TCONS_00045894 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00045894
Unique Name	TCONS_00045894
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	1088

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at scaffold_102:325830..330476-

transcript sequence

>TCONS_00045894 ID=TCONS_00045894|Name=TCONS_00045894|organism=Clytia hemisphaerica|type=transcript|length=1088bp
TATAGTCTCAGCCTTATTAGTATaagagtttttaaacagctttatgTAAT
TACATATTCTCAAATATTCGATTAGAAATCCCCCTGATGTGTTTTATCTC
ACACGTGTTTACACAAGCAGTCTGGGTACTAGCTACTTAACACGTTATAT
ATACAGAGGATTNTTTACACAAGCAGTCTGGGTACTAGCTACTTAACACG
TTATAAATACAGAGGATTTGCAAGACAGACATTCACATTGTTGTTGGTAT
TTGTCGTCGTAGCATCTCATATTTTCGCAGAGCTCTTTATTCATCATGAA
TAAGTTTATAATCATCGCTTTGGTTGGTTTGGCCTGTTTGGCTTTGTCAG
AGGCTAGCAAATGTAGTCCAGTTATGTGCAAAATGTTTTGCAAAAATGGA
TTCCAAAGAGATGCAAATGGTTGTGAAGTCTGCAAATGCAATCAATGTCC
ACAACAGCAATGCCGTATGTTCTGCAAGAACGGGTTCAAAAAAGATGTCA
ATGGATGTGAGATCTGCAAATGCAACGAATGTCCAATGCAAAGGTGTCGT
ATGAGATGTGAATATGGCTTCAAGAAGGATGAAGAAGGCTGTGAAATCTG
TGAATGCAATGAATGCCCACAAAGACAATGCAGAATGCGATGCCCAAATG
GATTTGAGCAAGACAAAAATGGCTGCCAAATCTGCCAATGCAAAGAAGTC
GCCCCAATGATGGACGAAAAATGTCCAGAAAGACAATGCCGTATGTTCTG
CAAGAACGGATTCCAAAAGAACGCCAACGGATGTGAAATCTGCAAATGTA
ACAAATGCCCACAAAGACAATGCAGAATGCGATGCCCAAATGGATTTGAA
CAAGACAAAAATGGTTGCCAAATCTGTCAATGCAAAgAAGTTGCTCCAAT
GATGGACGAAAAATGCCCAGAAAGACAATGCCGTATGTTCTGCAAGAACG
GATTCCAAAAGAACGCCAACGGATGTGAAATCTGCAAGTGCAATGAATGC
CCACAAAGACAATGCAGAATGCGATGTCCAAATGGATTTGAACAAGACAA
AAATGGTTGCCAAATCTGCCAATGCAAAGGTTAGAAAA

