TCONS_00045579 (transcript) - C. hemisphaerica

Overview
NameTCONS_00045579
Unique NameTCONS_00045579
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1681

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00045579 ID=TCONS_00045579|Name=TCONS_00045579|organism=Clytia hemisphaerica|type=transcript|length=1681bp
GTCAATTTTAAGTTAATCTGAGAACGAGATGAGCAACTTTAGCAAACCTC
AGTCGATTGCTGTTTATGAAGATTTACGAATTATCCACTATTATTCACTG
AGAGACCTCAGTTAACCGGTATGGAAAACTCATCTTCAAGCTATCTATCA
ATTTCAAAAGGTCCTAAAATACTTTTCTATCGTTTAGGACCGGAAAGAGG
AATCTGTGAATGTGGTTCTTGCAAATGTACAGATGCATACTTAGGTGATA
ATTGTGGTCAAGTCAACTGCACGATCGCTGAAAAGAATTGTCTAAACCCT
GACAATGGAGAAGTATGCAGCGGGAACGGTGTATGTGATTGCGAAAAATG
TAATTGCGAAGTCGGTTATATTGGGAAATATTGTCAAACTTGTGTGTCTT
GTGAAACAAAATGTGGGGAATACAAAGAATGCATACAATGCGTGCTGGAT
AACAATGGACCATTAGCCTCCAATAATTGCACCTCATGTGCATACCTTGA
TATACGATTGGTCGAATATGAAGTTGAAGGAACGTGTCGTTTTCAAATCG
ATGAGAATTGCCATTATGAATATGATTACACTCAAGGATTGAATGAAACA
GTCATCGTCAGGAAAGcaTGTGTGGTGGTGACGAATGAAAGCATTCCGAT
CCTTTACATCATTATCGGTATCGTGGCTGGTTTGATCGTGCTCGCTTTCC
TCCTCTTGATCATATGGAAGATTATCGTCACCGCTTACGATAACTACGAA
TATCAAAAGTTCTTGAAGCAAAGCAAACCAGAATTCGAGAGCAAGAACGA
AAATGCATTATACAAAGCTCCAAAGACAGTTTACGACAATCCAACGTATG
CACACAACAATCCATACGAATGATGTGTTTGAAAGATGGTTCACTGAATG
TACAATAAATCGATGGCTGGTCCATTGGATGTGTTTGGTCAATacattaa
aacatttttaaggccggtctccaatTACGCGCGCTTCGAActcacttttt
cgagcaaagcttccacgctattggtcaaaagaaaaatgaagcaactccat
tggcgcgatctgacgtaacggttgaaaaaagttgaaatgtgttcaacttt
tttttgagcgcttgctacatttttatgacgtaatattttttccaagcaaa
aaggattgaagccaaaagatgCCATCGCAGCGCGCACAAGTGGAGACCCG
CCtttagaaaagagaaaaatgtgCAAAAGGTAAAACAACTAATACGAAAT
CACCTGGATGGAGACACTCTTCGAGAAGAACGCCCTTGAGGGTGAATATt
aacagattttgaaaattatgaagGTTAATACTTTGGAAGTTAGCCCATTG
TTCAAACTTAGATTTTAGGAGATAAattccaattttcaaaattattttta
gtttgtcGATAATCTtactgtaatttttaaaaatcttatgTTTATAATGA
TgttatgtttattttttcagattttctacGTTGCATATACATTAAAGATA
AATCtaactttttaagaaaacattGTTGTCTCCATTAGCGAGTTTAAGCT
CGGGTTTGTGTATTTacattagcgagattatgtatctggaattctctacg
gctacggttgaagTGGCGAGGgtaatggcgagtaaggcaagtaatggcgg
gtgaaagcaagttcgatatttgacgtacggc
Run BLAST on NCBI

protein sequence of TCONS_00045579-protein

>TCONS_00045579-protein ID=TCONS_00045579-protein|Name=TCONS_00045579-protein|organism=Clytia hemisphaerica|type=polypeptide|length=250bp
MENSSSSYLSISKGPKILFYRLGPERGICECGSCKCTDAYLGDNCGQVNC
TIAEKNCLNPDNGEVCSGNGVCDCEKCNCEVGYIGKYCQTCVSCETKCGE
