TCONS_00045740 (transcript) - C. hemisphaerica

Overview
NameTCONS_00045740
Unique NameTCONS_00045740
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length590

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00045740 ID=TCONS_00045740|Name=TCONS_00045740|organism=Clytia hemisphaerica|type=transcript|length=590bp
GTGGTTTTTGCTATTGGCTGGTGGATGTTTCTGATGGTTTCCTGATGTGA
TGGTTTTATTATCGTTTTGACATATTTTACAGCATGATGCCTGATATGTT
TTTGGAAACGTATTATAAGCAATAAGAAACTGGAATAAATATCACTCAAG
ACTTTTCACTTCAAAAACATCAAccaaaatgaagaagagaacGACTGCTT
TTGAAAGCAATGACAAAGGAAGGATTGGACCATCTATTAAGGAGTTCCAA
CAAGAAAATTGTAAATCTGAACAACTTTCCAAGACCAGAGTGTTCTTTCT
TAACTTGTCATGGTTTGGAATGAATGTTATGTATCTGATTCTGTCAGTCG
AAGTGGTGCCCTCACAAGTACATGCATTGGTGGGCTCAGAAATGAAAGGA
CAAATGTTTGGTGCCATGGTGGCAAGTGGAGCAATTGTGACGTTTATTAT
AAGTCCCCTTATTGGAATTAAAAGTGATCGTTTACAATCCCCGTATGGCA
GAAGAAGGCCTTTGATGGTGGCGGGCACTGTCCTATTGATacTCAGTTTG
TTTGGGATGGCTTTCAGTGCACCAGAAAGTATAAGGTAAC
Run BLAST on NCBI

protein sequence of TCONS_00045740-protein

>TCONS_00045740-protein ID=TCONS_00045740-protein|Name=TCONS_00045740-protein|organism=Clytia hemisphaerica|type=polypeptide|length=136bp
MKKRTTAFESNDKGRIGPSIKEFQQENCKSEQLSKTRVFFLNLSWFGMNV
MYLILSVEVVPSQVHALVGSEMKGQMFGAMVASGAIVTFIISPLIGIKSD
RLQSPYGRRRPLMVAGTVLLILSLFGMAFSAPESIR
Run BLAST on NCBI

transcript from alignment at scaffold_100:602484..606336-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00045740 ID=TCONS_00045740|Name=TCONS_00045740|organism=Clytia hemisphaerica|type=transcript|length=3853bp|location=Sequence derived from alignment at scaffold_100:602484..606336- (Clytia hemisphaerica)
GTGGTTTTTGCTATTGGCTGGTGGATGTTTCTGATGGTTTCCTGATGTGA
TGGTTTTATTATCGTTTTGACATATTTTACAGCATGATGCCTGATATGTT
TTTGGAAACGTATTATAAGCAATAAGAAACTGGAATAAATATCACTCAAG
ACTTTTCACTTCAAAAACATCAACCAAAATGAAGAAGAGAACGACTGCTT
TTGAAAGCAATGACAAAGGTAAGTTTGTTGGTTTTTTTTGTATAAAGTTT
TTCATTTGTGCTTCATCATTCTATGTACTGTATCTAGGTGCAGGACCTTC
ATTATCCAGCACCCTCTCTCATCAAAGTTTTCTAACTCCTGCTGGGAGAT
TTGGTTGTATCAATTCTCAAGTGAATGATCGATAGTGTTCAAATTTTTTG
ATCAATCGAGGGAACATACTCATTGTTTTGTGTGCTTTGATATTGAATAT
CAACAAAGAAATTACAAAATGTTCTTTGTCTTCTTTTTAGGAAGGATTGG
ACCATCTATTAAGGAGTTCCAACAAGAGTTAGTAGATTCACTTATAAATA
AAAGCCAAAAGTGGTTTTAGGAGAACGCAACGGTTTGTTGAATAATTAAT
TACTACAGCATAGATTATCTACTTTAAGCAGTAAAAATGAGATCAATTAT
TTTGTTTCTGGGCAACAGCTGTCTTGTAGAATACAATCAATTAGATGACA
TGATTATAAAACCATGCTGGAGTAATTACAGTAAGTTGGTCTAATGTCGA
CATCCTTCTTTTAATTTCAACACCCAGTTTTAGAGATTAGGAATGATAGG
AAGGTCAAGATCACTGATAGATTAAAGATTTTATTTTTTACGTTCTCATT
GCTAAGCAAAGAAAAAAGTCACCCTAAAAGAGAATGGCAAAATTAGAAGA