Run BLAST on NCBI

transcript from alignment at scaffold_102:325830..330476-

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00045894 ID=TCONS_00045894|Name=TCONS_00045894|organism=Clytia hemisphaerica|type=transcript|length=4647bp|location=Sequence derived from alignment at scaffold_102:325830..330476- (Clytia hemisphaerica)
TATAGTCTCAGCCTTATTAGTATAAGAGTTTTTAAACAGCTTTATGTAAT
TACATATTCTCAAATATTCGATTAGAAATCCCCCTGATGTGTTTTATCTC
ACACGTGTTTACACAAGCAGTCTGGGTACTAGCTACTTAACACGTTATAT
ATACAGAGGATTNTTTACACAAGCAGTCTGGGTACTAGCTACTTAACACG
TTATAAATACAGAGGATTTGCAAGACAGACATTCACATTGTTGTTGGTAT
TTGTCGTCGTAGCATCTCATATTTTCGCAGAGCTCTTTATTCATCATGAA
TAAGTTTATAATCATCGCTTTGGTAAGTTGACTTTGAATATGGCATAGGG
GATAGAGGATATAACATTTTTTGGAAATTTACCCCGCGGACAAGCATTCC
TAGACATTAGCCTCAAACAGAGCAAAATTACCCCAAACAGAGCAAGTTCA
CCCACCGCAAGTGAACTTTCAAAATCTGCAGCAAGTTTGATGAAATATTT
GAGATAAAAATCTCATTTGCTCAAAAGTGGGGAGGCTCAAGTCTCTCCAG
TCTCCCCGCTTCCTTCCACCGGGCCTGAGAATGATCTAAAATTGGATCTT
CATTTTTTTTTAGAGTTTTATCCTTTCATTAAATGCAACTTTTCTTTTTA
TAATCAGGTTGGTTTGGCCTGTTTGGCTTTGTCAGAGGCTAGCAGTAAGT
AGAATTGAAAATTTGATTTCATGTCGCTTACAAACACCCCTTTAGTGTAG
TGGCTTGGCTTGAAAAAATTCATTTTTTCATTTTTTATATTTTCATCTTA
ATTGCCATCATAAAATACAACTTTGGGCCAAATATATTTTGAATTTCCGG
TTATGACATCATCACTAAAATGGCCTAAAAAAGAGTATTCCACCGATGAA
AATTTAGGGGAATTTTTTTATGTGGTTAAAGGATACTATAAGGAGGTGCA
AAATTTTAAGCCGGGTTATTTTGAATTTCCTACAAAGAGTGCTTTTTTAG
CTGGCACGACCATACTACCTTTATGAGTGACCAAAAGAATTTTGATTCCC
CAGGTTGTCTATGCATGAAAGGTTAGGATGTGTGCCGCCCTTAAAAATAC
CTTTTTGGACCTGGAAGTCGTTGCAAGGATTGAAAGTTTCAAGTTTTTAA
TTTTTGAAAGATTGAAATTTTGTTAAATTAGTCCCAACAACAGTCGTAAA
AATTCACAAAATTTTGCAACATTATTTTTCATAAAAACACGCTATACATT
ATTTTTCAGAATGTAGTCCAGTTATGTGCAAAATGTTTTGCAAAAATGGA
TTCCAAAGAGATGCAAATGGTTGTGAAGTCTGCAAATGCAATCGTAAGAT
CATTGATTTCAAACTCCGAATAGGCAAGACCCGAGACTCTTGGATGGGAA
ATGAATCCACTTATTTCTCATCCAAAATGCGTGACCCCGTGATTTTTACA
TAAACGCCAGAAAAGTTTTCACGCACCTGCCCACGTGAGTACGTTCGAAA
AGGTTTATTGAGGGGCATTACGCTAAGGTTTGTAACAACATCTGCATGGA
TACGAGCGCTTACTAAACTTGCCTTTATTTATAGAATGTCCACAACAGCA
ATGCCGTATGTTCTGCAAGAACGGGTTCAAAAAAGATGTCAATGGATGTG
AGATCTGCAAATGCAACGGTAAGGGAATAACTATTTAGAATTGATATTTA
TTTAATGGATGCACATCCTGTTTTATGGGAAATACGAACTTTAATATACC
TGAGCTTTGATTGGATTTAATTTCGCGAGCCAAAAAATCACGAAATTTTC
TGGATTTATTTTGACGAATTGGCGTTTTCAAATATTTCACGTTGTATTTT
TGTAAAAACGCAAATAATTTTATCTGATTTAAAGTATGTCTCAGTAAAAG
ATTTCAGCCTATGCTGAACTAAATGTCATCACTGTAATACTTATGTAAAC
AGCGTTAGTGCGTTGATTCGGTAAGCGGCAAATTGTCATCTTCTTCTCAT
TCTTCGTTCTAGAATGTCCAATGCAAAGGTGTCGTATGAGATGTGAATAT
GGCTTCAAGAAGGATGAAGAAGGCTGTGAAATCTGTGAATGCAATGGTAC
TAAAAAGATCGATTTTTTAACAATTGTACCTAACTTCTGTATTTCTGCAT
