TCONS_00045568 (transcript) - C. hemisphaerica

Overview
NameTCONS_00045568
Unique NameTCONS_00045568
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1175

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00045568 ID=TCONS_00045568|Name=TCONS_00045568|organism=Clytia hemisphaerica|type=transcript|length=1175bp
ACACGACAATCTGAAACATACTGACGGAGCCAGGCAGAGCATAGTAAATA
ATCAAGTCTTTTTGGTTCCAACAACAGCAAAAGTATCTTAAAGTTTTAGA
CTTATGTATTAATGGTTATCCTCCCTGGCGAAAGTAtggcaaattacgca
tgcgcattATATGGACTGGAATTGGAGCATCCACTATATgacGGTGCTGA
AGCTTTTAAAGACAGAAATCTACACATCACAATCAACATGTTTGGAGACC
TTAAAAGTGCTGCTGGTGTCAAAGAATTAAATTGCTTTTTAGCCGATAAG
AGTTATATTGAAGGATACATTCCTTCCCAAGCTGATGTCACTGTCTTTGC
TGCTCTTGCTTCAGCCCCTGGAACAGAGTTTGCCCATGCTTTGAGATGGT
ACAATCACATTCGCTCTTACTCTTGTGATGAAAAGAAAAGCTTTGCAAGC
GCTACTGGTGATCATGGTGTGAGAGGAGCTGAACAAGCTAAGAAAGACGA
CGATGATGAATTGGATTTGTTTGGGTCTGACTCTGACGAAGAAGAAGAGa
ctgaagaagaaaagaaagtcaGAGAAGAACGACTTGCCAAATATGCTGCC
AAAAAAGCCAACAAGAAAACTGTAATCGCTAAATCAAGTCTTTTAATCGA
CGTCAAACCATGGGATGATGAAACTGACATGAAAGCTCTAGAAGCAGAAG
TTCGAAAGATCGAAGCCGAAGGGCTTTTGTGGGGTGCAAGCAAACTCATA
CCTGTCGGATACGGAATCAAGAAACTTCAGATCAACGCCGTCATCGTAGA
CGATAAGATTTCGACGGACTGGTTAGAAGAGAAAATTACGGAAGACGAAG
AGCGTGTCCAATCCATGGATATCGCTGCTTTCAACAAGATTTAAATTCTC
ATTCACCACAGCTTTATCGTTATTTCTTATCTTTATGTACATCTCGAATT
TTGTCAATGAATATTAACAAACTGCTATTTCTATGTCAATTCGactttaa
ttatttttattatccGCTATTTTAAAGGTATTCAGAATCATTTAAAAATC
CTTCAAGTCTTCCCCTTTTTAGGCATCTCAGCGTCGATCGACTTTGGGCT
GTGTGCAGTAATTGCTTTTGATAGCTTCCGAGTTCTGCCATTTTCTGTTT
GTATGAGTAAACAAACACCCACAGG
Run BLAST on NCBI

protein sequence of TCONS_00045568-protein

>TCONS_00045568-protein ID=TCONS_00045568-protein|Name=TCONS_00045568-protein|organism=Clytia hemisphaerica|type=polypeptide|length=260bp
MVILPGESMANYACALYGLELEHPLYDGAEAFKDRNLHITINMFGDLKSA
AGVKELNCFLADKSYIEGYIPSQADVTVFAALASAPGTEFAHALRWYNHI
RSYSCDEKKSFASATGDHGVRGAEQAKKDDDDELDLFGSDSDEEEETEEE
KKVREERLAKYAAKKANKKTVIAKSSLLIDVKPWDDETDMKALEAEVRKI
EAEGLLWGASKLIPVGYGIKKLQINAVIVDDKISTDWLEEKITEDEERVQ
SMDIAAFNKI
Run BLAST on NCBI

