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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00045769 ID=TCONS_00045769|Name=TCONS_00045769|organism=Clytia hemisphaerica|type=transcript|length=2060bp
CGACCATGTTTCTGTTCCGTATGTTAAAACTGGCAGCAATGTTGTTTTAA
TTAACTTTTCTGCTACACTGTTTCTAAAATAACCTGCTTTGTTCGAAAGT
TTTTGGATTGCTAGTGTAATCCCTCTCGCTTTACTTCCTTTCTTTCTGAT
TGTGTCTTCAAGGTCTCCCTTTTCGTTTATAACTTCTCCTAGGTATTTAT
ATTTTTCGCACCTTTTaatatttccttttttcaccttcAGCTGTATCATC
TTTTTGTTCTTCTTTGTTCCACCGATTGCTTGGTAGTTGCTCTTCTCATT
GTTAAAtgtcattttctttgttttctcaaGTCTATGACAGTTTTTTACCG
CGCTTATTATGTTTTCTTCGTCACCTGTTGCACATATGTCGTCTACGTAA
ACCATAGGTTCAACCTCCGCCTCTTCGTATTTTGAAAATACTCTCTCTGC
TACGTTATTTACTTTATCTGTCGTAATGGAACAAAGGGTTGGTCCCCATA
TCGTTCCTTGTCGAACTATTTCTTTCACCTCAATCTCCTCAGTCTTACCC
AGTGGCGTATCAATCGTTATCAAACATGTTTTATTCATGTTGTATACCAG
CATTATTTCCTTTGGGTTCATTCCAGTCTTCCATAACTCAATTATGGAAT
CTTTCAGCCATAGCTTGTCAAAACATTTCTCGAGATCTCCGTAGAAAACA
TATAACACTTTGCGCTTTTCTTTATAGCTTTCTATCATTCGTTTCAGGGT
AAAGAGGTGATCTGCTATTCCTCTTTTCTTTCTTCCTCCACATTGAAATG
GGGACATAGAACTTTCAATCAGCTCACGATTTCTGTTTAACAAAactctt
tcgaaaattttgctAACCACATTGGTGATGAAGATTCCACGTTGGttctt
catttcgtttcggcttcctttattcttataaatagatttaattctcattt
ttttccatttttcagggATTGTTCCCTCTTTCAGGATTTCATTAAGTATA
TTCAAAAGACTTATTTTTAAGTCTTCTCCCCCGTACATAAAATACTCTGC
TCTAACTCCTCCTTCGTCGGCCGCTTTTTTGCTCTTTAGTTTTTTAAGAG
CTATTTCGATTTCTTTTGCTGTTATCTCCTTTGTTTCTGCGTTTTTGCTT
GTTTTACGAAGTAAATTGAAATTTCGATCAACTTCCTTCTCTGCTTGTTT
TCCCTCATCATCGTCTGCTGGTATGGTCTGTAACAGTTCTTTGTAATGTT
GCTTGTATACTTCCTTTATTTCTTCCTTTCCGGTTTGCATGACGCCTTGC
TTAGTTTTCATAGCAACTGCCCGGTCGTTCTcgctcttcttttgttttag
aaCCTTCCAGAACCCTGGATTGTTCACTCCTCCTTCCTTGGTTATCCTTT
CTGCAATTTTCTGACCTTCATCTGCGTGCTCTTTTTGCATCGTTTCTTCG
ATTTCTTCGTTTAGAGTTCTAATTGTTTCGTTGTCACCTTTGTCTTTAAT
GTGTTTACGTCGTTCGTGCATGAttcgttttaattttttgcttatTCCGG
TATATTTATTCTTTGTAACCTTTGTAAACGATCTTTTTGCGATTTTCTTT
AATGTTCTTTCCCACTCTTTGTATTTGTTGTTTAGAGGGGTGTTCTTTGA
TACAATCTGTCTCAAGTTATATccatttgttgattttttataCAATTCAA
CATTCTTTGGACTGaagttttgtgattttctccTTCGTACCATGACATGT
TTACCATAAAGGAATTATGGTCTGTATATATCTCCTTTCCTCCTTCTATG
TGGTACGGTGTCCAAAGTCGGTCCTCATCTATAATTCCTTCTTTCAGTCT