YKECIQCVLDNNGPLASNNCTSCAYLDIRLVEYEVEGTCRFQIDENCHYE
YDYTQGLNETVIVRKACVVVTNESIPILYIIIGIVAGLIVLAFLLLIIWK
IIVTAYDNYEYQKFLKQSKPEFESKNENALYKAPKTVYDNPTYAHNNPYE
Run BLAST on NCBI

transcript from alignment at scaffold_1:141912..146156-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00045579 ID=TCONS_00045579|Name=TCONS_00045579|organism=Clytia hemisphaerica|type=transcript|length=4245bp|location=Sequence derived from alignment at scaffold_1:141912..146156- (Clytia hemisphaerica)
GTCAATTTTAAGTTAATCTGAGAACGAGATGAGCAACTTTAGCAAACCTC
AGTCGATTGCTGTTTATGAAGATTTACGAATTATCCACTATTATTCACTG
AGAGACCTCAGTTAACCGGTATGGAAAACTCATCTTCAAGCTATCTATCA
ATTTCAAAAGGTCCTAAAATACTTTTCTATCGTTTAGGACCGGAAAGAGG
AATCTGTGAATGTGGTTCTTGCAAATGTACAGATGCATACTTAGGTGATA
ATTGTGGTCAAGTCAACTGCACGATCGCTGAAAAGAATTGTCTAAACCCT
GACAATGGAGTAAGTCATTCCACTTTTTTGAACTCCAGCCGATACACAAC
ATGTCTTTGACATTCACCATTGATGTTCTTTTGATGTTTTGTACCAGCCG
ACTATTTTTTTGGCTGTTTCGCATTGTTCTGCTCAGCTGTGGTACATTCA
CATACCGCACAGACCCTCATATCTAATTTTAGAATAGGAGTCGATCAATA
ATACAGCGGATTATATCTTTAACTCGAACAAGTTTGATAGTACCTTCGTT
AACGATGCCTTGCAAACCTTACTCTAGAGCTTGAAACTTCCTTAAATTGA
ACAAGTCTGTGTTCCCCGTGCCATGGACCCCGGTGAGCCATTTTGAGTGA
GGGGGCCAACATTTTTGAAACAAAATATCGCCCATCATGGTTGGGCGACG
AAGAAAATTTTTTCACTTTTTACACCCTCAAAATACCTTAAAACGATATC
TAATCGGGAATAATAATAGTTTTTATGCTTTGATTTGGTCTCAAACCAGC
TTAAAATAGTAACTCTCAAAAACGTATGACATGGTCTACCAAAAAGTGGG
GGGCCTATGCCGTGCGCCATCAAGATATTGAGACTCCACTGTACAATTTA
TGGATACTTGCAAATAAAAGGGCGTGTTTTTAATTGACTATAGTTTATGT
TCCTTCTTACAGGAAGTATGCAGCGGGAACGGTGTATGTGATTGCGAAAA
ATGTAATTGCGAAGTCGGTTATATTGGGAAATATTGTCAAACTTGTGTGG
TAAGTTCATAGTTAACCCTTTTGGAAAGAATCTCTTTTTCAAGCCCTAAA
GATCTTGAGGTCTAAATGCCACAAAAGGCAACTATTTTTTCTATTGCGTT
TTTACATGCCTCTAAATCAAGAAGAAATGCCCAAAGACCAAGTTTTCGTA
AAATATTGCAGTTTCTCTTGCCCATTTTTCTGACTCCATTCATTGGATGT
GAAAGTCATCTGTGAAATCCTTATTCCTTCTCCTTGCCTTGAAGCCTTGA
GCGATGATTATAAACTTCAATAGACCTTTTCATAAATTATGTTACGAACA
TCACTTGTCTCGTTTTGAAATTATTGCCATGGTGATTAACTCCCAGCTGA
TTTTATTAAAACTACTTCCTATTTATAAAAAAATCATTTAATGACCTAGC
CTAGGCTAATAATCATGGTAACCATGGTAGCTGTTTGAATACGAGGCAAG
TAATGTTCGTGACGTAACTTATGAAAAAGTCAATGCTGAGGGCATGAGTG
AGTATCACAAAGAACGAAATTATTCGAAGCACTGGAGTTTCTTTCAACCT
CTGCTAACTTTAAGATCGTGGACAATAACCGAATATCCAAATATCTCTTT
AGTCTTGTGAAACAAAATGTGGGGAATACAAAGAATGCATACAATGCGTG
CTGGATAACAATGGACCATTAGCCTCCAATAATTGCACCTCATGTGCATA
CCTTGATATACGATTGGTCGAATATGAAGTTGAAGGAACGTGTCGTTTTC
AAATCGATGAGAATTGCCATTATGAATATGATTACACTCAAGGATTGAAT