transcript from alignment at scaffold_1:164966..171752+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00045568 ID=TCONS_00045568|Name=TCONS_00045568|organism=Clytia hemisphaerica|type=transcript|length=6787bp|location=Sequence derived from alignment at scaffold_1:164966..171752+ (Clytia hemisphaerica)
ACACGACAATCTGAAACATACTGACGGAGCCAGGCAGAGCATAGTAAATA
ATCAAGTCTTTTTGGTTCCAACAACAGCAAAAGTATCTTAAAGTTTTAGA
CTTATGTATTAATGGTTATCCTCCCTGGCGAAAGTAtggcaaattacgca
tgcgcattATATGGACTGGAATTGGAGCATCCACTATATgacgtgagtat
cacagctcaaataaatatcaatattttatctgatgaaaacttgacctctg
gtACCCAGGGTAATGTGATGACagttattAAATTTGGCCTCGGTTTCCTC
CACGTTCTCACGGCTCTTGTTCTcgttttattttttcgttctttcGTTCT
TTCTAGCGCTGGCGAGCAGCTAGAAatctttattttgaatattttttatg
aatggtCACAcagtttttcttattttcatggCTCCCGTAAGAGGGTTTTT
CTAAGCCGTGTGACCATTTTAGAGGCACTCGTGGTATTTTTGGTTTCTCA
CCGAAATATCAATCTTTTCACTTCTACTTTCAAAAGGGTGCTGAAGCTTT
TAAAGACAGAAATCTACACATCACAATCAACATGTTTGGAGACCTTAAAA
GTGCTGCTGGTGTCAAAGAATTAAATTGCTTTTTAGCCGATAAGAGTTAT
ATTGAAGGGTAATAAATGATTTTATTTCCTTGTAGTTAAAAAGTAATAAT
AATACTTGGAACAGAGGACGGACGACGTGAGGCTAAAAGGGTTGAAGATA
TATATatacttctttccatcttaactcatattgagctGCTTTCTTCCTTA
TagtcattttagatcactagttttacatTGACGGACTTCCATGTCattac
atttttcttttcaactcCAACCTGATCGATTTTCTGtactgtgaatgttc
attctagatttttgttgtaatttgtattgtctttttgttttgtgagtttt
gtctttagtgtttccattttgagtagttcaaggttttatacttctagact
atatatatgtgaagaaataagtatttctgtccaactatatatCCTGAGCC
TTAGCTTTATTAGctactgtgaagtcgggtaactttttttttttatgtac
AATTGACAGTTGAATTAGTGCGATTGTTTTGCCTGATTCTTTTTAGCCAG
TCAGCGTGTGCAAAAGCTCAATTAATATTTATtccaaatctggatgaaaa
agatcaaaacactAACCTGTGCAGATTCTCTTACAGAGCCAAAGCCTTTA
AAGTAAAAACCTGTCATGTGAAGAGGTCAAAATTTGCTCTGAGATGAGAG
ATTTTGAGACACTTAACTCAATAACTACTTGTTATATATATTAAAGAAAG
CCAGGAattaaaagttttgtaaaaatggcTGCATTTAAAAGACTGATGTC
ACCTcgacaatcagtgacaaaatacttggcacaaaagggaaattcaccgg
ggtgttttaaaaccacaatcgatttgcaagtgctctaaagtaggtttgaa
gggcagagttttaactctgagttttaacgctagacttaagacttaggacc
ttaggatctgagaatccaaaagttcaaaaatggtttagtagggcttgaaa
tatagcctagaaaccaataaatccctctaagatcgaaataatcaatgaaa
tcaagttgaaggcctgaaattgacattctcactcgaacttcaattttcaa
aaaatggtaaattagctaAAAGTGCCgatatattatggcactgattgtag
attcataacaaattgaaatatgtgattttgtcaaaatatgtCATCAGTTT
AAAAAGTTATACCAGTTTTAAACATCAAGACATTAGACACCACTGCAtga
tttataaagttttggttcttgttttcaaattacTTGTTACTTCTGTGTAT