GGACTTGTTCCTTTTCTCTATCATCACATAGTCAATCATCGATTTTGACC
TTTCGTCGTTTCTGGTATAGAATCCTCCTACTTTATCATCTCTATTTACA
ATGTACATTTTGTTTCTCTTCTCAAGCTCTTCCAGCATTTTTCCCGCTCC
CGATTGCTCTTGAGTATTTTTTCCTTtcttaattttgattttggcattGA
AGTCTCCAGT Run BLAST on NCBI protein sequence of TCONS_00045769-protein >TCONS_00045769-protein ID=TCONS_00045769-protein|Name=TCONS_00045769-protein|organism=Clytia hemisphaerica|type=polypeptide|length=581bp
MVRRRKSQNFSPKNVELYKKSTNGYNLRQIVSKNTPLNNKYKEWERTLKK
IAKRSFTKVTKNKYTGISKKLKRIMHERRKHIKDKGDNETIRTLNEEIEE
TMQKEHADEGQKIAERITKEGGVNNPGFWKVLKQKKSENDRAVAMKTKQG
VMQTGKEEIKEVYKQHYKELLQTIPADDDEGKQAEKEVDRNFNLLRKTSK
NAETKEITAKEIEIALKKLKSKKAADEGGVRAEYFMYGGEDLKISLLNIL
NEILKEGTIPEKWKKMRIKSIYKNKGSRNEMKNQRGIFITNVVSKIFERV
LLNRNRELIESSMSPFQCGGRKKRGIADHLFTLKRMIESYKEKRKVLYVF
YGDLEKCFDKLWLKDSIIELWKTGMNPKEIMLVYNMNKTCLITIDTPLGK
TEEIEVKEIVRQGTIWGPTLCSITTDKVNNVAERVFSKYEEAEVEPMVYV
DDICATGDEENIISAVKNCHRLEKTKKMTFNNEKSNYQAIGGTKKNKKMI
QLKVKKGNIKRCEKYKYLGEVINEKGDLEDTIRKKGSKARGITLAIQKLS
NKAGYFRNSVAEKLIKTTLLPVLTYGTETWS Run BLAST on NCBI transcript from alignment at scaffold_100:71911..73970 Legend: exonfive_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00045769 ID=TCONS_00045769|Name=TCONS_00045769|organism=Clytia hemisphaerica|type=transcript|length=2060bp|location=Sequence derived from alignment at scaffold_100:71911..73970 (Clytia hemisphaerica)
ACTGGAGACTTCaatgccaaaatcaaaattaagaAAGGAAAAAATACTCA
AGAGCAATCGGGAGCGGGAAAAATGCTGGAAGAGCTTGAGAAGAGAAACA
AAATGTACATTGTAAATAGAGATGATAAAGTAGGAGGATTCTATACCAGA
AACGACGAAAGGTCAAAATCGATGATTGACTATGTGATGATAGAGAAAAG
GAACAAGTCCAGACTGAAAGAAGGAATTATAGATGAGGACCGACTTTGGA
CACCGTACCACATAGAAGGAGGAAAGGAGATATATACAGACCATAATTCC
TTTATGGTAAACATGTCATGGTACGAAggagaaaatcacaaaacttCAGT
CCAAAGAATGTTGAATTGtataaaaaatcaacaaatggATATAACTTGAG
ACAGATTGTATCAAAGAACACCCCTCTAAACAACAAATACAAAGAGTGGG
AAAGAACATTAAAGAAAATCGCAAAAAGATCGTTTACAAAGGTTACAAAG
AATAAATATACCGGAataagcaaaaaattaaaacgaaTCATGCACGAACG
ACGTAAACACATTAAAGACAAAGGTGACAACGAAACAATTAGAACTCTAA
ACGAAGAAATCGAAGAAACGATGCAAAAAGAGCACGCAGATGAAGGTCAG
AAAATTGCAGAAAGGATAACCAAGGAAGGAGGAGTGAACAATCCAGGGTT
