaffold_104:298386..304581- (Clytia hemisphaerica)
TTATTCGGTAAGATCGCGGCTACTTTGCCGGTACCGAATGAAGAGGAAGG
TCAGCAAAAAGAAGAACATATCACATTGCTTCCATCCAAGGATCACCAGG
ATGAATATGAAGGCTATTGTCAAGCTTGTTGAACAAGTGAGTTGCAATGA
AGCAGAAGAAAAAGCGAAAGAGCTTGAAATCCATTTCATCGAGACGAGCG
CAAAGACTGGTTATAATGTCAAAGAGGTCGTGCTTCATTTGACCACACCC
AAAAATGGATCGATGACGTCAAAGAAGAACGAGGTGATGACGTCATCATT
TTATTGATTGGCAATAAAACAGACCTAGAGGAAAAAAGGTCCGTTTGCAA
CTATGGGACACAGCGGGACAAGAACGCTTTCGAAGTTTGATTCCATGCTA
TATAAGAGAGTCTGACGTCGTTTTAATTGTATATGATATTACGAGCAACC
ATTGGTATAGATTTCTTGGTCAAGACAATACCCATAAACGGGAGAGCGTC
GGCAAGACATCTCTGATCACGAGGTTTATGTATGACCATTTCGAAGGGAA
TTACCAGATGAGTGTCGTCTTCCCAAAGAAATATAAACTCGTTTCTTTGG
GTGAACAATCAGTTATTCGGTAAGATCGCGGCTACTTTGCCGGTACCGAA
TGAAGAGGAAGGTCAGCAAAAAGAAGAACATATCACATTGCTTCCATCCA
AGGATCACCAGGATGAATATGAAGGCTATTGTCAAGCTTGTTGAACAAGT
GAGTTGCAATGAAGCAGAAGAAAAAGCGAAAGAGCTTGAAATCCATTTCA
TCGAGACGAGCGCAAAGACTGGTTATAATGTCAAAGAGGTCGTGCTTCAT
TTGACCACACCCAAAAATGGATCGATGACGTCAAAGAAGAACGAGGTGAT
GACGTCATCATTTTATTGATTGGCAATAAAACAGACCTAGAGGAAAAAAG
GTCCGTTTGCAACTATGGGACACAGCGGGACAAGAACGCTTTCGAAGTTT
GATTCCATGCTATATAAGAGAGTCTGACGTCGTTTTAATTGTATATGATA
TTACGAGCAACCATTGGTATAGATTTCTTGGTCAAGACAATACCCATAAA
CGGGAGAGCGTCGGCAAGACATCTCTGATCACGAGGTTTATGTATGACCA
TTTCGAAGGGAATTACCAGATGAGTGTCGTCTTCCCAAAGAAATATAAAC
TCGTTTCTTTGGGTGAACAATCAGTTATTCGGTAAGATCGCGGCTACTTT
GCCGGTACCGAATGAAGAGGAAGGTCAGCAAAAAGAAGAACATATCACAT
TGCTTCCATCCAAGGATCACCAGGATGAATATGAAGGCTATTGTCAAGCT
TGTTGAACAAGTGAGTTGCAATGAAGCAGAAGAAAAAGCGAAAGAGCTTG
AAATCCATTTCATCGAGACGAGCGCAAAGACTGGTTATAATGTCAAAGAG
GTCGTGCTTCATTTGACCACACCCAAAAATGGATCGATGACGTCAAAGAA
GAACGAGGTGATGACGTCATCATTTTATTGATTGGCAATAAAACAGACCT
AGAGGAAAAAAGGTCCGTTTGCAACTATGGGACACAGCGGGACAAGAACG
CTTTCGAAGTTTGATTCCATGCTATATAAGAGAGTCTGACGTCGTTTTAA
TTGTATATGATATTACGAGCAACCATTGGTATAGATTTCTTGGTCAAGAC
AATACCCATAAACGGGAGAGCGTCGGCAAGACATCTCTGATCACGAGGTT
TATGTATGACCATTTCGAAGGGAATTACCAGATGAGTGTCGTCTTCCCAA
AGAAATATAAACTCGTTTCTTTGGGTGAACAATCAGTTATTCGGTAAGAT
CGCGGCTACTTTGCCGGTACCGAATGAAGAGGAAGGTCAGCAAAAAGAAG
AACATATCACATTGCTTCCATCCAAGGATCACCAGGATGAATATGAAGGC
TATTGTCAAGCTTGTTGAACAAGTGAGTTGCAATGAAGCAGAAGAAAAAG
CGAAAGAGCTTGAAATCCATTTCATCGAGACGAGCGCAAAGACTGGTTAT
AATGTCAAAGAGGTCGTGCTTCATTTGACCACACCCAAAAATGGATCGAT
GACGTCAAAGAAGAACGAGGTGATGACGTCATCATTTTATTGATTGGCAA
TAAAACAGACCTAGAGGAAAAAAGGTCCGTTTGCAACTATGGGACACAGC
GGGACAAGAACGCTTTCGAAGTTTGATTCCATGCTATATAAGAGAGTCTG