CATAACGTGATTATCCATGCTTTTTTTATCTCAGATACATTCCTTCCCAA
GCTGATGTCACTGTCTTTGCTGCTCTTGCTTCAGCCCCTGGAACAGAGTT
TGCCCATGCTTTGAGATGGTACAATCACATTCGCTCTTACTCTTGTGATG
AAAAGAAAAGGTAATTTTTAGTTAAAATAGATACAAGCTTTTGATGGGAC
CAATAACGAACTTTCAAGGACAATTTTTCTTTCATAGCAGGGCCTGAAAT
ATATAACAATATTTTGATGGTGGAATCTATTTTGGTCGGACATTTCATTG
ATTGGGTCAGActatgtccgatgtccgaccatTATTTCAGGCCCTGCATA
CTGTTTTTTGGCTTCTTAAATCAAGGAATGTTCATCTTATCTATTCCATA
TGAGAGAAAATAAACTTTCTTTACCTTTTTTATATTTAGCTTTGCAAGCG
CTACTGGTGATCATGGTGTGAGAGGAGCTGAACAAGCTAAGAAAGACGAC
GATGATGAATTGGATTTGTTTGGGTCTGACTCTGACGAAGAAGAAGAGGT
ATGGTTCTGAGtggtttttgaattttctttctggATGATGTAACCAGata
aatttttgtatatttaccaTTATTTTAGTGTTGAAAGCTTGATCTGCGTT
ACAAAGCATTCCTGTCATATTCTTGATATTTCTTTAGATGGTAAAAATCA
GTTTATGGGAAAAAAGTTCAAAGCTTTAAATGAACTAAGGAACTCAACAG
TCTTTAACTGTTAAATTTCTACCTCTAGCtgatattaaaattcaaaattt
tagctttgaaTAAACCAAGAAACCCAAGAGTACTTCAATTCTTACTTACT
GAAACTATCATTATTCCCAAATCAATTCATAGactgaagaagaaaagaaa
gtcaGAGAAGAACGACTTGCCAAATATGCTGCCAAAAAAGCCAACAAGAG
TAAGTTTACTGAACATGGCAAACCATCATGCTAAATTTCCATTCCACTTT
TGANtaaaagtgatttttgaagccggaactttctaaaaatcgccggaaca
gcctattttcgccggaaaaacggtatttcttgaatttcttgagctttact
ttatattttttcatgaaattttgcacactggcGCCATATGATAATatcaa
aatgtgacggagcccgattttcgaaaaacatttttttccggccgaaaatg
tcagaaatatgccggaaaaaccggttttttgacattttctcgaattttca
ttttcatttttttctgattttttgttgaaagatgcgtattcgcaatgctc
aaaacatggccgagttcgatttttgagaaaaaattttttccggttgaaaa
ttccggaaatctccgtttttgcatattttcattggattttttccttatat
ttctatgtttttcacacaaaaacattattgataacaatgctcaccatcaa
gcatgattcaatNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNaaacgctatgttttctgactgattttttttcatttttctccttgc
attgctatctaactttcatcatcaggtaggtccattcagcatctagcttg
ttataTTTAGCTTTGCAAGCGCTACTGGTGATCATGGTGTGAGAGGAGCT
GCACAAGCTAAGAAAGACGACGATGATGAATTGGATTTGTTTGGGTCTGA
CTCTGACGAAGAAGAAGAGGTAtggttttgagtggtttttgaattttctt
tctggATGATGTAACCAGataaatttttgtatatttaccaTTATTTTAGT
GTTGAAAGCTTGATCTGCGTTATAAAGCATTCTTGTCATCTTCTTGATAT
TTCTTTGGATGGTAAAAATCAGTTTAtgggaaaaaagttccaaagcTTTA
AATGAACTAAGGAACTCAACAGTCTTTAACTGTTAAATTTCTACCTCTAG
CTGATattataattcaaaattttagctttgaaTAAACCAAGAAACCCAAG
AGTACTTCAATTCTTACTTACTGAAACTATCATTATTCCCAAATCAATTC