GGGATCTGGACATTAAACTAATTTACGGTATATTTGATAAACTGTCGTGT
TCTTCTATAATCAAATGCTCTGGTAGTAAGATGGTCTCCGCTTTTAAATG
CTTATAAATAATTTTTCTTGACATCCTACTAGATGAAGGAATACCTTTTT
TACCACAAATGCTGTAAAAACGTCGATTTTACATTTTTCTTAAACTGTAA
TTGTAGAACTCATGAATAAATCAAACAAAAGGCAATTTTTGTACAAAACT
AGTGACATCTTTTTAACTCGCACACAGGTGAAATGTTTTTTGTAGATAAG
ATTTTTTCAGTTATGAAAACTGTGCCTTAATTTCCATATACTACAATGGA
GAAAATCCTGTGACTATTAAAGTTAATTTCTTATTAACTCTACATAATTA
TTCCTAACTTGGTAGTTACTGAGTAATTTAATAGATTTTTTGCTAGTCAG
GATGTCATGTTGAATAATTAAAAAGTCCAATATTAAAACAATGACACATA
AATGCATAATTACTTTTGCGTCCACTATTTTTTTTTTTTTTTTAATAAAA
TAAATTGCTAGTCCAATTTCATTGATGAATAAATAAATCCTTTCATTGTT
TTGATGCTTGAGTTTTTCATTATTCATCCTGACATCCTGACTTGCAAAAG
TCTATTTAACTCTATGACTTTTAGTCTCAATGATNTCCTGACATCCTGAC
TTGCAAAAGTCTATTTAACTCTACGATTTTAGTCTCAATGAATGTTGAAT
TGTATAAGTATAAAGGAGGTCCGTTGATAAATTTCATTAAAAAAATATTC
TGTTTACATTTAGAAATTGTAAATCTGAACAACTTTCCAAGACCAGAGTG
TTCTTTCTTAACTTGTCATGGTTTGGAATGAATGTTATGTATCTGATTCT
GTCAGTCGAAGGTATGCACTGAAAAATGTTTTAGTACATTGTGTATTGTT
ATTTATGATATATTTTATGATTTTATTCACTTTGGAGTCTTATTTTCACA
ATGCATTAATTGTCATTTTTTGTTTTTTTATTCATTATTAGTGGTGCCCT
CACAAGTACATGCATTGGTGGGCTCAGAAATGAAAGGACAAATGTTTGGT
GCCATGGTGGCAAGTGGAGCAAGTAAACTGATTTTTCTTTTTGAGAATAT
AAGCTAATGAATTGACTACAGGGTGTCTTGTAAAAAAGTACTCTTTTAGA
CTACTTCCAAGTAGAAAAAAATTGTTTGTGTATAACAAAATCTGGGTTTG
ATATGAGAACATCTTTAGACCTCTTAACATCTTAAAATTATTTCCATATT
GTCAATTAAAGTTTATAGGTTTTTTCTGTTTCATTGTTTCATTGTTGCAT
TGTTGTGATTAGTAAATAATTGAGTTTCGATTCTTTATAAAAAGCTTGCT
TTATTTATTTTCTAGTTGTGACGTTTATTATAAGTCCCCTTATTGGAATT
AAAAGGTATTTATATTTCATAAACAATACGTCAAAATAATTTGAAAATGT
ATGATGTGAAATCTCAACTTTATTACTTAGAGGACATTTTCTGCAGACAA
AATACCGGGTGCGCCACAAAAAAGTTTCTCTCTTTGAAACTAATTTTTTT
GAAATCTAAAAATTTTAAAAGAACCATTCCTATTTTATTGGAAAGAAGAA
AAATAAACTTCATTTATTGAATTTGATTCATTTTCATTAGATCAAAAGTT
ATGTCCAATTGAATAAAAATGTTACTTTCAGAAAGTGCTCGAAAACGTTA
AAAATCGACCTATCAAATTTTTACTTTAAATTTGGCAATCGCAATAGCCT
TTACATGATTAAGAGCATTTTTCTTAAACCAAACACATAAATTTTGAAAC
TGAAGGGTCGAAAGGGCTCAAAATCTTCATCAAAATTAATTTGATTTAGT
TTTACCAAAATTTTCCTCAGATTTTTGGTTCTAGACTGGACTAAGTCTAT
GTAAGGCTGAATCTACCTCGAAACCCATATTTGATGTATTTTTATGAATT
CTACCAGATCTTTTGGCCTTTTTCGACGAATTTTCTTCCTTTCATTGAAA
TTCAACCTTCCTTTAAATAACAAAAGGTCATTTAAACAGTTAATTATCAT
TTTTAATGACTGAAACAAAAATACTGATACATCTTGTAATTATGCTTCTG
AATAATTTGATAGGTCGATTTTTAACATTTTTGAGCACTTTCCAAAAGTA
ACTTTTTTATTCAATTGAGGATAACTTTTGATCTAATGAATCGAATTCGA
TAAATGACCCATCAAAATTTAAGTTTATTTTTCTTCTTTCCAATAAAATA
GGAATGGTTCTTTTAAAATTTTTAGATTTCGAGAAAATTACTTTTAAAGA
GAGAAACTTTTTTGTGGCGCACCCGGTATATCATTTGGTGTTAAGATAAT
GTTAAGATAAACTTGAAATCAATGAGTTGTAATAAAAAAGGCTTCACCAT
