TCONS_00045762 (transcript) - C. hemisphaerica

Overview
NameTCONS_00045762
Unique NameTCONS_00045762
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length175

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00045762 ID=TCONS_00045762|Name=TCONS_00045762|organism=Clytia hemisphaerica|type=transcript|length=175bp
AGACCTAAACGAAATACtttcttcattcaaaatgatagTGAATGAACCAA
CTCATCTTGCTGGTGGCCTTCTAGACCatgtttatataaaaacaagtttt
attaGCCAGAAAGAAGTGAATTGCTTTATAAAGGATATTTATTTCTCCGA
CCATGATGGAGTTTGTTTCACTGTT
Run BLAST on NCBI

transcript from alignment at scaffold_100:5818..5992

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00045762 ID=TCONS_00045762|Name=TCONS_00045762|organism=Clytia hemisphaerica|type=transcript|length=175bp|location=Sequence derived from alignment at scaffold_100:5818..5992 (Clytia hemisphaerica)
AACAGTGAAACAAACTCCATCATGGTCGGAGAAATAAATATCCTTTATAA
AGCAATTCACTTCTTTCTGGCtaataaaacttgtttttatataaacatGG
TCTAGAAGGCCACCAGCAAGATGAGTTGGTTCATTCActatcattttgaa
tgaagaaaGTATTTCGTTTAGGTCT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_029240XLOC_029240Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00045762-exon-scaffold_100-1491911889:5818..5992TCONS_00045762-exon-scaffold_100-1491911889:5818..5992Clytia hemisphaericaexon
TCONS_00045762-exon-scaffold_100-1510915933:5818..5992TCONS_00045762-exon-scaffold_100-1510915933:5818..5992Clytia hemisphaericaexon
TCONS_00045762-exon-scaffold_100-1575043694:5818..5992TCONS_00045762-exon-scaffold_100-1575043694:5818..5992Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_100supercontigscaffold_100:5818..5992 .
Expression
No biomaterial libraries express this feature.
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00045762 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top