TCONS_00045809 (transcript) - C. hemisphaerica

Overview
NameTCONS_00045809
Unique NameTCONS_00045809
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1274

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00045809 ID=TCONS_00045809|Name=TCONS_00045809|organism=Clytia hemisphaerica|type=transcript|length=1274bp
TAGTCTAGTACTCAGGCTTCAGTCCATATAAAAGCTCGTGGCAACTTTGA
AAAGTAAATCAGATTATTTGCAGCATTCAACGAAGACTACTACTTGCAAA
TAAACTTAAATAATCTATCGATATATTTTATCTACATCGTGTTGTTGAAG
AATCTCATTTGTCGAACGAAGATTATGGCAACTTCAACCCAACATCACTT
GGAGCCGCTGGATCCATTCTGGCCACCATTCGACCCTACTTTCCGTAACC
AAACTCATCTCCATAAACCTCGACAGCCACCACAAACAACGGATTGTGGA
ACTTGCACCATTCAAAGCAGTTTTGCTCGCATGTCGATCAGCAATTCTCA
AAATCGAAACTCGGCACCAACCGTGATTCCACCGTCGTACTACGTTCCTG
TTTACATTCCGTCCGACTATCAATCGAGTTCGTTCTACTCTACGCCCTCT
TCGTCTCCTCCGCTACATCCGCCCACTCTTCCAACGATTCCACCACCAAA
ATACTTAAACACTCCACCTGTCTCACCACCTCGCATTAACTACAGTAAGA
AACCATTATCTTCGAAAACCGACGACTCGGAACCCGTCATCCTGACACGA
TCGCACGTCAATCCAGACACGGTCTCGGAATCGTACACCTTAGCGACTTT
ATTTCGGAACAAGATTTTTGTTGGTTCGCTCAACCAAACGATCACAGCAG
GAGATTTGGTGGACTTCTTTCAAAAGTTTGGAGTGGTTACCGAAGCCAAA
GTCGTGATGGATGACAAAGGCAGCTCTAGAGGGTAAGCAAAACGTCCATA
AACTTGCGTTTGTATTAAAATCTGTGGTACCTAGAGGCATTGGATGCCTA
TTTATTTCTCTGACTAAATAGTGTAAATATGCGACGTCTGCTTGTGATAG
TCTGGAGTTAGGGCAAATGTCTAAAAAATCTCGAATACGACATCGGCGTG
TCTAGAAAAATANATATAGGTTAGTTTTATGAAAATAGTTCTTGTGAAAT
TTTAGTTAAGTTTCTTTGATAGTGCTTTTTGGGGGACTCgaattttttcc
tcaaatttgaTCACGTATTGTTGTTTTTGGAgggcaattttaaaattttt
aaacgtAAATCGATTCTTTGAGCATGTACTTTAAAAGAGTGTAGTCTAAA
AACGCAAATTGAAGgcattttttatggatttttcttagaattttttagga
aagtttagaaattatgtAATTTTACAAGTCAGGGTGATAATATCTTGACT
ACATTTTGTTCCATTTTTTGTACA
Run BLAST on NCBI

protein sequence of TCONS_00045809-protein

>TCONS_00045809-protein ID=TCONS_00045809-protein|Name=TCONS_00045809-protein|organism=Clytia hemisphaerica|type=polypeptide|length=203bp
MATSTQHHLEPLDPFWPPFDPTFRNQTHLHKPRQPPQTTDCGTCTIQSSF
ARMSISNSQNRNSAPTVIPPSYYVPVYIPSDYQSSSFYSTPSSSPPLHPP
TLPTIPPPKYLNTPPVSPPRINYSKKPLSSKTDDSEPVILTRSHVNPDTV
SESYTLATLFRNKIFVGSLNQTITAGDLVDFFQKFGVVTEAKVVMDDKGS
SRG
Run BLAST on NCBI

