TCONS_00045893 (transcript) - C. hemisphaerica

Overview
NameTCONS_00045893
Unique NameTCONS_00045893
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length812

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00045893 ID=TCONS_00045893|Name=TCONS_00045893|organism=Clytia hemisphaerica|type=transcript|length=812bp
TATAGTCTCAGCCTTATTAGTATaagagtttttaaacagctttatgTAAT
TACATATTCTCAAATATTCGATTAGAAATCCCCCTGATGTGTTTTATCTC
ACACGTGTTTACACAAGCAGTCTGGGTACTAGCTACTTAACACGTTATAT
ATACAGAGGATTNTTTACACAAGCAGTCTGGGTACTAGCTACTTAACACG
TTATAAATACAGAGGATTTGCAAGACAGACATTCACATTGTTGTTGGTAT
TTGTCGTCGTAGCATCTCATATTTTCGCAGAGCTCTTTATTCATCATGAA
TAAGTTTATAATCATCGCTTTGGTTGGTTTGGCCTGTTTGGCTTTGTCAG
AGGCTAGCAAATGTAGTCCAGTTATGTGCAAAATGTTTTGCAAAAATGGA
TTCCAAAGAGATGCAAATGGTTGTGAAGTCTGCAAATGCAATCAATGTCC
ACAACAGCAATGCCGTATGTTCTGCAAGAACGGGTTCAAAAAAGATGTCA
ATGGATGTGAGATCTGCAAATGCAACGAATGCCCACAAAGACAATGCAGA
ATGCGATGCCCAAATGGATTTGAACAAGACAAAAATGGTTGCCAAATCTG
TCAATGCAAAgAAGTTGCTCCAATGATGGACGAAAAATGCCCAGAAAGAC
AATGCCGTATGTTCTGCAAGAACGGATTCCAAAAGAACGCCAACGGATGT
GAAATCTGCAAGTGCAATGAATGCCCACAAAGACAATGCAGAATGCGATG
TCCAAATGGATTTGAACAAGACAAAAATGGTTGCCAAATCTGCCAATGCA
AAGGTTAGAAAA
Run BLAST on NCBI

transcript from alignment at scaffold_102:325830..330476-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00045893 ID=TCONS_00045893|Name=TCONS_00045893|organism=Clytia hemisphaerica|type=transcript|length=4647bp|location=Sequence derived from alignment at scaffold_102:325830..330476- (Clytia hemisphaerica)
TATAGTCTCAGCCTTATTAGTATAAGAGTTTTTAAACAGCTTTATGTAAT
TACATATTCTCAAATATTCGATTAGAAATCCCCCTGATGTGTTTTATCTC
ACACGTGTTTACACAAGCAGTCTGGGTACTAGCTACTTAACACGTTATAT
ATACAGAGGATTNTTTACACAAGCAGTCTGGGTACTAGCTACTTAACACG
TTATAAATACAGAGGATTTGCAAGACAGACATTCACATTGTTGTTGGTAT
TTGTCGTCGTAGCATCTCATATTTTCGCAGAGCTCTTTATTCATCATGAA
TAAGTTTATAATCATCGCTTTGGTAAGTTGACTTTGAATATGGCATAGGG
GATAGAGGATATAACATTTTTTGGAAATTTACCCCGCGGACAAGCATTCC
TAGACATTAGCCTCAAACAGAGCAAAATTACCCCAAACAGAGCAAGTTCA
CCCACCGCAAGTGAACTTTCAAAATCTGCAGCAAGTTTGATGAAATATTT
GAGATAAAAATCTCATTTGCTCAAAAGTGGGGAGGCTCAAGTCTCTCCAG
TCTCCCCGCTTCCTTCCACCGGGCCTGAGAATGATCTAAAATTGGATCTT
CATTTTTTTTTAGAGTTTTATCCTTTCATTAAATGCAACTTTTCTTTTTA
TAATCAGGTTGGTTTGGCCTGTTTGGCTTTGTCAGAGGCTAGCAGTAAGT
AGAATTGAAAATTTGATTTCATGTCGCTTACAAACACCCCTTTAGTGTAG
TGGCTTGGCTTGAAAAAATTCATTTTTTCATTTTTTATATTTTCATCTTA
ATTGCCATCATAAAATACAACTTTGGGCCAAATATATTTTGAATTTCCGG
TTATGACATCATCACTAAAATGGCCTAAAAAAGAGTATTCCACCGATGAA
AATTTAGGGGAATTTTTTTATGTGGTTAAAGGATACTATAAGGAGGTGCA
AAATTTTAAGCCGGGTTATTTTGAATTTCCTACAAAGAGTGCTTTTTTAG
CTGGCACGACCATACTACCTTTATGAGTGACCAAAAGAATTTTGATTCCC
CAGGTTGTCTATGCATGAAAGGTTAGGATGTGTGCCGCCCTTAAAAATAC