TCGTGACATTAAGTAACAATATGAATTTCATTGTTTTCTTTTATAGTGAT
CGTTTACAATCCCCGTATGGCAGAAGAAGGCCTTTGATGGTGGCGGGCAC
TGTCCTATTGATGTAAATTGTTGTGCTTGTTATATTTTCCTCAACATTAA
ATTGAAATTTCTTCACTATTGATTTATTTTTTAGTTTCTGCATGTGATTG
GATGATAAACACCACCTCGTCCCTGTGTATCCCAGGCTTTATTTACGTTA
CTGATTGACGCCAGAGACGCCTAGCGTTATCAGTATCAAAAAGCTAAAAT
ACGCAGGGAACGAGGTTACGATAAACATTTTCAAAGTAGCATTGATTCCC
TAGTCCAAAATGGGAATGGTTCTTTTATAATGAATCTGCTGACATGACTT
ACACGGAAAACAACGATGACATCAATATATTTTATATCATTTTTTTTATT
CAGACTCAGTTTGTTTGGGATGGCTTTCAGTGCACCAGAAAGTATAAGGT
AAC

Coding sequence (CDS) from alignment at scaffold_100:602484..606336-

>TCONS_00045740 ID=TCONS_00045740|Name=TCONS_00045740|organism=Clytia hemisphaerica|type=CDS|length=2877bp|location=Sequence derived from alignment at scaffold_100:602484..606336- (Clytia hemisphaerica)
ACTCAGTTTGTTTGGGATGGCTTTCAGTGCACCAGAAAGTATAAGGTAAT
GATCGTTTACAATCCCCGTATGGCAGAAGAAGGCCTTTGATGGTGGCGGG
CACTGTCCTATTGATTTGTGACGTTTATTATAAGTCCCCTTATTGGAATT
AAAAGTGGTGCCCTCACAAGTACATGCATTGGTGGGCTCAGAAATGAAAG
GACAAATGTTTGGTGCCATGGTGGCAAGTGGAGCAAAAATTGTAAATCTG
AACAACTTTCCAAGACCAGAGTGTTCTTTCTTAACTTGTCATGGTTTGGA
ATGAATGTTATGTATCTGATTCTGTCAGTCGAAGGAAGGATTGGACCATC
TATTAAGGAGTTCCAACAAGAATGAAGAAGAGAACGACTGCTTTTGAAAG
CAATGACAAAGACTCAGTTTGTTTGGGATGGCTTTCAGTGCACCAGAAAG
TATAAGGTAATGATCGTTTACAATCCCCGTATGGCAGAAGAAGGCCTTTG
ATGGTGGCGGGCACTGTCCTATTGATTTGTGACGTTTATTATAAGTCCCC
TTATTGGAATTAAAAGTGGTGCCCTCACAAGTACATGCATTGGTGGGCTC
AGAAATGAAAGGACAAATGTTTGGTGCCATGGTGGCAAGTGGAGCAAAAA
TTGTAAATCTGAACAACTTTCCAAGACCAGAGTGTTCTTTCTTAACTTGT
CATGGTTTGGAATGAATGTTATGTATCTGATTCTGTCAGTCGAAGGAAGG
ATTGGACCATCTATTAAGGAGTTCCAACAAGAATGAAGAAGAGAACGACT
GCTTTTGAAAGCAATGACAAAGACTCAGTTTGTTTGGGATGGCTTTCAGT
GCACCAGAAAGTATAAGGTAATGATCGTTTACAATCCCCGTATGGCAGAA
GAAGGCCTTTGATGGTGGCGGGCACTGTCCTATTGATTTGTGACGTTTAT
TATAAGTCCCCTTATTGGAATTAAAAGTGGTGCCCTCACAAGTACATGCA
TTGGTGGGCTCAGAAATGAAAGGACAAATGTTTGGTGCCATGGTGGCAAG
TGGAGCAAAAATTGTAAATCTGAACAACTTTCCAAGACCAGAGTGTTCTT
TCTTAACTTGTCATGGTTTGGAATGAATGTTATGTATCTGATTCTGTCAG
TCGAAGGAAGGATTGGACCATCTATTAAGGAGTTCCAACAAGAATGAAGA
AGAGAACGACTGCTTTTGAAAGCAATGACAAAGACTCAGTTTGTTTGGGA
TGGCTTTCAGTGCACCAGAAAGTATAAGGTAATGATCGTTTACAATCCCC
GTATGGCAGAAGAAGGCCTTTGATGGTGGCGGGCACTGTCCTATTGATTT
GTGACGTTTATTATAAGTCCCCTTATTGGAATTAAAAGTGGTGCCCTCAC
AAGTACATGCATTGGTGGGCTCAGAAATGAAAGGACAAATGTTTGGTGCC
ATGGTGGCAAGTGGAGCAAAAATTGTAAATCTGAACAACTTTCCAAGACC
AGAGTGTTCTTTCTTAACTTGTCATGGTTTGGAATGAATGTTATGTATCT
GATTCTGTCAGTCGAAGGAAGGATTGGACCATCTATTAAGGAGTTCCAAC
AAGAATGAAGAAGAGAACGACTGCTTTTGAAAGCAATGACAAAGACTCAG