GAAACAGTCATCGTCAGGAAAGGTAAAATATTTGGATTTCTTAGGTATTG
TGGTAGCTTATATTGGTTTGCAAGGTTTTTTACCCACATAGACCAGAGTG
TTTGATAAGTTGAATTTTAACCAATTTAGCTGTTTCTATTTTTAACTTTA
TTTTTATAGCAATTTACAGCTGCTTACATATATTTGCTTTTTAAAATTTT
TGCTTGAAAAGGTTTTGGTTTATTTCGATATTCAAGTCAAGCTTTATCAA
ATCTCATAGAAAAAACTTCGAGTAAAGTATAAATAAACTTTCTTTTTCTT
TCAGCATGTGTGGTGGTGACGAATGAAAGCATTCCGATCCTTTACATCAT
TATCGGTATCGTGGCTGGTTTGATCGTGCTCGCTTTCCTCCTCTTGATCA
TATGGAAGATTATCGTCACCGCTTACGTAAGTAAAAATCTCTTTAAACCG
ATTTAGGTTTAAGAATCCAATTTTCCTATAACCTATATGCCTTATGAGAG
GCTCCACCAGCGGTTTTCGTGATTGTGTGATTGGCGTTTTTTCAAGTTCG
CGATTTCGTGATTTAAGATTTAAAATTGCGTGATTGCGTGATCGGAGGAA
TCAATCTGATCAACGTGATCGTGATAGAGTTACTTGAAAAGTGACTGGGG
GAGGGCTCTTATGACTAAGACCTTCACCTGCAATAATATGAGACGAAATG
GTAATCTAATTTGCGCGGTAAGGCGAGCGCATACTTACTCTATAGCAGAG
CCCGCGCCACGATTTTGAAAGTGAGGGGGCCAACAAAAATATAGTGACTA
AGGAGGCGTAACCATGGTTTGCGCCGACGGGCCGGAAAATTTTCGATTTT
GACCTGTCTTATTTGGCTAAAACAGCTTCCTTTTTGTTCTGATTTTCAGA
TTGTTTGTTTGTTTGTTTGTTTAAAACAAAAGAGTATAATTAGACTTATT
TAAGTGTTCATCTGTCCCCGTTTTGATTGGCACGCGCACGGAAAAGAAAA
AAATAATTAGGTGAAGAGAAATTTTTTATTTTGCTTTGCAAAAAATTGGG
GGGGGGGCATGGCCCCCCGGCCCCCCGGTGGCGCGGGCCCTGTATAGTTT
TTATATTGTGTAAAAACTATTTCTTTATTACTATGTGAATTGAAGTATAA
AATTGCAATGAATTCATTCTATGATCCTTTATACAGGATAACTACGAATA
TCAAAAGTTCTTGAAGCAAAGCAAACCAGAATTCGAGAGCAAGGTAAGAA
GAACTCGAAGTCAATTTTTAGAGTGTCAAAGGATAGGATAGTTCACCACG
GAAGTCAAATGTTGGCGGGAGTGTTGGTTTTGCGTACTATCCATTACATG
AAATGTTTGGAATGTGTTGGAAATTTTTATTGATATAGGCCCTCTATTTC
GTCAGTTCATAAAACTTATACCCCAAACCAAAGTCATCCCTATAAAGAAA
ACTTAAGTACAAGCGTTTCATTTATGAAACTTATCTTTTAATCTTATTTT
CTTTCATAGAACGAAAATGCATTATACAAAGCTCCAAAGACAGTTTACGA
CAATCCAACGTATGCACACAACAATCCATACGAATGATGTGTTTGAAAGA
TGGTTCACTGAATGTACAATAAATCGATGGCTGGTCCATTGGATGTGTTT
GGTCAATACATTAAAACATTTTTAAGGCCGGTCTCCAATTACGCGCGCTT
CGAACTCACTTTTTCGAGCAAAGCTTCCACGCTATTGGTCAAAAGAAAAA
TGAAGCAACTCCATTGGCGCGATCTGACGTAACGGTTGAAAAAAGTTGAA
ATGTGTTCAACTTTTTTTTGAGCGCTTGCTACATTTTTATGACGTAATAT
TTTTTCCAAGCAAAAAGGATTGAAGCCAAAAGATGCCATCGCAGCGCGCA
CAAGTGGAGACCCGCCTTTAGAAAAGAGAAAAATGTGCAAAAGGTAAAAC
AACTAATACGAAATCACCTGGATGGAGACACTCTTCGAGAAGAACGCCCT
TGAGGGTGAATATTAACAGATTTTGAAAATTATGAAGGTTAATACTTTGG
AAGTTAGCCCATTGTTCAAACTTAGATTTTAGGAGATAAATTCCAATTTT
CAAAATTATTTTTAGTTTGTCGATAATCTTACTGTAATTTTTAAAAATCT
TATGTTTATAATGATGTTATGTTTATTTTTTCAGATTTTCTACGTTGCAT
ATACATTAAAGATAAATCTAACTTTTTAAGAAAACATTGTTGTCTCCATT
AGCGAGTTTAAGCTCGGGTTTGTGTATTTACATTAGCGAGATTATGTATC