ATAGactgaagaagaaaagaaagtcaGAGAAGAACGACTTGCCAAATATG
CTGCCAAAAAAGCCAACAAGAGTAAGTTTACTGAACATGGCAAACCATCA
TGCTAAATTTCCATTCCACTTTTGAGTTGTTTTTTATGCGGCTGTTCTTT
ATTTTTACGTACAGCTTTTGGTATATGCCTTAAATTGATTCAAATTATAA
TTTTCCATTTAGAAACTGTAATCGCTAAATCAAGTCTTTTAATCGACGTC
AAACCATGGGATGATGAAACTGGTAAGTAACCCATACagtattttatgaa
aatattagctaataaaatttgattttattagATGTTTTTTCCTAGGAATA
ATTGTTttgtgttttaattttcaatttttttttaattgctttaAACACAA
AAAACTTGCTTAATGTATGAATTTTGTATGTTTTTAGACATGAAAGCTCT
AGAAGCAGAAGTTCGAAAGATCGAAGCCGAAGGGCTTTTGTGGGGTGCAA
GTGAGTATCTTTTTCTTCTTGATATGTAATTATAAACGTTAATTGTTCTT
GAAGATTTCCAATAACTTATTTCTTAACCCTTTGCATCACCTTAAAtgag
aaaaatatataaattacTGACCAAAacctaaaattggaaaaatgccCAAT
TGGAAAAATGCCCAATTTGAATTGATCAACATGATAGAATAGAATCCAAA
ATGGTGAACACTGAAAACAGAAAAATACAGAAAACATGTGAGGGGATGCC
AAAAATGATGGAAAGACACTGAACTTGGCCTTAAGGCTTAGCCGTTACAC
AACTGCACCCTATTGAATTGAAATGTGAATTTGTATCTTTTTGTGAAATA
TTACAAACTATTTCCCTCAAAATTTACGAGGCTACTCCATGTAACACAAA
TTTGCCTAAATCATCCTTAGGTTACTGTTTAATTAGAAAGTATTAAGTAT
TCATGACAAAAGCTTCCAGCCAAAATTCCCAACATCTACCACAGGTCAAA
AGGTCAATGTCACTTGACAATCTTcatctaccttaagggaagaaattttt
gcggaatttaatttcgcgtaagagagtttcaaaatggcaaatttcgcgga
agttaatttcgcgaatgagctgaattcaaaagtttcacggaatttaattt
tgcgattgagaaatttcaaaagaattttttttacagagaaagtgtttttc
ataattttcatcaaaattcgtgaaattaaattccgtgaaaatttcttccg
tgaaaatttcttcccttaaggtaccaaAGATGCTTCCCCTATTCAAAATT
AGGTTTATTATTGGAGGGTTTATAAGCATAAATAGGCTTTTTTATTCTGC
AACATGTTTAAAACTTAGGTTATGTTCTTATTTGATGTAAGTTCTATCTG
TGGTGAATCATTATTATTCTTCACTTTTCTCTTTAGGCAAACTCATACCT
GTCGGATACGGAATCAAGAAACTTCAGATCAACGCCGTCATCGTAGACGA
TAAGGTCAGTAAATGAAGTTTGTTTTAGGTTGAGATGTTGTTTTCCTTGC
TCATTCCGATGATTAGATGAAACTCACACACTTACTTATTTGAAACATGT
GAAAATATTCTGCAAATATGAGGATTGAACAATAATGCTCCCATTGTATT
TCTTTAGACTTCAGCCTTTTTATGTTACACTAATCCTGCTTGTTTTGTTT
ATAAGCATGTTCTTTTGGAAAACAGGCTCGGTTATTCTTAGCTCTTTGAT
TCATTTAAAATGGAAAAGAGAATGAATCTTCCCAAATAAACAGCCCATGA
CTACTGACCCACTACCAAAGCTCACTGATATTCTTatgatatgcttattt
ttcaCCAAATCCAAGTAttagtatgcttataaacgttatgcttataaaag
aaaaacgtgtatcgtCCTGTTCAATGATTACTACATATACTCACACATTT
ACTTATTTGATATATCTGTGAAAATATTCTGCAAATATGAGAACCAGGGC
GAAGTTTTAGTTACTGTCAGGTCTTTTTACTTTGTCTAACCAGTTTTGAA
