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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00045729 ID=TCONS_00045729|Name=TCONS_00045729|organism=Clytia hemisphaerica|type=transcript|length=1293bp
CGATCATAGATAGATAGAATTATTTTTTAGATTACTGGTTTCAAATTTCC
TCTATGATTTATTCATTACTAAATCACACTTTGACCGGTGAGGACATATG
CTATAGAAAGATAGAGACTTGTTATCAAAGTGATCAGTATCAGATATAGT
TGAGAGATGCGACCACCTTCAAATACATTTGAGAATTGTGTTGCAGTACC
ATTAACCTTTTATCGCTACCAACAACCAAACGAAGATATGTCTTTATACA
CAACAAACGAAGAAGTCGAATCTATCATACACAAATCATCAACCCTACGC
AACCGTAAACGAAGAAAACTTACACCAACCAAAAAGAAATGTGTTCCAAT
ATGGCGGCCATACCTTAACGAGAATAACAACACAGATTCGACGATAACAA
ACGCTCACATCATTAACAGCCCACCGAAACTCAAACGCTATTACGACCAA
TCACCGCCAAGTTTCATATTCCGACCCGTCGATATCCCGATACTAGAATG
CACCTCCGTCACTGAAAAACACGACGACTACGACCGACGGACACCAGAGT
TGGTCAAAATGCGACTTTCGCCGGATTGTTGGTCCCGTTACTCTTTTTCT
CCGTCAAGTTCGTCTGTTGGGtctattgatgacgtcacagtgTCCCCTAA
ACTGAAACATAACCGAAATGgTTCACTCAAGCGTAACGAGCCATATCACG
GATGCGCATCCAACCCTCGattaaaacgttcgaaattTAACGAAGAACAA
TTAATTACCCTTAATGACATGTTTTATAAAAAGACTTATCTCTCATTACA
AGAAAGACATGATTTGGCTGCCAAACTTCAACTTAGTGAAGAACAAGTGA
AAAATTGGTTTCAGAACAAACGCATGAAAACGAAAAGAGACTATATCCAC
GCTGTTGATANTGAAAAATTGGTTTCAAAACAAACGCATGAAAACGAAAA
GAGATTATATCCACGCTGTTGATAAAGGCCTTGTTATCCCGCTTGAAAAC
CCAGGGTTACCTAAATTTTCAAGAATGCCTTCCAATTATTTTATCTCGAT
GCCGGTTTCGCCTGTTAAAGGACCGATACCTAAATACCAATGTTGAATGG
AGAGTGAACGGATAAATAGTAATTAAAAACGATAATGTATGTGACGTGGT
TTCACTctcgaaattaaaaatttgtgtATCATAACGAATAATTTATTGTA
TTGTATTATCAAATTTTGTAACATattccaaatttttttataattcctCA
TAAAAACGATAATTCTCGaatgaataaaaatttctaaaaatca Run BLAST on NCBI protein sequence of TCONS_00045729-protein >TCONS_00045729-protein ID=TCONS_00045729-protein|Name=TCONS_00045729-protein|organism=Clytia hemisphaerica|type=polypeptide|length=271bp
MRPPSNTFENCVAVPLTFYRYQQPNEDMSLYTTNEEVESIIHKSSTLRNR
KRRKLTPTKKKCVPIWRPYLNENNNTDSTITNAHIINSPPKLKRYYDQSP
PSFIFRPVDIPILECTSVTEKHDDYDRRTPELVKMRLSPDCWSRYSFSPS
SSSVGSIDDVTVSPKLKHNRNGSLKRNEPYHGCASNPRLKRSKFNEEQLI
TLNDMFYKKTYLSLQERHDLAAKLQLSEEQVKNWFQNKRMKTKRDYIHAV
DXEKLVSKQTHENEKRLYPRC Run BLAST on NCBI transcript from alignment at scaffold_100:256803..258517- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00045729 ID=TCONS_00045729|Name=TCONS_00045729|organism=Clytia hemisphaerica|type=transcript|length=1715bp|location=Sequence derived from alignment at scaffold_100:256803..258517- (Clytia hemisphaerica)
CGATCATAGATAGATAGAATTATTTTTTAGATTACTGGTTTCAAATTTCC
TCTATGATTTATTCATTACTAAATCACACTTTGACCGGTGAGGACATATG
CTATAGAAAGATAGAGACTTGTTATCAAAGTGATCAGTATCAGATATAGT
TGAGAGATGCGACCACCTTCAAATACATTTGAGAATTGTGTTGCAGTACC