ATGATTTTTATGTGATCTTAATAGTTCCAGGGAGGGGAGAGAAAAAAAAT
ATTTTGGGTTCCAAATGTCCTCTTATGCAGTTTTACAGCGTAGGAAAAAT
TGAATTTATAATGTTTTTAAGGGAGGTATCTTATTCTTAAGTAACTGGTG
GAATGGTCGGTGGTGACTAACATATCCCTTCAACAATATTGCAAATAAAG
GAAAGGATTCACAGTTCATGTCCTAAATATCAATTTCTTTTTGTATTTCA
CAGAATGCCCACAAAGACAATGCAGAATGCGATGCCCAAATGGATTTGAG
CAAGACAAAAATGGCTGCCAAATCTGCCAATGCAAAGGTCAGAAAATAAG
CCCTTCAGTGTTAAAAATATTTCATAAACAAATTCAAAACTTTGCAAAAT
CAAAAGATTTCTGAATTCAAGATAACTGTTTTTCTCCAATTTTATTTCAG
AAGTCGCCCCAATGATGGACGAAAAATGTCCAGAAAGACAATGCCGTATG
TTCTGCAAGAACGGATTCCAAAAGAACGCCAACGGATGTGAAATCTGCAA
ATGTAACAGTATGCAACTATATCAATTATTTTAGTTTAATATTTGTTAGA
TTTGTGAAACTTGTAAGCCATTGGCACTCTCTAACACTCTGCTACTTCAT
TCAATTCAAATGATCTTCAAAACTTAAATAATGCAAATCTGACACTTTTT
ACCGAAAGAAAATCACTTTTCACTAAAACTAAATTTTTCATCCTGACAGA
ATGCCCACAAAGACAATGCAGAATGCGATGCCCAAATGGATTTGAACAAG
ACAAAAATGGTTGCCAAATCTGTCAATGCAAAGGTTAGAAAAAAGTTTTT
AAAAAATATTGTTCAATTTCTATGAGAAAAGCGTTCACAGTATTTTTTCA
GGTTATCTAACGGTAAGAAAGCAACCCAAATTTGATTTAGGTCCCATAAT
CTGACTTATGTTTTATATTACATAAACAGGCAACCGAACTCTCAATTATA
TTTTAGAAGTTGCTCCAATGATGGACGAAAAATGCCCAGAAAGACAATGC
CGTATGTTCTGCAAGAACGGATTCCAAAAGAACGCCAACGGATGTGAAAT
CTGCAAGTGCAATGGTATACAACTATTAAACACGCCTAATTCCAGATAGC
AATAGTATTTTGGAGAGAGGCTGAATGACATAATTCAAAGTCAGGGGAGA
ATTTCCACGCCTGACAAATAATACTTGATACAGCTCAAAGCTTCAAACAA
TTTTGAATTTTGAATTACCATCTAGCCTAAACTAGCTGTTTGTAAACCCG
GGGTCTTCGAAACACAAAAATGAAAAGTGAGAAAAAGTTGACACCCTGGG
TATTCAGTGTACTGTTTCTATATCATTTAATTTATCCATGTCAGTGTACC
AACCCCTTTCCACAGACCCATTGGGATCCCTTCCCACTGAAGGGAAAGTC
CAAAAAGTCGTCCCGGTGAAAATTATTCTCCAATTTTTATCCCCACTGAA
AATAATCAATTAAACCAATCCTCACTGCAAAATGTTATGCTATTTTTTCC
ATCCCCACTGAAATTTCTGACTTGAAAACAAAAGAATTGAAAGCCCAAGT
CATAAAAAATACGGGAATATCAATCCCAATCGAGTTTCAATCTGTTATTT
TTATCCCCACTGGCTGAAAAAATCCTACCGGGTCTGTGAGCAGGGGGTGT
AGTGTACTGTTTCTAAGAGGCTATTATTATCAGTGCTTGGGCAATGTTAA
TATATCTATATTGCATGTNGGAGGTGTAGTGTACTGTTTCTAAGAGGCTA
TTACTATCAGTGCTTGGGCAATGTTTTAATATATCTATATTGCATGTTTT
TAGAATGTCCACAACAACAATGTCGTATGTTCTGCAAAAATGGATTCCAA
AAGAACGCCAACGGCTGTGAGATCTGCAAATGCAACGGTAAGGGAACTGT
TTAGTTGATTCAACTTGCCTGTATCACTAACCAAATAAAAGGGAGTAATC
GAAAGTGCTAAATCAGGAATAATGGAATATATCTTGCATGTTGTCCAAGA
ATAGGACAATCCTAATGCTGAAAGCTCAGGCGACTCTTATATGAAAGCTT
AATCTAAATACTGTAGGACAGTTAAACTTTCTCGTTCCCAGGGAAGTTTT
CCTATAGCCACTATAGCGGAAAAAGGCCAACACGCGGGGAATGTAAAAGT
GATTTAAATTTGTTAGGTGTTGTGTATTATCTACGTGTTTGTACGCAGCA
AAAAAGCAGGTATACCCTTAAAAACACCGGAAAGATCTTGGAAATGCCAC
CAAAAATGTTTCCTCTGGATTGGAGAGAGTTTAGCTGTCCTACGGTACCT
TGGGAGGTGTAACTTGTTCTCTGCAACAAAATTACTTATAAATATTCTCT
ACAGAATGCCCACAAAGACAATGCAGAATGCGATGTCCAAATGGATTTGA
ACAAGACAAAAATGGTTGCCAAATCTGCCAATGCAAAGGTTAGAAAA