transcript from alignment at scaffold_101:36534..38203-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00045809 ID=TCONS_00045809|Name=TCONS_00045809|organism=Clytia hemisphaerica|type=transcript|length=1670bp|location=Sequence derived from alignment at scaffold_101:36534..38203- (Clytia hemisphaerica)
TAGTCTAGTACTCAGGCTTCAGTCCATATAAAAGCTCGTGGCAACTTTGA
AAAGTAAATCAGATTATTTGCAGCATTCAACGAAGACTACTACTTGCAAA
TAAACTTAAATAATCTATCGATATATTTTATCTACATCGTGTTGTTGAAG
AATCTCATTTGTCGAACGAAGATTATGGCAACTTCAACCCAACATCACTT
GGAGCCGCTGGATCCATTCTGGCCACCATTCGACCCTACTTTCCGTAACC
AAACTCATCTCCATAAACCTCGACAGCCACCACAAACAACGGATTGTGGA
ACTTGCACCATTCAAAGCAGTTTTGCTCGCATGTCGATCAGCAATTCTCA
AAATCGAAACTCGGCACCAACCGTGATTCCACCGTCGTACTACGTTCCTG
TTTACATTCCGTCCGACTATCAATCGAGTTCGTTCTACTCTACGCCCTCT
TCGTCTCCTCCGCTACATCCGCCCACTCTTCCAACGATTCCACCACCAAA
ATACTTAAACACTCCACCTGTCTCACCACCTCGCATTAACTACAGTAAGA
AACCATTATCTTCGAAAACCGACGACTCGGAACCCGTCATCCTGACACGA
TCGCACGTCAATCCAGACACGGTCTCGGAATCGTACACCTTAGCGACTTT
ATTTCGGAACAAGATTTTTGTTGGTTCGCTCAACCAAACGGTAAGAGAAG
CTTTTCATTTTTTTGTCAGTTTAGTCTTTTTAAATCTTAGCAAAATTCCA
CTAGGTTACGTGTCTTTTCGGTGGGATTATTTTTTCTGAAACAGCATTAA
TAAATTTGTGTTGACAAGAAAGCCTCGAAAGCCTAAGTGTTTCACTTTGG
AAAGTAATTCAGCTTCAGCCCTACACTTTAGTTTCAAATCAACAGTTTTT
TATTTCGCATGAAATTCAGAAAAAGTAAGTGACTTTCAACAACTCTCCGC
CCTAACTTAATTATTTCATATTTCATATCTTGACATTGTTTTATCACTTT
TTTTCTACAGATCACAGCAGGAGATTTGGTGGACTTCTTTCAAAAGTTTG
GAGTGGTTACCGAAGCCAAAGTCGTGATGGATGACAAAGGCAGCTCTAGA
GGGTAAGCAAAACGTCCTTAAACTTGCGTTTGTATTAAANGCCAAAGTCG
TGATGGATGACAAAGGCAGCTCTAGAGGGTAAGCAAAACGTCCATAAACT
TGCGTTTGTATTAAAATCTGTGGTACCTAGAGGCATTGGATGCCTATTTA
TTTCTCTGACTAAATAGTGTAAATATGCGACGTCTGCTTGTGATAGTCTG
GAGTTAGGGCAAATGTCTAAAAAATCTCGAATACGACATCGGCGTGTCTA
GAAAAATANATATAGGTTAGTTTTATGAAAATAGTTCTTGTGAAATTTTA
GTTAAGTTTCTTTGATAGTGCTTTTTGGGGGACTCGAATTTTTTCCTCAA
ATTTGATCACGTATTGTTGTTTTTGGAGGGCAATTTTAAAATTTTTAAAC
GTAAATCGATTCTTTGAGCATGTACTTTAAAAGAGTGTAGTCTAAAAACG
CAAATTGAAGGCATTTTTTATGGATTTTTCTTAGAATTTTTTAGGAAAGT
TTAGAAATTATGTAATTTTACAAGTCAGGGTGATAATATCTTGACTACAT
TTTGTTCCATTTTTTGTACA