ATTAACCTTTTATCGCTACCAACAACCAAACGAAGATATGTCTTTATACA
CAACAAACGAAGAAGTCGAATCTATCATACACAAATCATCAACCCTACGC
AACCGTAAACGAAGAAAACTTACACCAACCAAAAAGAAATGTGTTCCAAT
ATGGCGGCCATACCTTAACGAGAATAACAACACAGATTCGACGATAACAA
ACGCTCACATCATTAACAGCCCACCGAAACTCAAACGCTATTACGACCAA
TCACCGCCAAGTTTCATATTCCGACCCGTCGATATCCCGATACTAGAATG
CACCTCCGTCACTGAAAAACACGACGACTACGACCGACGGACACCAGAGT
TGGTCAAAATGCGACTTTCGCCGGATTGTTGGTCCCGTTACTCTTTTTCT
CCGTCAAGTTCGTCTGTTGGGTCTATTGATGACGTCACAGTGTCCCCTAA
ACTGAAACATAACCGAAATGGTAAGCATAGTTATTCTTTTTTTCGATTTT
GTCGGATAGGCTCTATTTTGATCATTTCTTGTCTTACTTTCCGTTTTCAA
TCACCACTTAAAAAAGCGATTCGGAAGTCAACATTCATCCTTTCGGAAAA
TCAAGGGACTGGAATTTGAAAGTTTCGCTCTTTTTTGACGTTTTTTTAAC
TAATTTTCTAAATTTGGTCCAAATTACGAGAATTTATGTCCCTGTAAGTA
GGACTTTTAGACCCTGTTAGCGTTGTTTTTTATGGTTTTTCTACCCTTGA
ATATAAAAAAAAGAACTTTGTCTTGCACAGACTGGACATGTCTGACAGTA
TCCCCAGGGTGTATAGATGGTGATGTGACGGACACAGTCGCTTATTATCG
GCAATTAAATTAAAGATATTTGATTTTCTGTTTTTTATTCAGGTTCACTC
AAGCGTAACGAGCCATATCACGGATGCGCATCCAACCCTCGATTAAAACG
TTCGAAATTTAACGAAGAACAATTAATTACCCTTAATGACATGTTTTATA
AAAAGACTTATCTCTCATTACAAGAAAGACATGATTTGGCTGCCAAACTT
CAACTTAGTGAAGAACAAGTGAAAAATTGGTTTCAGAACAAACGCATGAA
AACGAAAAGAGACTATATCCACGCTGTTGATANTGAAAAATTGGTTTCAA
AACAAACGCATGAAAACGAAAAGAGATTATATCCACGCTGTTGATAAAGG
CCTTGTTATCCCGCTTGAAAACCCAGGGTTACCTAAATTTTCAAGAATGC
CTTCCAATTATTTTATCTCGATGCCGGTTTCGCCTGTTAAAGGACCGATA
CCTAAATACCAATGTTGAATGGAGAGTGAACGGATAAATAGTAATTAAAA
ACGATAATGTATGTGACGTGGTTTCACTCTCGAAATTAAAAATTTGTGTA
TCATAACGAATAATTTATTGTATTGTATTATCAAATTTTGTAACATATTC
CAAATTTTTTTATAATTCCTCATAAAAACGATAATTCTCGAATGAATAAA
AATTTCTAAAAATCA Coding sequence (CDS) from alignment at scaffold_100:256803..258517- >TCONS_00045729 ID=TCONS_00045729|Name=TCONS_00045729|organism=Clytia hemisphaerica|type=CDS|length=1632bp|location=Sequence derived from alignment at scaffold_100:256803..258517- (Clytia hemisphaerica)
GTTCACTCAAGCGTAACGAGCCATATCACGGATGCGCATCCAACCCTCGA
TTAAAACGTTCGAAATTTAACGAAGAACAATTAATTACCCTTAATGACAT
GTTTTATAAAAAGACTTATCTCTCATTACAAGAAAGACATGATTTGGCTG
CCAAACTTCAACTTAGTGAAGAACAAGTGAAAAATTGGTTTCAGAACAAA
CGCATGAAAACGAAAAGAGACTATATCCACGCTGTTGATANTGAAAAATT
GGTTTCAAAACAAACGCATGAAAACGAAAAGAGATTATATCCACGCTGTT
GAATGCGACCACCTTCAAATACATTTGAGAATTGTGTTGCAGTACCATTA
ACCTTTTATCGCTACCAACAACCAAACGAAGATATGTCTTTATACACAAC
AAACGAAGAAGTCGAATCTATCATACACAAATCATCAACCCTACGCAACC
GTAAACGAAGAAAACTTACACCAACCAAAAAGAAATGTGTTCCAATATGG
CGGCCATACCTTAACGAGAATAACAACACAGATTCGACGATAACAAACGC
TCACATCATTAACAGCCCACCGAAACTCAAACGCTATTACGACCAATCAC
CGCCAAGTTTCATATTCCGACCCGTCGATATCCCGATACTAGAATGCACC
TCCGTCACTGAAAAACACGACGACTACGACCGACGGACACCAGAGTTGGT