TGGAATTCTCTACGGCTACGGTTGAAGTGGCGAGGGTAATGGCGAGTAAG
GCAAGTAATGGCGGGTGAAAGCAAGTTCGATATTTGACGTACGGC

Coding sequence (CDS) from alignment at scaffold_1:141912..146156-

>TCONS_00045579 ID=TCONS_00045579|Name=TCONS_00045579|organism=Clytia hemisphaerica|type=CDS|length=4518bp|location=Sequence derived from alignment at scaffold_1:141912..146156- (Clytia hemisphaerica)
AACGAAAATGCATTATACAAAGCTCCAAAGACAGTTTACGACAATCCAAC
GTATGCACACAACAATCCATACGAATGAGATAACTACGAATATCAAAAGT
TCTTGAAGCAAAGCAAACCAGAATTCGAGAGCAAGCATGTGTGGTGGTGA
CGAATGAAAGCATTCCGATCCTTTACATCATTATCGGTATCGTGGCTGGT
TTGATCGTGCTCGCTTTCCTCCTCTTGATCATATGGAAGATTATCGTCAC
CGCTTACTCTTGTGAAACAAAATGTGGGGAATACAAAGAATGCATACAAT
GCGTGCTGGATAACAATGGACCATTAGCCTCCAATAATTGCACCTCATGT
GCATACCTTGATATACGATTGGTCGAATATGAAGTTGAAGGAACGTGTCG
TTTTCAAATCGATGAGAATTGCCATTATGAATATGATTACACTCAAGGAT
TGAATGAAACAGTCATCGTCAGGAAAGGAAGTATGCAGCGGGAACGGTGT
ATGTGATTGCGAAAAATGTAATTGCGAAGTCGGTTATATTGGGAAATATT
GTCAAACTTGTGTGATGGAAAACTCATCTTCAAGCTATCTATCAATTTCA
AAAGGTCCTAAAATACTTTTCTATCGTTTAGGACCGGAAAGAGGAATCTG
TGAATGTGGTTCTTGCAAATGTACAGATGCATACTTAGGTGATAATTGTG
GTCAAGTCAACTGCACGATCGCTGAAAAGAATTGTCTAAACCCTGACAAT
GGAAACGAAAATGCATTATACAAAGCTCCAAAGACAGTTTACGACAATCC
AACGTATGCACACAACAATCCATACGAATGAGATAACTACGAATATCAAA
AGTTCTTGAAGCAAAGCAAACCAGAATTCGAGAGCAAGCATGTGTGGTGG
TGACGAATGAAAGCATTCCGATCCTTTACATCATTATCGGTATCGTGGCT
GGTTTGATCGTGCTCGCTTTCCTCCTCTTGATCATATGGAAGATTATCGT
CACCGCTTACTCTTGTGAAACAAAATGTGGGGAATACAAAGAATGCATAC
AATGCGTGCTGGATAACAATGGACCATTAGCCTCCAATAATTGCACCTCA
TGTGCATACCTTGATATACGATTGGTCGAATATGAAGTTGAAGGAACGTG
TCGTTTTCAAATCGATGAGAATTGCCATTATGAATATGATTACACTCAAG
GATTGAATGAAACAGTCATCGTCAGGAAAGGAAGTATGCAGCGGGAACGG
TGTATGTGATTGCGAAAAATGTAATTGCGAAGTCGGTTATATTGGGAAAT
ATTGTCAAACTTGTGTGATGGAAAACTCATCTTCAAGCTATCTATCAATT
TCAAAAGGTCCTAAAATACTTTTCTATCGTTTAGGACCGGAAAGAGGAAT
CTGTGAATGTGGTTCTTGCAAATGTACAGATGCATACTTAGGTGATAATT
GTGGTCAAGTCAACTGCACGATCGCTGAAAAGAATTGTCTAAACCCTGAC
AATGGAAACGAAAATGCATTATACAAAGCTCCAAAGACAGTTTACGACAA
TCCAACGTATGCACACAACAATCCATACGAATGAGATAACTACGAATATC
AAAAGTTCTTGAAGCAAAGCAAACCAGAATTCGAGAGCAAGCATGTGTGG
TGGTGACGAATGAAAGCATTCCGATCCTTTACATCATTATCGGTATCGTG
GCTGGTTTGATCGTGCTCGCTTTCCTCCTCTTGATCATATGGAAGATTAT
CGTCACCGCTTACTCTTGTGAAACAAAATGTGGGGAATACAAAGAATGCA
TACAATGCGTGCTGGATAACAATGGACCATTAGCCTCCAATAATTGCACC
TCATGTGCATACCTTGATATACGATTGGTCGAATATGAAGTTGAAGGAAC
GTGTCGTTTTCAAATCGATGAGAATTGCCATTATGAATATGATTACACTC