Coding sequence (CDS) from alignment at scaffold_101:36534..38203-

>TCONS_00045809 ID=TCONS_00045809|Name=TCONS_00045809|organism=Clytia hemisphaerica|type=CDS|length=1836bp|location=Sequence derived from alignment at scaffold_101:36534..38203- (Clytia hemisphaerica)
GCAGCTCTAGAGGGTAAATCACAGCAGGAGATTTGGTGGACTTCTTTCAA
AAGTTTGGAGTGGTTACCGAAGCCAAAGTCGTGATGGATGACAAAGATGG
CAACTTCAACCCAACATCACTTGGAGCCGCTGGATCCATTCTGGCCACCA
TTCGACCCTACTTTCCGTAACCAAACTCATCTCCATAAACCTCGACAGCC
ACCACAAACAACGGATTGTGGAACTTGCACCATTCAAAGCAGTTTTGCTC
GCATGTCGATCAGCAATTCTCAAAATCGAAACTCGGCACCAACCGTGATT
CCACCGTCGTACTACGTTCCTGTTTACATTCCGTCCGACTATCAATCGAG
TTCGTTCTACTCTACGCCCTCTTCGTCTCCTCCGCTACATCCGCCCACTC
TTCCAACGATTCCACCACCAAAATACTTAAACACTCCACCTGTCTCACCA
CCTCGCATTAACTACAGTAAGAAACCATTATCTTCGAAAACCGACGACTC
GGAACCCGTCATCCTGACACGATCGCACGTCAATCCAGACACGGTCTCGG
AATCGTACACCTTAGCGACTTTATTTCGGAACAAGATTTTTGTTGGTTCG
CTCAACCAAACGGCAGCTCTAGAGGGTAAATCACAGCAGGAGATTTGGTG
GACTTCTTTCAAAAGTTTGGAGTGGTTACCGAAGCCAAAGTCGTGATGGA
TGACAAAGATGGCAACTTCAACCCAACATCACTTGGAGCCGCTGGATCCA
TTCTGGCCACCATTCGACCCTACTTTCCGTAACCAAACTCATCTCCATAA
ACCTCGACAGCCACCACAAACAACGGATTGTGGAACTTGCACCATTCAAA
GCAGTTTTGCTCGCATGTCGATCAGCAATTCTCAAAATCGAAACTCGGCA
CCAACCGTGATTCCACCGTCGTACTACGTTCCTGTTTACATTCCGTCCGA
CTATCAATCGAGTTCGTTCTACTCTACGCCCTCTTCGTCTCCTCCGCTAC
ATCCGCCCACTCTTCCAACGATTCCACCACCAAAATACTTAAACACTCCA
CCTGTCTCACCACCTCGCATTAACTACAGTAAGAAACCATTATCTTCGAA
AACCGACGACTCGGAACCCGTCATCCTGACACGATCGCACGTCAATCCAG
ACACGGTCTCGGAATCGTACACCTTAGCGACTTTATTTCGGAACAAGATT
TTTGTTGGTTCGCTCAACCAAACGGCAGCTCTAGAGGGTAAATCACAGCA
GGAGATTTGGTGGACTTCTTTCAAAAGTTTGGAGTGGTTACCGAAGCCAA
AGTCGTGATGGATGACAAAGATGGCAACTTCAACCCAACATCACTTGGAG
CCGCTGGATCCATTCTGGCCACCATTCGACCCTACTTTCCGTAACCAAAC
TCATCTCCATAAACCTCGACAGCCACCACAAACAACGGATTGTGGAACTT
GCACCATTCAAAGCAGTTTTGCTCGCATGTCGATCAGCAATTCTCAAAAT
CGAAACTCGGCACCAACCGTGATTCCACCGTCGTACTACGTTCCTGTTTA
CATTCCGTCCGACTATCAATCGAGTTCGTTCTACTCTACGCCCTCTTCGT
CTCCTCCGCTACATCCGCCCACTCTTCCAACGATTCCACCACCAAAATAC
TTAAACACTCCACCTGTCTCACCACCTCGCATTAACTACAGTAAGAAACC
ATTATCTTCGAAAACCGACGACTCGGAACCCGTCATCCTGACACGATCGC
ACGTCAATCCAGACACGGTCTCGGAATCGTACACCTTAGCGACTTTATTT
CGGAACAAGATTTTTGTTGGTTCGCTCAACCAAACG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_029282XLOC_029282Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00045809-proteinTCONS_00045809-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00045809-exon-scaffold_101-1575043694:37514..38203TCONS_00045809-exon-scaffold_101-1575043694:37514..38203Clytia hemisphaericaexon
TCONS_00045809-exon-scaffold_101-1575043694:37115..37193TCONS_00045809-exon-scaffold_101-1575043694:37115..37193Clytia hemisphaericaexon
TCONS_00045809-exon-scaffold_101-1575043694:36534..37038TCONS_00045809-exon-scaffold_101-1575043694:36534..37038Clytia hemisphaericaexon
TCONS_00045809-exon-scaffold_101-1510915933:37514..38203TCONS_00045809-exon-scaffold_101-1510915933:37514..38203Clytia hemisphaericaexon
TCONS_00045809-exon-scaffold_101-1510915933:37115..37193TCONS_00045809-exon-scaffold_101-1510915933:37115..37193Clytia hemisphaericaexon
TCONS_00045809-exon-scaffold_101-1510915933:36534..37038TCONS_00045809-exon-scaffold_101-1510915933:36534..37038Clytia hemisphaericaexon
TCONS_00045809-exon-scaffold_101-1491911889:37514..38203TCONS_00045809-exon-scaffold_101-1491911889:37514..38203Clytia hemisphaericaexon
TCONS_00045809-exon-scaffold_101-1491911889:37115..37193TCONS_00045809-exon-scaffold_101-1491911889:37115..37193Clytia hemisphaericaexon
TCONS_00045809-exon-scaffold_101-1491911889:36534..37038TCONS_00045809-exon-scaffold_101-1491911889:36534..37038Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_101supercontigscaffold_101:36534..38203 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.0739956	0.244716	0.175383	0	0	0	0.1336	0.241215	0.11003	0	0.209441	0.186271	0.252294	0.208075	0.539337	3.62807	4.33196	0	0	4.19756	4.98781	0.0948859	0.104175	108.477	117.077	0.0913559	0	0.147897	0.357049
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000504RRM_dom
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00045809 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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