CTTTTTGGACCTGGAAGTCGTTGCAAGGATTGAAAGTTTCAAGTTTTTAA
TTTTTGAAAGATTGAAATTTTGTTAAATTAGTCCCAACAACAGTCGTAAA
AATTCACAAAATTTTGCAACATTATTTTTCATAAAAACACGCTATACATT
ATTTTTCAGAATGTAGTCCAGTTATGTGCAAAATGTTTTGCAAAAATGGA
TTCCAAAGAGATGCAAATGGTTGTGAAGTCTGCAAATGCAATCGTAAGAT
CATTGATTTCAAACTCCGAATAGGCAAGACCCGAGACTCTTGGATGGGAA
ATGAATCCACTTATTTCTCATCCAAAATGCGTGACCCCGTGATTTTTACA
TAAACGCCAGAAAAGTTTTCACGCACCTGCCCACGTGAGTACGTTCGAAA
AGGTTTATTGAGGGGCATTACGCTAAGGTTTGTAACAACATCTGCATGGA
TACGAGCGCTTACTAAACTTGCCTTTATTTATAGAATGTCCACAACAGCA
ATGCCGTATGTTCTGCAAGAACGGGTTCAAAAAAGATGTCAATGGATGTG
AGATCTGCAAATGCAACGGTAAGGGAATAACTATTTAGAATTGATATTTA
TTTAATGGATGCACATCCTGTTTTATGGGAAATACGAACTTTAATATACC
TGAGCTTTGATTGGATTTAATTTCGCGAGCCAAAAAATCACGAAATTTTC
TGGATTTATTTTGACGAATTGGCGTTTTCAAATATTTCACGTTGTATTTT
TGTAAAAACGCAAATAATTTTATCTGATTTAAAGTATGTCTCAGTAAAAG
ATTTCAGCCTATGCTGAACTAAATGTCATCACTGTAATACTTATGTAAAC
AGCGTTAGTGCGTTGATTCGGTAAGCGGCAAATTGTCATCTTCTTCTCAT
TCTTCGTTCTAGAATGTCCAATGCAAAGGTGTCGTATGAGATGTGAATAT
GGCTTCAAGAAGGATGAAGAAGGCTGTGAAATCTGTGAATGCAATGGTAC
TAAAAAGATCGATTTTTTAACAATTGTACCTAACTTCTGTATTTCTGCAT
ATGATTTTTATGTGATCTTAATAGTTCCAGGGAGGGGAGAGAAAAAAAAT
ATTTTGGGTTCCAAATGTCCTCTTATGCAGTTTTACAGCGTAGGAAAAAT
TGAATTTATAATGTTTTTAAGGGAGGTATCTTATTCTTAAGTAACTGGTG
GAATGGTCGGTGGTGACTAACATATCCCTTCAACAATATTGCAAATAAAG
GAAAGGATTCACAGTTCATGTCCTAAATATCAATTTCTTTTTGTATTTCA
CAGAATGCCCACAAAGACAATGCAGAATGCGATGCCCAAATGGATTTGAG
CAAGACAAAAATGGCTGCCAAATCTGCCAATGCAAAGGTCAGAAAATAAG
CCCTTCAGTGTTAAAAATATTTCATAAACAAATTCAAAACTTTGCAAAAT
CAAAAGATTTCTGAATTCAAGATAACTGTTTTTCTCCAATTTTATTTCAG
AAGTCGCCCCAATGATGGACGAAAAATGTCCAGAAAGACAATGCCGTATG
TTCTGCAAGAACGGATTCCAAAAGAACGCCAACGGATGTGAAATCTGCAA
ATGTAACAGTATGCAACTATATCAATTATTTTAGTTTAATATTTGTTAGA
TTTGTGAAACTTGTAAGCCATTGGCACTCTCTAACACTCTGCTACTTCAT
TCAATTCAAATGATCTTCAAAACTTAAATAATGCAAATCTGACACTTTTT
ACCGAAAGAAAATCACTTTTCACTAAAACTAAATTTTTCATCCTGACAGA
ATGCCCACAAAGACAATGCAGAATGCGATGCCCAAATGGATTTGAACAAG
ACAAAAATGGTTGCCAAATCTGTCAATGCAAAGGTTAGAAAAAAGTTTTT
AAAAAATATTGTTCAATTTCTATGAGAAAAGCGTTCACAGTATTTTTTCA
GGTTATCTAACGGTAAGAAAGCAACCCAAATTTGATTTAGGTCCCATAAT
CTGACTTATGTTTTATATTACATAAACAGGCAACCGAACTCTCAATTATA
TTTTAGAAGTTGCTCCAATGATGGACGAAAAATGCCCAGAAAGACAATGC
CGTATGTTCTGCAAGAACGGATTCCAAAAGAACGCCAACGGATGTGAAAT
CTGCAAGTGCAATGGTATACAACTATTAAACACGCCTAATTCCAGATAGC
AATAGTATTTTGGAGAGAGGCTGAATGACATAATTCAAAGTCAGGGGAGA
ATTTCCACGCCTGACAAATAATACTTGATACAGCTCAAAGCTTCAAACAA
TTTTGAATTTTGAATTACCATCTAGCCTAAACTAGCTGTTTGTAAACCCG
GGGTCTTCGAAACACAAAAATGAAAAGTGAGAAAAAGTTGACACCCTGGG
TATTCAGTGTACTGTTTCTATATCATTTAATTTATCCATGTCAGTGTACC
AACCCCTTTCCACAGACCCATTGGGATCCCTTCCCACTGAAGGGAAAGTC
CAAAAAGTCGTCCCGGTGAAAATTATTCTCCAATTTTTATCCCCACTGAA
AATAATCAATTAAACCAATCCTCACTGCAAAATGTTATGCTATTTTTTCC