AAGGATTGAATGAAACAGTCATCGTCAGGAAAGGAAGTATGCAGCGGGAA
CGGTGTATGTGATTGCGAAAAATGTAATTGCGAAGTCGGTTATATTGGGA
AATATTGTCAAACTTGTGTGATGGAAAACTCATCTTCAAGCTATCTATCA
ATTTCAAAAGGTCCTAAAATACTTTTCTATCGTTTAGGACCGGAAAGAGG
AATCTGTGAATGTGGTTCTTGCAAATGTACAGATGCATACTTAGGTGATA
ATTGTGGTCAAGTCAACTGCACGATCGCTGAAAAGAATTGTCTAAACCCT
GACAATGGAAACGAAAATGCATTATACAAAGCTCCAAAGACAGTTTACGA
CAATCCAACGTATGCACACAACAATCCATACGAATGAGATAACTACGAAT
ATCAAAAGTTCTTGAAGCAAAGCAAACCAGAATTCGAGAGCAAGCATGTG
TGGTGGTGACGAATGAAAGCATTCCGATCCTTTACATCATTATCGGTATC
GTGGCTGGTTTGATCGTGCTCGCTTTCCTCCTCTTGATCATATGGAAGAT
TATCGTCACCGCTTACTCTTGTGAAACAAAATGTGGGGAATACAAAGAAT
GCATACAATGCGTGCTGGATAACAATGGACCATTAGCCTCCAATAATTGC
ACCTCATGTGCATACCTTGATATACGATTGGTCGAATATGAAGTTGAAGG
AACGTGTCGTTTTCAAATCGATGAGAATTGCCATTATGAATATGATTACA
CTCAAGGATTGAATGAAACAGTCATCGTCAGGAAAGGAAGTATGCAGCGG
GAACGGTGTATGTGATTGCGAAAAATGTAATTGCGAAGTCGGTTATATTG
GGAAATATTGTCAAACTTGTGTGATGGAAAACTCATCTTCAAGCTATCTA
TCAATTTCAAAAGGTCCTAAAATACTTTTCTATCGTTTAGGACCGGAAAG
AGGAATCTGTGAATGTGGTTCTTGCAAATGTACAGATGCATACTTAGGTG
ATAATTGTGGTCAAGTCAACTGCACGATCGCTGAAAAGAATTGTCTAAAC
CCTGACAATGGAAACGAAAATGCATTATACAAAGCTCCAAAGACAGTTTA
CGACAATCCAACGTATGCACACAACAATCCATACGAATGAGATAACTACG
AATATCAAAAGTTCTTGAAGCAAAGCAAACCAGAATTCGAGAGCAAGCAT
GTGTGGTGGTGACGAATGAAAGCATTCCGATCCTTTACATCATTATCGGT
ATCGTGGCTGGTTTGATCGTGCTCGCTTTCCTCCTCTTGATCATATGGAA
GATTATCGTCACCGCTTACTCTTGTGAAACAAAATGTGGGGAATACAAAG
AATGCATACAATGCGTGCTGGATAACAATGGACCATTAGCCTCCAATAAT
TGCACCTCATGTGCATACCTTGATATACGATTGGTCGAATATGAAGTTGA
AGGAACGTGTCGTTTTCAAATCGATGAGAATTGCCATTATGAATATGATT
ACACTCAAGGATTGAATGAAACAGTCATCGTCAGGAAAGGAAGTATGCAG
CGGGAACGGTGTATGTGATTGCGAAAAATGTAATTGCGAAGTCGGTTATA
TTGGGAAATATTGTCAAACTTGTGTGATGGAAAACTCATCTTCAAGCTAT
CTATCAATTTCAAAAGGTCCTAAAATACTTTTCTATCGTTTAGGACCGGA
AAGAGGAATCTGTGAATGTGGTTCTTGCAAATGTACAGATGCATACTTAG
GTGATAATTGTGGTCAAGTCAACTGCACGATCGCTGAAAAGAATTGTCTA
AACCCTGACAATGGAAACGAAAATGCATTATACAAAGCTCCAAAGACAGT
TTACGACAATCCAACGTATGCACACAACAATCCATACGAATGAGATAACT
ACGAATATCAAAAGTTCTTGAAGCAAAGCAAACCAGAATTCGAGAGCAAG
CATGTGTGGTGGTGACGAATGAAAGCATTCCGATCCTTTACATCATTATC
GGTATCGTGGCTGGTTTGATCGTGCTCGCTTTCCTCCTCTTGATCATATG
GAAGATTATCGTCACCGCTTACTCTTGTGAAACAAAATGTGGGGAATACA
AAGAATGCATACAATGCGTGCTGGATAACAATGGACCATTAGCCTCCAAT
AATTGCACCTCATGTGCATACCTTGATATACGATTGGTCGAATATGAAGT
TGAAGGAACGTGTCGTTTTCAAATCGATGAGAATTGCCATTATGAATATG
ATTACACTCAAGGATTGAATGAAACAGTCATCGTCAGGAAAGGAAGTATG
