TCONS_00045579-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00045579-protein
Unique NameTCONS_00045579-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length250

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00045579-protein ID=TCONS_00045579-protein|Name=TCONS_00045579-protein|organism=Clytia hemisphaerica|type=polypeptide|length=250bp
MENSSSSYLSISKGPKILFYRLGPERGICECGSCKCTDAYLGDNCGQVNC
TIAEKNCLNPDNGEVCSGNGVCDCEKCNCEVGYIGKYCQTCVSCETKCGE
YKECIQCVLDNNGPLASNNCTSCAYLDIRLVEYEVEGTCRFQIDENCHYE
YDYTQGLNETVIVRKACVVVTNESIPILYIIIGIVAGLIVLAFLLLIIWK
IIVTAYDNYEYQKFLKQSKPEFESKNENALYKAPKTVYDNPTYAHNNPYE
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_029142XLOC_029142Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00045579TCONS_00045579Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR015812Integrin_bsu
IPR012896Integrin_bsu_tail
IPR014836Integrin_bsu_cyt_dom
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR015812Integrin beta subunitPRINTSPR01186INTEGRINBcoord: 175..192
score: 23.66
coord: 66..79
score: 56.61
coord: 192..210
score: 37.23
coord: 227..237
score: 39.06
IPR015812Integrin beta subunitPROSITEPS00243INTEGRIN_BETAcoord: 66..79
IPR012896Integrin beta subunit, tailSMARTSM01242Integrin_B_tail_2coord: 98..172
e-value: 5.9E-6
score: 35.8
IPR012896Integrin beta subunit, tailPFAMPF07965Integrin_B_tailcoord: 98..164
e-value: 1.5E-7
score: 31.7
IPR014836Integrin beta subunit, cytoplasmic domainSMARTSM01241Integrin_b_cyt_2coord: 200..246
e-value: 4.4E-6
score: 36.2
IPR014836Integrin beta subunit, cytoplasmic domainPFAMPF08725Integrin_b_cytcoord: 200..243
e-value: 4.2E-9
score: 35.8
NoneNo IPR availableGENE3D2.60.40.1510coord: 50..89
e-value: 6.7E-6
score: 26.0
NoneNo IPR availableGENE3D2.10.25.10coord: 21..49
e-value: 0.019
score: 14.7
NoneNo IPR availableGENE3D1.20.5.100coord: 171..244
e-value: 2.0E-19
score: 68.4

Blast
[Close]
BLAST of TCONS_00045579-protein vs. Swiss-Prot (Human)
Match: ITB2 (Integrin beta-2 OS=Homo sapiens GN=ITGB2 PE=1 SV=2)

HSP 1 Score: 127.487 bits (319), Expect = 1.942e-33
Identity = 81/230 (35.22%), Postives = 116/230 (50.43%), Query Frame = 0 
Query:   23 GPERGICECGSCKCTDAYLGDNCGQVNCTIAEKNCLNPDNGEVCSGNGVCDCEKCNCEVGYIGKYCQTCVSCETKCGEYKECIQCVLDNNGPLASNNCTSCAYLDIRLVEYEVEG-TCRFQIDENCHYEYDYTQ--GLNETVIV---RKACVVVTNESIPILYIIIGIVAGLIVLAFLLLIIWKIIVTAYDNYEYQKFLKQSKPEFESKNENALYKAPKTVYDNPTYAHN 246
            GP RG+C CG C+C   + G  C    C    + CLNP   E CSG G C C  C C  GY    CQ C  C + CG+Y  C +C+    GP   N   +C  L  +L    V+G TC+ +  E C   Y   Q  G++  +I     + CV   N    I  I+ G VAG++++  LLL+IWK ++   D  EY++F K+ K + +  N+N L+K+  T   NP +A +
Sbjct:  551 GPGRGLCFCGKCRCHPGFEGSAC---QCERTTEGCLNPRRVE-CSGRGRCRCNVCECHSGYQLPLCQECPGCPSPCGKYISCAECLKFEKGPFGKNCSAACPGL--QLSNNPVKGRTCKERDSEGCWVAYTLEQQDGMDRYLIYVDESRECVAGPN----IAAIVGGTVAGIVLIGILLLVIWKALIHLSDLREYRRFEKE-KLKSQWNNDNPLFKSATTTVMNPKFAES 769
The following BLAST results are available for this feature:
BLAST of TCONS_00045579-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
ITB21.942e-3335.22Integrin beta-2 OS=Homo sapiens GN=ITGB2 PE=1 SV=2[more]
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