ATCCCCACTGAAATTTCTGACTTGAAAACAAAAGAATTGAAAGCCCAAGT
CATAAAAAATACGGGAATATCAATCCCAATCGAGTTTCAATCTGTTATTT
TTATCCCCACTGGCTGAAAAAATCCTACCGGGTCTGTGAGCAGGGGGTGT
AGTGTACTGTTTCTAAGAGGCTATTATTATCAGTGCTTGGGCAATGTTAA
TATATCTATATTGCATGTNGGAGGTGTAGTGTACTGTTTCTAAGAGGCTA
TTACTATCAGTGCTTGGGCAATGTTTTAATATATCTATATTGCATGTTTT
TAGAATGTCCACAACAACAATGTCGTATGTTCTGCAAAAATGGATTCCAA
AAGAACGCCAACGGCTGTGAGATCTGCAAATGCAACGGTAAGGGAACTGT
TTAGTTGATTCAACTTGCCTGTATCACTAACCAAATAAAAGGGAGTAATC
GAAAGTGCTAAATCAGGAATAATGGAATATATCTTGCATGTTGTCCAAGA
ATAGGACAATCCTAATGCTGAAAGCTCAGGCGACTCTTATATGAAAGCTT
AATCTAAATACTGTAGGACAGTTAAACTTTCTCGTTCCCAGGGAAGTTTT
CCTATAGCCACTATAGCGGAAAAAGGCCAACACGCGGGGAATGTAAAAGT
GATTTAAATTTGTTAGGTGTTGTGTATTATCTACGTGTTTGTACGCAGCA
AAAAAGCAGGTATACCCTTAAAAACACCGGAAAGATCTTGGAAATGCCAC
CAAAAATGTTTCCTCTGGATTGGAGAGAGTTTAGCTGTCCTACGGTACCT
TGGGAGGTGTAACTTGTTCTCTGCAACAAAATTACTTATAAATATTCTCT
ACAGAATGCCCACAAAGACAATGCAGAATGCGATGTCCAAATGGATTTGA
ACAAGACAAAAATGGTTGCCAAATCTGCCAATGCAAAGGTTAGAAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_029321XLOC_029321Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00045893-exon-scaffold_102-1575043694:330155..330476TCONS_00045893-exon-scaffold_102-1575043694:330155..330476Clytia hemisphaericaexon
TCONS_00045893-exon-scaffold_102-1575043694:329783..329819TCONS_00045893-exon-scaffold_102-1575043694:329783..329819Clytia hemisphaericaexon
TCONS_00045893-exon-scaffold_102-1575043694:329134..329217TCONS_00045893-exon-scaffold_102-1575043694:329134..329217Clytia hemisphaericaexon
TCONS_00045893-exon-scaffold_102-1575043694:328809..328892TCONS_00045893-exon-scaffold_102-1575043694:328809..328892Clytia hemisphaericaexon
TCONS_00045893-exon-scaffold_102-1575043694:327494..327577TCONS_00045893-exon-scaffold_102-1575043694:327494..327577Clytia hemisphaericaexon
TCONS_00045893-exon-scaffold_102-1575043694:327213..327320TCONS_00045893-exon-scaffold_102-1575043694:327213..327320Clytia hemisphaericaexon
TCONS_00045893-exon-scaffold_102-1575043694:325830..325922TCONS_00045893-exon-scaffold_102-1575043694:325830..325922Clytia hemisphaericaexon
TCONS_00045893-exon-scaffold_102-1510915933:330155..330476TCONS_00045893-exon-scaffold_102-1510915933:330155..330476Clytia hemisphaericaexon
TCONS_00045893-exon-scaffold_102-1510915933:329783..329819TCONS_00045893-exon-scaffold_102-1510915933:329783..329819Clytia hemisphaericaexon
TCONS_00045893-exon-scaffold_102-1510915933:329134..329217TCONS_00045893-exon-scaffold_102-1510915933:329134..329217Clytia hemisphaericaexon
TCONS_00045893-exon-scaffold_102-1510915933:328809..328892TCONS_00045893-exon-scaffold_102-1510915933:328809..328892Clytia hemisphaericaexon