CTGGAAGGttctaaaacaaaagaagagcgAGAACGACCGGGCAGTTGCTA
TGAAAACTAAGCAAGGCGTCATGCAAACCGGAAAGGAAGAAATAAAGGAA
GTATACAAGCAACATTACAAAGAACTGTTACAGACCATACCAGCAGACGA
TGATGAGGGAAAACAAGCAGAGAAGGAAGTTGATCGAAATTTCAATTTAC
TTCGTAAAACAAGCAAAAACGCAGAAACAAAGGAGATAACAGCAAAAGAA
ATCGAAATAGCTCTTAAAAAACTAAAGAGCAAAAAAGCGGCCGACGAAGG
AGGAGTTAGAGCAGAGTATTTTATGTACGGGGGAGAAGACTTAAAAATAA
GTCTTTTGAATATACTTAATGAAATCCTGAAAGAGGGAACAATccctgaa
aaatggaaaaaaatgagaattaaatctatttataagaataaaggaagccg
aaacgaaatgaagaaCCAACGTGGAATCTTCATCACCAATGTGGTTagca
aaattttcgaaagagtTTTGTTAAACAGAAATCGTGAGCTGATTGAAAGT
TCTATGTCCCCATTTCAATGTGGAGGAAGAAAGAAAAGAGGAATAGCAGA
TCACCTCTTTACCCTGAAACGAATGATAGAAAGCTATAAAGAAAAGCGCA
AAGTGTTATATGTTTTCTACGGAGATCTCGAGAAATGTTTTGACAAGCTA
TGGCTGAAAGATTCCATAATTGAGTTATGGAAGACTGGAATGAACCCAAA
GGAAATAATGCTGGTATACAACATGAATAAAACATGTTTGATAACGATTG
ATACGCCACTGGGTAAGACTGAGGAGATTGAGGTGAAAGAAATAGTTCGA
CAAGGAACGATATGGGGACCAACCCTTTGTTCCATTACGACAGATAAAGT
AAATAACGTAGCAGAGAGAGTATTTTCAAAATACGAAGAGGCGGAGGTTG
AACCTATGGTTTACGTAGACGACATATGTGCAACAGGTGACGAAGAAAAC
ATAATAAGCGCGGTAAAAAACTGTCATAGACttgagaaaacaaagaaaat
gacaTTTAACAATGAGAAGAGCAACTACCAAGCAATCGGTGGAACAAAGA
AGAACAAAAAGATGATACAGCTgaaggtgaaaaaaggaaatattAAAAGG
TGCGAAAAATATAAATACCTAGGAGAAGTTATAAACGAAAAGGGAGACCT
TGAAGACACAATCAGAAAGAAAGGAAGTAAAGCGAGAGGGATTACACTAG
CAATCCAAAAACTTTCGAACAAAGCAGGTTATTTTAGAAACAGTGTAGCA
GAAAAGTTAATTAAAACAACATTGCTGCCAGTTTTAACATACGGAACAGA
AACATGGTCG Coding sequence (CDS) from alignment at scaffold_100:71911..73970 >TCONS_00045769 ID=TCONS_00045769|Name=TCONS_00045769|organism=Clytia hemisphaerica|type=CDS|length=1743bp|location=Sequence derived from alignment at scaffold_100:71911..73970 (Clytia hemisphaerica)
ATGGTACGAAggagaaaatcacaaaacttCAGTCCAAAGAATGTTGAATT
GtataaaaaatcaacaaatggATATAACTTGAGACAGATTGTATCAAAGA
ACACCCCTCTAAACAACAAATACAAAGAGTGGGAAAGAACATTAAAGAAA
ATCGCAAAAAGATCGTTTACAAAGGTTACAAAGAATAAATATACCGGAat
aagcaaaaaattaaaacgaaTCATGCACGAACGACGTAAACACATTAAAG
ACAAAGGTGACAACGAAACAATTAGAACTCTAAACGAAGAAATCGAAGAA
ACGATGCAAAAAGAGCACGCAGATGAAGGTCAGAAAATTGCAGAAAGGAT
AACCAAGGAAGGAGGAGTGAACAATCCAGGGTTCTGGAAGGttctaaaac
aaaagaagagcgAGAACGACCGGGCAGTTGCTATGAAAACTAAGCAAGGC