CAGCGGGAACGGTGTATGTGATTGCGAAAAATGTAATTGCGAAGTCGGTT
ATATTGGGAAATATTGTCAAACTTGTGTGATGGAAAACTCATCTTCAAGC
TATCTATCAATTTCAAAAGGTCCTAAAATACTTTTCTATCGTTTAGGACC
GGAAAGAGGAATCTGTGAATGTGGTTCTTGCAAATGTACAGATGCATACT
TAGGTGATAATTGTGGTCAAGTCAACTGCACGATCGCTGAAAAGAATTGT
CTAAACCCTGACAATGGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_029142XLOC_029142Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00045579-proteinTCONS_00045579-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00045579-exon-scaffold_1-1575043694:145848..146156TCONS_00045579-exon-scaffold_1-1575043694:145848..146156Clytia hemisphaericaexon
TCONS_00045579-exon-scaffold_1-1575043694:145108..145194TCONS_00045579-exon-scaffold_1-1575043694:145108..145194Clytia hemisphaericaexon
TCONS_00045579-exon-scaffold_1-1575043694:144285..144504TCONS_00045579-exon-scaffold_1-1575043694:144285..144504Clytia hemisphaericaexon
TCONS_00045579-exon-scaffold_1-1575043694:143881..144002TCONS_00045579-exon-scaffold_1-1575043694:143881..144002Clytia hemisphaericaexon
TCONS_00045579-exon-scaffold_1-1575043694:143064..143120TCONS_00045579-exon-scaffold_1-1575043694:143064..143120Clytia hemisphaericaexon
TCONS_00045579-exon-scaffold_1-1575043694:141912..142797TCONS_00045579-exon-scaffold_1-1575043694:141912..142797Clytia hemisphaericaexon
TCONS_00045579-exon-scaffold_1-1510915933:145848..146156TCONS_00045579-exon-scaffold_1-1510915933:145848..146156Clytia hemisphaericaexon
TCONS_00045579-exon-scaffold_1-1510915933:145108..145194TCONS_00045579-exon-scaffold_1-1510915933:145108..145194Clytia hemisphaericaexon
TCONS_00045579-exon-scaffold_1-1510915933:144285..144504TCONS_00045579-exon-scaffold_1-1510915933:144285..144504Clytia hemisphaericaexon
TCONS_00045579-exon-scaffold_1-1510915933:143881..144002TCONS_00045579-exon-scaffold_1-1510915933:143881..144002Clytia hemisphaericaexon
TCONS_00045579-exon-scaffold_1-1510915933:143064..143120TCONS_00045579-exon-scaffold_1-1510915933:143064..143120Clytia hemisphaericaexon
TCONS_00045579-exon-scaffold_1-1510915933:141912..142797TCONS_00045579-exon-scaffold_1-1510915933:141912..142797Clytia hemisphaericaexon
TCONS_00045579-exon-scaffold_1-1491911889:145848..146156TCONS_00045579-exon-scaffold_1-1491911889:145848..146156Clytia hemisphaericaexon
TCONS_00045579-exon-scaffold_1-1491911889:145108..145194TCONS_00045579-exon-scaffold_1-1491911889:145108..145194Clytia hemisphaericaexon