ACGTCGTTTTAATTGTATATGATATTACGAGCAACCATTGGTATAGATTT
CTTGGTCAAGACAATACCCATAAACGGGAGAGCGTCGGCAAGACATCTCT
GATCACGAGGTTTATGTATGACCATTTCGAAGGGAATTACCAGATGAGTG
TCGTCTTCCCAAAGAAATATAAACTCGTTTCTTTGGGTGAACAATCAGTT
ATTCGGTAAGATCGCGGCTACTTTGCCGGTACCGAATGAAGAGGAAGGTC
AGCAAAAAGAAGAACATATCACATTGCTTCCATCCAAGGATCACCAGGAT
GAATATGAAGGCTATTGTCAAGCTTGTTGAACAAGTGAGTTGCAATGAAG
CAGAAGAAAAAGCGAAAGAGCTTGAAATCCATTTCATCGAGACGAGCGCA
AAGACTGGTTATAATGTCAAAGAGGTCGTGCTTCATTTGACCACACCCAA
AAATGGATCGATGACGTCAAAGAAGAACGAGGTGATGACGTCATCATTTT
ATTGATTGGCAATAAAACAGACCTAGAGGAAAAAAGGTCCGTTTGCAACT
ATGGGACACAGCGGGACAAGAACGCTTTCGAAGTTTGATTCCATGCTATA
TAAGAGAGTCTGACGTCGTTTTAATTGTATATGATATTACGAGCAACCAT
TGGTATAGATTTCTTGGTCAAGACAATACCCATAAACGGGAGAGCGTCGG
CAAGACATCTCTGATCACGAGGTTTATGTATGACCATTTCGAAGGGAATT
ACCAGATGAGTGTCGTCTTCCCAAAGAAATATAAACTCGTTTCTTTGGGT
GAACAATCAGTTATTCGGTAAGATCGCGGCTACTTTGCCGGTACCGAATG
AAGAGGAAGGTCAGCAAAAAGAAGAACATATCACATTGCTTCCATCCAAG
GATCACCAGGATGAATATGAAGGCTATTGTCAAGCTTGTTGAACAAGTGA
GTTGCAATGAAGCAGAAGAAAAAGCGAAAGAGCTTGAAATCCATTTCATC
GAGACGAGCGCAAAGACTGGTTATAATGTCAAAGAGGTCGTGCTTCATTT
GACCACACCCAAAAATGGATCGATGACGTCAAAGAAGAACGAGGTGATGA
CGTCATCATTTTATTGATTGGCAATAAAACAGACCTAGAGGAAAAAAGGT
CCGTTTGCAACTATGGGACACAGCGGGACAAGAACGCTTTCGAAGTTTGA
TTCCATGCTATATAAGAGAGTCTGACGTCGTTTTAATTGTATATGATATT
ACGAGCAACCATTGGTATAGATTTCTTGGTCAAGACAATACCCATAAACG
GGAGAGCGTCGGCAAGACATCTCTGATCACGAGGTTTATGTATGACCATT
TCGAAGGGAATTACCAGATGAGTGTCGTCTTCCCAAAGAAATATAAACTC
GTTTCTTTGGGTGAACAATCAGTTATTCGGTAAGATCGCGGCTACTTTGC
CGGTACCGAATGAAGAGGAAGGTCAGCAAAAAGAAGAACATATCACATTG
CTTCCATCCAAGGATCACCAGGATGAATATGAAGGCTATTGTCAAGCTTG
TTGAACAAGTGAGTTGCAATGAAGCAGAAGAAAAAGCGAAAGAGCTTGAA
ATCCATTTCATCGAGACGAGCGCAAAGACTGGTTATAATGTCAAAGAGGT
CGTGCTTCATTTGACCACACCCAAAAATGGATCGATGACGTCAAAGAAGA
ACGAGGTGATGACGTCATCATTTTATTGATTGGCAATAAAACAGACCTAG
AGGAAAAAAGGTCCGTTTGCAACTATGGGACACAGCGGGACAAGAACGCT
TTCGAAGTTTGATTCCATGCTATATAAGAGAGTCTGACGTCGTTTTAATT
GTATATGATATTACGAGCAACCATTGGTATAGATTTCTTGGTCAAGACAA
TACCCATAAACGGGAGAGCGTCGGCAAGACATCTCTGATCACGAGGTTTA
TGTATGACCATTTCGAAGGGAATTACCAGATGAGTGTCGTCTTCCCAAAG
AAATATAAACTCGTTTCTTTGGGTGAACAATCAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_029370XLOC_029370Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00045957-proteinTCONS_00045957-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00045957-exon-scaffold_104-1575043694:304292..304581TCONS_00045957-exon-scaffold_104-1575043694:304292..304581Clytia hemisphaericaexon