TTTGTTTGGGATGGCTTTCAGTGCACCAGAAAGTATAAGGTAATGATCGT
TTACAATCCCCGTATGGCAGAAGAAGGCCTTTGATGGTGGCGGGCACTGT
CCTATTGATTTGTGACGTTTATTATAAGTCCCCTTATTGGAATTAAAAGT
GGTGCCCTCACAAGTACATGCATTGGTGGGCTCAGAAATGAAAGGACAAA
TGTTTGGTGCCATGGTGGCAAGTGGAGCAAAAATTGTAAATCTGAACAAC
TTTCCAAGACCAGAGTGTTCTTTCTTAACTTGTCATGGTTTGGAATGAAT
GTTATGTATCTGATTCTGTCAGTCGAAGGAAGGATTGGACCATCTATTAA
GGAGTTCCAACAAGAATGAAGAAGAGAACGACTGCTTTTGAAAGCAATGA
CAAAGACTCAGTTTGTTTGGGATGGCTTTCAGTGCACCAGAAAGTATAAG
GTAATGATCGTTTACAATCCCCGTATGGCAGAAGAAGGCCTTTGATGGTG
GCGGGCACTGTCCTATTGATTTGTGACGTTTATTATAAGTCCCCTTATTG
GAATTAAAAGTGGTGCCCTCACAAGTACATGCATTGGTGGGCTCAGAAAT
GAAAGGACAAATGTTTGGTGCCATGGTGGCAAGTGGAGCAAAAATTGTAA
ATCTGAACAACTTTCCAAGACCAGAGTGTTCTTTCTTAACTTGTCATGGT
TTGGAATGAATGTTATGTATCTGATTCTGTCAGTCGAAGGAAGGATTGGA
CCATCTATTAAGGAGTTCCAACAAGAATGAAGAAGAGAACGACTGCTTTT
GAAAGCAATGACAAAGACTCAGTTTGTTTGGGATGGCTTTCAGTGCACCA
GAAAGTATAAGGTAATGATCGTTTACAATCCCCGTATGGCAGAAGAAGGC
CTTTGATGGTGGCGGGCACTGTCCTATTGATTTGTGACGTTTATTATAAG
TCCCCTTATTGGAATTAAAAGTGGTGCCCTCACAAGTACATGCATTGGTG
GGCTCAGAAATGAAAGGACAAATGTTTGGTGCCATGGTGGCAAGTGGAGC
AAAAATTGTAAATCTGAACAACTTTCCAAGACCAGAGTGTTCTTTCTTAA
CTTGTCATGGTTTGGAATGAATGTTATGTATCTGATTCTGTCAGTCGAAG
GAAGGATTGGACCATCTATTAAGGAGTTCCAACAAGAATGAAGAAGAGAA
CGACTGCTTTTGAAAGCAATGACAAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_029231XLOC_029231Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00045740-proteinTCONS_00045740-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00045740-exon-scaffold_100-1575043694:606119..606336TCONS_00045740-exon-scaffold_100-1575043694:606119..606336Clytia hemisphaericaexon
TCONS_00045740-exon-scaffold_100-1575043694:605810..605846TCONS_00045740-exon-scaffold_100-1575043694:605810..605846Clytia hemisphaericaexon
TCONS_00045740-exon-scaffold_100-1575043694:604526..604623TCONS_00045740-exon-scaffold_100-1575043694:604526..604623Clytia hemisphaericaexon
TCONS_00045740-exon-scaffold_100-1575043694:604315..604395TCONS_00045740-exon-scaffold_100-1575043694:604315..604395Clytia hemisphaericaexon
TCONS_00045740-exon-scaffold_100-1575043694:603982..604021TCONS_00045740-exon-scaffold_100-1575043694:603982..604021Clytia hemisphaericaexon
TCONS_00045740-exon-scaffold_100-1575043694:602875..602940TCONS_00045740-exon-scaffold_100-1575043694:602875..602940Clytia hemisphaericaexon
TCONS_00045740-exon-scaffold_100-1575043694:602484..602533TCONS_00045740-exon-scaffold_100-1575043694:602484..602533Clytia hemisphaericaexon