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_029321	XLOC_029321	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_102	supercontig	scaffold_102:325830..330476 -

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.100315	0	0	0	0	0	0.330569	0.236949	0.199484	0.291422	0.703702	59.062	80.2189	94.2384	236.627	53.914	51.4086	263.356	273.838	602.111	595.25	70.7561	109.329	0	0	0	0.295746	3.30864	3.1148

Blast

[Close]

BLAST of TCONS_00045894 vs. Swiss-Prot (Human)
Match: CRIM1 (Cysteine-rich motor neuron 1 protein OS=Homo sapiens GN=CRIM1 PE=1 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 3.249e-17
Identity = 47/116 (40.52%), Postives = 68/116 (58.62%), Query Frame = 2

Query:  749 CKNGFQKNANGCEICKC----NKCPQRQ--CRMRCPNGFEQDKNGCQICQCKEVAPMMDEKCPERQCRMFCKNGFQKNANGCEICKCNECPQRQCRMRCPNGFEQDKNGCQICQCK 1078
            C NGF+++ NGC  C+C      C +R+  C + CP GF  D   C+IC+C+       +KC    C  +C  G  KN +GC+IC+C +CP+  C   CP GF+QD +GC IC+C+
Sbjct:  482 CINGFKRDHNGCRTCQCINTEELCSERKQGCTLNCPFGFLTDAQNCEICECRP----RPKKCRPIICDKYCPLGLLKNKHGCDICRCKKCPELSCSKICPLGFQQDSHGCLICKCR 593

HSP 2 Score: 80.8777 bits (198), Expect = 1.630e-16
Identity = 51/141 (36.17%), Postives = 71/141 (50.35%), Query Frame = 2

Query:  473 CKNGFKKDVNGCEICKCNECPMQRCRMRCEYGFKKDXXXXXXXXXXXXPQRQCRMRCPNGFEQDKNGCQICQCKEVAPMMDEKCPERQCRMFCKNGFQKNANGCEICKCNKCPQRQCRMRCPNGFEQDKNGCQICQCKEVA 895
            C NGFK+D NGC  C+C     + C  R                     ++ C + CP GF  D   C+IC+C+       +KC    C  +C  G  KN +GC+IC+C KCP+  C   CP GF+QD +GC IC+C+E +
Sbjct:  482 CINGFKRDHNGCRTCQCINT-EELCSER---------------------KQGCTLNCPFGFLTDAQNCEICECRP----RPKKCRPIICDKYCPLGLLKNKHGCDICRCKKCPELSCSKICPLGFQQDSHGCLICKCREAS 596

The following BLAST results are available for this feature:

BLAST of TCONS_00045894 vs. Swiss-Prot (Human)

BLAST of TCONS_00045894 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
CRIM1	3.249e-17	40.52	Cysteine-rich motor neuron 1 protein OS=Homo sapie...	[more]

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TCONS_00045894 (transcript) - C. hemisphaerica