TCONS_00045579-exon-scaffold_1-1491911889:144285..144504TCONS_00045579-exon-scaffold_1-1491911889:144285..144504Clytia hemisphaericaexon
TCONS_00045579-exon-scaffold_1-1491911889:143881..144002TCONS_00045579-exon-scaffold_1-1491911889:143881..144002Clytia hemisphaericaexon
TCONS_00045579-exon-scaffold_1-1491911889:143064..143120TCONS_00045579-exon-scaffold_1-1491911889:143064..143120Clytia hemisphaericaexon
TCONS_00045579-exon-scaffold_1-1491911889:141912..142797TCONS_00045579-exon-scaffold_1-1491911889:141912..142797Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_1supercontigscaffold_1:141912..146156 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.09746	0.893294	1.42795	1.17184	2.69854	1.94326	1.80207	2.08309	2.94824	3.83903	5.39249	3.15843	13.4748	13.449	21.4385	20.4641	11.2544	15.0298	17.8296	20.4842	5.25837	5.97729	2.59697	3.74032	4.4784	4.94068	10.6269	5.67398	2.75622	2.33576
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR015812Integrin_bsu
IPR012896Integrin_bsu_tail
IPR014836Integrin_bsu_cyt_dom
Blast
[Close]
BLAST of TCONS_00045579 vs. Swiss-Prot (Human)
Match: ITB2 (Integrin beta-2 OS=Homo sapiens GN=ITGB2 PE=1 SV=2)

HSP 1 Score: 108.997 bits (271), Expect = 8.125e-25
Identity = 81/230 (35.22%), Postives = 116/230 (50.43%), Query Frame = 1 
Query:  187 GPERGICECGSCKCTDAYLGDNCGQVNCTIAEKNCLNPDNGEVCSGNGVCDCEKCNCEVGYIGKYCQTCVSCETKCGEYKECIQCVLDNNGPLASNNCTSCAYLDIRLVEYEVEG-TCRFQIDENCHYEYDYTQ--GLNETVIV---RKACVVVTNESIPILYXXXXXXXXXXXXXFLLLIIWKIIVTAYDNYEYQKFLKQSKPEFESKNENALYKAPKTVYDNPTYAHN 858
            GP RG+C CG C+C   + G  C    C    + CLNP   E CSG G C C  C C  GY    CQ C  C + CG+Y  C +C+    GP   N   +C  L  +L    V+G TC+ +  E C   Y   Q  G++  +I     + CV   N    I  I+ G VAG++++  LLL+IWK ++   D  EY++F K+ K + +  N+N L+K+  T   NP +A +
Sbjct:  551 GPGRGLCFCGKCRCHPGFEGSAC---QCERTTEGCLNPRRVE-CSGRGRCRCNVCECHSGYQLPLCQECPGCPSPCGKYISCAECLKFEKGPFGKNCSAACPGL--QLSNNPVKGRTCKERDSEGCWVAYTLEQQDGMDRYLIYVDESRECVAGPN----IAAIVGGTVAGIVLIGILLLVIWKALIHLSDLREYRRFEKE-KLKSQWNNDNPLFKSATTTVMNPKFAES 769
The following BLAST results are available for this feature:
BLAST of TCONS_00045579 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
ITB28.125e-2535.22Integrin beta-2 OS=Homo sapiens GN=ITGB2 PE=1 SV=2[more]
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