TCONS_00045957-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00045957-protein
Unique NameTCONS_00045957-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length203

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00045957-protein ID=TCONS_00045957-protein|Name=TCONS_00045957-protein|organism=Clytia hemisphaerica|type=polypeptide|length=203bp
MSVVFPKKYKLVSLGEQSVGKTSLITRFMYDHFEGNYQATIGIDFLVKTI
PINGRAVRLQLWDTAGQERFRSLIPCYIRESDVVLIVYDITSRASFDHTQ
KWIDDVKEERGDDVIILLIGNKTDLEEKRQVSCNEAEEKAKELEIHFIET
SAKTGYNVKELFGKIAATLPVPNEEEGQQKEEHITLLPSKDHQDEYEGYC
QAC
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_029370XLOC_029370Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00045957TCONS_00045957Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR005225Small_GTP-bd_dom
IPR001806Small_GTPase
IPR027417P-loop_NTPase
Vocabulary: Molecular Function
TermDefinition
GO:0005525GTP binding
GO:0003924GTPase activity
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003924 GTPase activity
molecular_function GO:0005525 GTP binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 133..153
NoneNo IPR availablePRINTSPR00449RASTRNSFRMNGcoord: 50..72
score: 49.72
coord: 147..169
score: 41.17
coord: 32..48
score: 33.65
coord: 112..125
score: 49.93
coord: 9..30
score: 41.66
NoneNo IPR availableSMARTSM00175rab_sub_5coord: 9..172
e-value: 2.4E-79
score: 279.6
NoneNo IPR availableSMARTSM00173ras_sub_4coord: 6..172
e-value: 6.0E-37
score: 138.7
NoneNo IPR availableSMARTSM00176ran_sub_2coord: 14..195
e-value: 3.6E-5
score: 24.2
NoneNo IPR availableSMARTSM00174rho_sub_3coord: 11..174
e-value: 5.2E-13
score: 46.6
NoneNo IPR availableGENE3D3.40.50.300coord: 73..169
e-value: 2.0E-37
score: 126.8
NoneNo IPR availableGENE3D3.30.70.1390coord: 7..72
e-value: 8.4E-27
score: 92.5
NoneNo IPR availablePROSITEPS51419RABcoord: 1..203
score: 31.813
NoneNo IPR availableCDDcd01861Rab6coord: 9..169
e-value: 6.97076E-94
score: 272.959
IPR005225Small GTP-binding protein domainTIGRFAMTIGR00231TIGR00231coord: 7..165
e-value: 1.7E-30
score: 103.9
IPR001806Small GTPase superfamilyPFAMPF00071Rascoord: 10..168
e-value: 3.7E-59
score: 198.8
IPR027417P-loop containing nucleoside triphosphate hydrolaseSUPERFAMILY52540P-loop containing nucleoside triphosphate hydrolasescoord: 7..176

Blast
[Close]
BLAST of TCONS_00045957-protein vs. Swiss-Prot (Human)
Match: RAB6A (Ras-related protein Rab-6A OS=Homo sapiens GN=RAB6A PE=1 SV=3)

HSP 1 Score: 253.062 bits (645), Expect = 3.194e-86
Identity = 125/195 (64.10%), Postives = 147/195 (75.38%), Query Frame = 0 
Query:    7 KKYKLVSLGEQSVGKTSLITRFMYDHFEGNYQATIGIDFLVKTIPINGRAVRLQLWDTAGQERFRSLIPCYIRESDVVLIVYDITSRASFDHTQKWIDDVKEERGDDVIILLIGNKTDLEEKRQVSCNEAEEKAKELEIHFIETSAKTGYNVKELFGKIAATLPVPNEEEGQQKEEHITL-LPSKDHQDEYEGYC 200
            +K+KLV LGEQSVGKTSLITRFMYD F+  YQATIGIDFL KT+ +  R VRLQLWDTAGQERFRSLIP YIR+S V ++VYDIT+  SF  T KWIDDV+ ERG DVII+L+GNKTDL +KRQVS  E E KAKEL + FIETSAK GYNVK+LF ++AA LP     + + +E+ I + L     Q   EG C
Sbjct:   12 RKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMESTQDRSREDMIDIKLEKPQEQPVSEGGC 206
The following BLAST results are available for this feature:
BLAST of TCONS_00045957-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RAB6A3.194e-8664.10Ras-related protein Rab-6A OS=Homo sapiens GN=RAB6... [more]
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