TCONS_00045740-exon-scaffold_100-1510915933:606119..606336TCONS_00045740-exon-scaffold_100-1510915933:606119..606336Clytia hemisphaericaexon
TCONS_00045740-exon-scaffold_100-1510915933:605810..605846TCONS_00045740-exon-scaffold_100-1510915933:605810..605846Clytia hemisphaericaexon
TCONS_00045740-exon-scaffold_100-1510915933:604526..604623TCONS_00045740-exon-scaffold_100-1510915933:604526..604623Clytia hemisphaericaexon
TCONS_00045740-exon-scaffold_100-1510915933:604315..604395TCONS_00045740-exon-scaffold_100-1510915933:604315..604395Clytia hemisphaericaexon
TCONS_00045740-exon-scaffold_100-1510915933:603982..604021TCONS_00045740-exon-scaffold_100-1510915933:603982..604021Clytia hemisphaericaexon
TCONS_00045740-exon-scaffold_100-1510915933:602875..602940TCONS_00045740-exon-scaffold_100-1510915933:602875..602940Clytia hemisphaericaexon
TCONS_00045740-exon-scaffold_100-1510915933:602484..602533TCONS_00045740-exon-scaffold_100-1510915933:602484..602533Clytia hemisphaericaexon
TCONS_00045740-exon-scaffold_100-1491911889:606119..606336TCONS_00045740-exon-scaffold_100-1491911889:606119..606336Clytia hemisphaericaexon
TCONS_00045740-exon-scaffold_100-1491911889:605810..605846TCONS_00045740-exon-scaffold_100-1491911889:605810..605846Clytia hemisphaericaexon
TCONS_00045740-exon-scaffold_100-1491911889:604526..604623TCONS_00045740-exon-scaffold_100-1491911889:604526..604623Clytia hemisphaericaexon
TCONS_00045740-exon-scaffold_100-1491911889:604315..604395TCONS_00045740-exon-scaffold_100-1491911889:604315..604395Clytia hemisphaericaexon
TCONS_00045740-exon-scaffold_100-1491911889:603982..604021TCONS_00045740-exon-scaffold_100-1491911889:603982..604021Clytia hemisphaericaexon
TCONS_00045740-exon-scaffold_100-1491911889:602875..602940TCONS_00045740-exon-scaffold_100-1491911889:602875..602940Clytia hemisphaericaexon
TCONS_00045740-exon-scaffold_100-1491911889:602484..602533TCONS_00045740-exon-scaffold_100-1491911889:602484..602533Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_100supercontigscaffold_100:602484..606336 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.980951	0.544825	0	0	2.20478	0.696899	5.88545	12.594	6.74827	4.05749	5.56609	4.13762	5.262	6.21063	2.87792	11.5756	6.36116	8.74108	0.692892	0.727458	3.78131	4.34749	4.37743	3.59146	4.21282	6.57972	1.27682	1.19625	2.06706	1.66394
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR020846MFS_dom
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00045740 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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