CAAAATGCGACTTTCGCCGGATTGTTGGTCCCGTTACTCTTTTTCTCCGT
CAAGTTCGTCTGTTGGGTCTATTGATGACGTCACAGTGTCCCCTAAACTG
AAACATAACCGAAATGGTTCACTCAAGCGTAACGAGCCATATCACGGATG
CGCATCCAACCCTCGATTAAAACGTTCGAAATTTAACGAAGAACAATTAA
TTACCCTTAATGACATGTTTTATAAAAAGACTTATCTCTCATTACAAGAA
AGACATGATTTGGCTGCCAAACTTCAACTTAGTGAAGAACAAGTGAAAAA
TTGGTTTCAGAACAAACGCATGAAAACGAAAAGAGACTATATCCACGCTG
TTGATANTGAAAAATTGGTTTCAAAACAAACGCATGAAAACGAAAAGAGA
TTATATCCACGCTGTTGAATGCGACCACCTTCAAATACATTTGAGAATTG
TGTTGCAGTACCATTAACCTTTTATCGCTACCAACAACCAAACGAAGATA
TGTCTTTATACACAACAAACGAAGAAGTCGAATCTATCATACACAAATCA
TCAACCCTACGCAACCGTAAACGAAGAAAACTTACACCAACCAAAAAGAA
ATGTGTTCCAATATGGCGGCCATACCTTAACGAGAATAACAACACAGATT
CGACGATAACAAACGCTCACATCATTAACAGCCCACCGAAACTCAAACGC
TATTACGACCAATCACCGCCAAGTTTCATATTCCGACCCGTCGATATCCC
GATACTAGAATGCACCTCCGTCACTGAAAAACACGACGACTACGACCGAC
GGACACCAGAGTTGGTCAAAATGCGACTTTCGCCGGATTGTTGGTCCCGT
TACTCTTTTTCTCCGTCAAGTTCGTCTGTTGGGTCTATTGATGACGTCAC
AGTGTCCCCTAAACTGAAACATAACCGAAATG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00045729-exon-scaffold_100-1575043694:257848..258517 | TCONS_00045729-exon-scaffold_100-1575043694:257848..258517 | Clytia hemisphaerica | exon |
| TCONS_00045729-exon-scaffold_100-1575043694:256803..257425 | TCONS_00045729-exon-scaffold_100-1575043694:256803..257425 | Clytia hemisphaerica | exon |
| TCONS_00045729-exon-scaffold_100-1510915933:257848..258517 | TCONS_00045729-exon-scaffold_100-1510915933:257848..258517 | Clytia hemisphaerica | exon |
| TCONS_00045729-exon-scaffold_100-1510915933:256803..257425 | TCONS_00045729-exon-scaffold_100-1510915933:256803..257425 | Clytia hemisphaerica | exon |
| TCONS_00045729-exon-scaffold_100-1491911889:257848..258517 | TCONS_00045729-exon-scaffold_100-1491911889:257848..258517 | Clytia hemisphaerica | exon |
| TCONS_00045729-exon-scaffold_100-1491911889:256803..257425 | TCONS_00045729-exon-scaffold_100-1491911889:256803..257425 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_100 | supercontig | scaffold_100:256803..258517 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003677 | DNA binding |
| GO:0043565 | sequence-specific DNA binding |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006355 | regulation of transcription, DNA-templated |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0006355 |
regulation of transcription, DNA-templated |
| molecular_function |
GO:0003677 |
DNA binding |
| molecular_function |
GO:0043565 |
sequence-specific DNA binding |
Blast
The following BLAST results are available for this feature:
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