TCONS_00045893-exon-scaffold_102-1510915933:327494..327577TCONS_00045893-exon-scaffold_102-1510915933:327494..327577Clytia hemisphaericaexon
TCONS_00045893-exon-scaffold_102-1510915933:327213..327320TCONS_00045893-exon-scaffold_102-1510915933:327213..327320Clytia hemisphaericaexon
TCONS_00045893-exon-scaffold_102-1510915933:325830..325922TCONS_00045893-exon-scaffold_102-1510915933:325830..325922Clytia hemisphaericaexon
TCONS_00045893-exon-scaffold_102-1491911889:330155..330476TCONS_00045893-exon-scaffold_102-1491911889:330155..330476Clytia hemisphaericaexon
TCONS_00045893-exon-scaffold_102-1491911889:329783..329819TCONS_00045893-exon-scaffold_102-1491911889:329783..329819Clytia hemisphaericaexon
TCONS_00045893-exon-scaffold_102-1491911889:329134..329217TCONS_00045893-exon-scaffold_102-1491911889:329134..329217Clytia hemisphaericaexon
TCONS_00045893-exon-scaffold_102-1491911889:328809..328892TCONS_00045893-exon-scaffold_102-1491911889:328809..328892Clytia hemisphaericaexon
TCONS_00045893-exon-scaffold_102-1491911889:327494..327577TCONS_00045893-exon-scaffold_102-1491911889:327494..327577Clytia hemisphaericaexon
TCONS_00045893-exon-scaffold_102-1491911889:327213..327320TCONS_00045893-exon-scaffold_102-1491911889:327213..327320Clytia hemisphaericaexon
TCONS_00045893-exon-scaffold_102-1491911889:325830..325922TCONS_00045893-exon-scaffold_102-1491911889:325830..325922Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_102supercontigscaffold_102:325830..330476 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.00326636	0	0	0	0	0.381487	2.49542e-07	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
Blast
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BLAST of TCONS_00045893 vs. Swiss-Prot (Human)
Match: CRIM1 (Cysteine-rich motor neuron 1 protein OS=Homo sapiens GN=CRIM1 PE=1 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 2.008e-18
Identity = 49/116 (42.24%), Postives = 68/116 (58.62%), Query Frame = 2 
Query:  473 CKNGFKKDVNGCEICKC----NECPQRQ--CRMRCPNGFEQDKNGCQICQCKEVAPMMDEKCPERQCRMFCKNGFQKNANGCEICKCNECPQRQCRMRCPNGFEQDKNGCQICQCK 802
            C NGFK+D NGC  C+C      C +R+  C + CP GF  D   C+IC+C+       +KC    C  +C  G  KN +GC+IC+C +CP+  C   CP GF+QD +GC IC+C+
Sbjct:  482 CINGFKRDHNGCRTCQCINTEELCSERKQGCTLNCPFGFLTDAQNCEICECRP----RPKKCRPIICDKYCPLGLLKNKHGCDICRCKKCPELSCSKICPLGFQQDSHGCLICKCR 593
The following BLAST results are available for this feature:
BLAST of TCONS_00045893 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
CRIM12.008e-1842.24Cysteine-rich motor neuron 1 protein OS=Homo sapie... [more]
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