|
Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00045744 ID=TCONS_00045744|Name=TCONS_00045744|organism=Clytia hemisphaerica|type=transcript|length=2572bpRun BLAST on NCBI transcript from alignment at scaffold_100:706912..740776- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00045744 ID=TCONS_00045744|Name=TCONS_00045744|organism=Clytia hemisphaerica|type=transcript|length=33865bp|location=Sequence derived from alignment at scaffold_100:706912..740776- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00045744 vs. Swiss-Prot (Human)
Match: TMC7 (Transmembrane channel-like protein 7 OS=Homo sapiens GN=TMC7 PE=1 SV=1) HSP 1 Score: 157.918 bits (398), Expect = 6.923e-40 Identity = 92/238 (38.66%), Postives = 150/238 (63.03%), Query Frame = 3
Query: 102 CWENQVGSQMFNLILIDFFVSVGITIFGETGRKYIYRYLGCGCNLGEKIGMQEFQIPKNVLELVYGQSLIWIGTFFAPLIPVVGIIKLFILFYVKKISLMLNCKPSSQPYQGARSNYXXXXXXXXXXXXCSFAVGWGLTRIKTS-CCGPFKNVGCVADYEMMDVVGRTIDSWPSWIGGIIDFIKTTAXXXXXXXXXXXXXXXXXAMTKAHEKMIHMLKDQLIMEGRDKRFLMDRLIRA 812
CWE QVG +M+ L++ DF + + +T+F + RK + Y C L + G QEF IP NVL +VYGQ++ WIG FF+PL+P + +K I+FYVK+ SL+ C+PS +P++ + SN+FF L+LL+ L + ++RI +S CGPF N +V+ +T+ ++PS + I + + AF P F+II L+++Y+ A+ AH++++ L++QL +E RDK +L+ +L A
Sbjct: 486 CWETQVGQEMYKLMIFDFIIILAVTLFVDFPRKLLVTYCS-SCKLIQCWGQQEFAIPDNVLGIVYGQTICWIGAFFSPLLPAIATLKFIIIFYVKEWSLLYTCRPSPRPFRASNSNFFFLLVLLIGLCLAIIPLTISISRIPSSKACGPFTNFNTT-----WEVIPKTVSTFPSSLQSFIHGVTSEAFAVPFFMIICLIMFYFIALAGAHKRVVIQLREQLSLESRDKCYLIQKLTEA 717 The following BLAST results are available for this feature:
BLAST of TCONS_00045744 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
|
Copyright © 2026, MARIMBA.