TCONS_00045957-exon-scaffold_104-1575043694:303591..303649TCONS_00045957-exon-scaffold_104-1575043694:303591..303649Clytia hemisphaericaexon
TCONS_00045957-exon-scaffold_104-1575043694:303283..303336TCONS_00045957-exon-scaffold_104-1575043694:303283..303336Clytia hemisphaericaexon
TCONS_00045957-exon-scaffold_104-1575043694:302036..302141TCONS_00045957-exon-scaffold_104-1575043694:302036..302141Clytia hemisphaericaexon
TCONS_00045957-exon-scaffold_104-1575043694:301362..301473TCONS_00045957-exon-scaffold_104-1575043694:301362..301473Clytia hemisphaericaexon
TCONS_00045957-exon-scaffold_104-1575043694:300162..300255TCONS_00045957-exon-scaffold_104-1575043694:300162..300255Clytia hemisphaericaexon
TCONS_00045957-exon-scaffold_104-1575043694:298386..299673TCONS_00045957-exon-scaffold_104-1575043694:298386..299673Clytia hemisphaericaexon
TCONS_00045957-exon-scaffold_104-1510915933:304292..304581TCONS_00045957-exon-scaffold_104-1510915933:304292..304581Clytia hemisphaericaexon
TCONS_00045957-exon-scaffold_104-1510915933:303591..303649TCONS_00045957-exon-scaffold_104-1510915933:303591..303649Clytia hemisphaericaexon
TCONS_00045957-exon-scaffold_104-1510915933:303283..303336TCONS_00045957-exon-scaffold_104-1510915933:303283..303336Clytia hemisphaericaexon
TCONS_00045957-exon-scaffold_104-1510915933:302036..302141TCONS_00045957-exon-scaffold_104-1510915933:302036..302141Clytia hemisphaericaexon
TCONS_00045957-exon-scaffold_104-1510915933:301362..301473TCONS_00045957-exon-scaffold_104-1510915933:301362..301473Clytia hemisphaericaexon
TCONS_00045957-exon-scaffold_104-1510915933:300162..300255TCONS_00045957-exon-scaffold_104-1510915933:300162..300255Clytia hemisphaericaexon
TCONS_00045957-exon-scaffold_104-1510915933:298386..299673TCONS_00045957-exon-scaffold_104-1510915933:298386..299673Clytia hemisphaericaexon
TCONS_00045957-exon-scaffold_104-1491911889:304292..304581TCONS_00045957-exon-scaffold_104-1491911889:304292..304581Clytia hemisphaericaexon
TCONS_00045957-exon-scaffold_104-1491911889:303591..303649TCONS_00045957-exon-scaffold_104-1491911889:303591..303649Clytia hemisphaericaexon
TCONS_00045957-exon-scaffold_104-1491911889:303283..303336TCONS_00045957-exon-scaffold_104-1491911889:303283..303336Clytia hemisphaericaexon