GTCATGCAAACCGGAAAGGAAGAAATAAAGGAAGTATACAAGCAACATTA
CAAAGAACTGTTACAGACCATACCAGCAGACGATGATGAGGGAAAACAAG
CAGAGAAGGAAGTTGATCGAAATTTCAATTTACTTCGTAAAACAAGCAAA
AACGCAGAAACAAAGGAGATAACAGCAAAAGAAATCGAAATAGCTCTTAA
AAAACTAAAGAGCAAAAAAGCGGCCGACGAAGGAGGAGTTAGAGCAGAGT
ATTTTATGTACGGGGGAGAAGACTTAAAAATAAGTCTTTTGAATATACTT
AATGAAATCCTGAAAGAGGGAACAATccctgaaaaatggaaaaaaatgag
aattaaatctatttataagaataaaggaagccgaaacgaaatgaagaaCC
AACGTGGAATCTTCATCACCAATGTGGTTagcaaaattttcgaaagagtT
TTGTTAAACAGAAATCGTGAGCTGATTGAAAGTTCTATGTCCCCATTTCA
ATGTGGAGGAAGAAAGAAAAGAGGAATAGCAGATCACCTCTTTACCCTGA
AACGAATGATAGAAAGCTATAAAGAAAAGCGCAAAGTGTTATATGTTTTC
TACGGAGATCTCGAGAAATGTTTTGACAAGCTATGGCTGAAAGATTCCAT
AATTGAGTTATGGAAGACTGGAATGAACCCAAAGGAAATAATGCTGGTAT
ACAACATGAATAAAACATGTTTGATAACGATTGATACGCCACTGGGTAAG
ACTGAGGAGATTGAGGTGAAAGAAATAGTTCGACAAGGAACGATATGGGG
ACCAACCCTTTGTTCCATTACGACAGATAAAGTAAATAACGTAGCAGAGA
GAGTATTTTCAAAATACGAAGAGGCGGAGGTTGAACCTATGGTTTACGTA
GACGACATATGTGCAACAGGTGACGAAGAAAACATAATAAGCGCGGTAAA
AAACTGTCATAGACttgagaaaacaaagaaaatgacaTTTAACAATGAGA
AGAGCAACTACCAAGCAATCGGTGGAACAAAGAAGAACAAAAAGATGATA
CAGCTgaaggtgaaaaaaggaaatattAAAAGGTGCGAAAAATATAAATA
CCTAGGAGAAGTTATAAACGAAAAGGGAGACCTTGAAGACACAATCAGAA
AGAAAGGAAGTAAAGCGAGAGGGATTACACTAGCAATCCAAAAACTTTCG
AACAAAGCAGGTTATTTTAGAAACAGTGTAGCAGAAAAGTTAATTAAAAC
AACATTGCTGCCAGTTTTAACATACGGAACAGAAACATGGTCG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00045769-exon-scaffold_100-1491911889:71911..73970 | TCONS_00045769-exon-scaffold_100-1491911889:71911..73970 | Clytia hemisphaerica | exon |
| TCONS_00045769-exon-scaffold_100-1510915933:71911..73970 | TCONS_00045769-exon-scaffold_100-1510915933:71911..73970 | Clytia hemisphaerica | exon |
| TCONS_00045769-exon-scaffold_100-1575043694:71911..73970 | TCONS_00045769-exon-scaffold_100-1575043694:71911..73970 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_100 | supercontig | scaffold_100:71911..73970 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR000477 | RT_dom |
Blast
The following BLAST results are available for this feature:
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