TCONS_00045957-exon-scaffold_104-1491911889:302036..302141TCONS_00045957-exon-scaffold_104-1491911889:302036..302141Clytia hemisphaericaexon
TCONS_00045957-exon-scaffold_104-1491911889:301362..301473TCONS_00045957-exon-scaffold_104-1491911889:301362..301473Clytia hemisphaericaexon
TCONS_00045957-exon-scaffold_104-1491911889:300162..300255TCONS_00045957-exon-scaffold_104-1491911889:300162..300255Clytia hemisphaericaexon
TCONS_00045957-exon-scaffold_104-1491911889:298386..299673TCONS_00045957-exon-scaffold_104-1491911889:298386..299673Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_104supercontigscaffold_104:298386..304581 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.68031	3.11725	3.21714	3.1693	10.8107	6.5834	28.0824	30.9607	23.0677	25.095	15.6376	13.5471	12.0349	10.8607	9.01017	10.1309	14.6748	13.7974	7.0614	12.6408	9.41593	8.75868	5.4013	7.17767	9.24974	9.03523	9.53274	4.65264	3.16037	2.13662
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR005225Small_GTP-bd_dom
IPR001806Small_GTPase
IPR027417P-loop_NTPase
Vocabulary: Molecular Function
TermDefinition
GO:0005525GTP binding
GO:0003924GTPase activity
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003924 GTPase activity
molecular_function GO:0005525 GTP binding
Blast
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BLAST of TCONS_00045957 vs. Swiss-Prot (Human)
Match: RAB6A (Ras-related protein Rab-6A OS=Homo sapiens GN=RAB6A PE=1 SV=3)

HSP 1 Score: 252.677 bits (644), Expect = 1.027e-78
Identity = 125/195 (64.10%), Postives = 147/195 (75.38%), Query Frame = 2 
Query:  254 KKYKLVSLGEQSVGKTSLITRFMYDHFEGNYQATIGIDFLVKTIPINGRAVRLQLWDTAGQERFRSLIPCYIRESDVVLIVYDITSRASFDHTQKWIDDVKEERGDDVIILLIGNKTDLEEKRQVSCNEAEEKAKELEIHFIETSAKTGYNVKELFGKIAATLPVPNEEEGQQKEEHITL-LPSKDHQDEYEGYC 835
            +K+KLV LGEQSVGKTSLITRFMYD F+  YQATIGIDFL KT+ +  R VRLQLWDTAGQERFRSLIP YIR+S V ++VYDIT+  SF  T KWIDDV+ ERG DVII+L+GNKTDL +KRQVS  E E KAKEL + FIETSAK GYNVK+LF ++AA LP     + + +E+ I + L     Q   EG C
Sbjct:   12 RKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMESTQDRSREDMIDIKLEKPQEQPVSEGGC 206
The following BLAST results are available for this feature:
BLAST of TCONS_00045957 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RAB6A1.027e-7864.10Ras-related protein Rab-6A OS=Homo sapiens GN=RAB6... [more]
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