TTCTGTTCAGATAATCCAATGATTATTATAAATCACACACATTCTTTGAT
ATTCGTGAAAATATTCTGCAAATATGAGGATTTACTGATAATGCTGTTCC
ACCTTTCTATTTCGGTTTATGCTGTTTCATAcatcatgaaaaatgttttc
cttttccAGATTTCGACGGACTNGGTTTATGCTGTTTCATAcatcatgaa
aaatgttttcctttttcaGATTTCGACGGACTGGTTAGAAGAGAAAATTA
CGGAAGACGAAGAGCGTGTCCAATCCATGGATATCGCTGCTTTCAACAAG
ATTTAAATTCTCATTCACCACAGCTTTATCGTTATTTCTTATCTTTATGT
ACATCTCGAATTTTGTCAATGAATATTAACAAACTGCTATTTCTATGTCA
ATTCGactttaattatttttattatccGCTATTTTAAAGGTATTCAGAAT
CATTTAAAAATCCTTCAAGTCTTCCCCTTTTTAGGCATCTCAGCGTCGAT
CGACTTTGGGCTGTGTGCAGTAATTGCTTTTGATAGCTTCCGAGTTCTGC
CATTTTCTGTTTGTATGAGTAAACAAACACCCACAGG

Coding sequence (CDS) from alignment at scaffold_1:164966..171752+

>TCONS_00045568 ID=TCONS_00045568|Name=TCONS_00045568|organism=Clytia hemisphaerica|type=CDS|length=7047bp|location=Sequence derived from alignment at scaffold_1:164966..171752+ (Clytia hemisphaerica)
ATGGTTATCCTCCCTGGCGAAAGTAtggcaaattacgcatgcgcattATA
TGGACTGGAATTGGAGCATCCACTATATgacGGTGCTGAAGCTTTTAAAG
ACAGAAATCTACACATCACAATCAACATGTTTGGAGACCTTAAAAGTGCT
GCTGGTGTCAAAGAATTAAATTGCTTTTTAGCCGATAAGAGTTATATTGA
AGGATACATTCCTTCCCAAGCTGATGTCACTGTCTTTGCTGCTCTTGCTT
CAGCCCCTGGAACAGAGTTTGCCCATGCTTTGAGATGGTACAATCACATT
CGCTCTTACTCTTGTGATGAAAAGAAAAGCTTTGCAAGCGCTACTGGTGA
TCATGGTGTGAGAGGAGCTGAACAAGCTAAGAAAGACGACGATGATGAAT
TGGATTTGTTTGGGTCTGACTCTGACGAAGAAGAAGAGactgaagaagaa
aagaaagtcaGAGAAGAACGACTTGCCAAATATGCTGCCAAAAAAGCCAA
CAAGAAAACTGTAATCGCTAAATCAAGTCTTTTAATCGACGTCAAACCAT
GGGATGATGAAACTGACATGAAAGCTCTAGAAGCAGAAGTTCGAAAGATC
GAAGCCGAAGGGCTTTTGTGGGGTGCAAGCAAACTCATACCTGTCGGATA
CGGAATCAAGAAACTTCAGATCAACGCCGTCATCGTAGACGATAAGATTT
CGACGGACTGGTTAGAAGAGAAAATTACGGAAGACGAAGAGCGTGTCCAA
TCCATGGATATCGCTGCTTTCAACAAGATTTAAATGGTTATCCTCCCTGG
CGAAAGTAtggcaaattacgcatgcgcattATATGGACTGGAATTGGAGC
ATCCACTATATgacGGTGCTGAAGCTTTTAAAGACAGAAATCTACACATC
ACAATCAACATGTTTGGAGACCTTAAAAGTGCTGCTGGTGTCAAAGAATT
AAATTGCTTTTTAGCCGATAAGAGTTATATTGAAGGATACATTCCTTCCC
AAGCTGATGTCACTGTCTTTGCTGCTCTTGCTTCAGCCCCTGGAACAGAG
TTTGCCCATGCTTTGAGATGGTACAATCACATTCGCTCTTACTCTTGTGA
TGAAAAGAAAAGCTTTGCAAGCGCTACTGGTGATCATGGTGTGAGAGGAG
CTGAACAAGCTAAGAAAGACGACGATGATGAATTGGATTTGTTTGGGTCT
GACTCTGACGAAGAAGAAGAGactgaagaagaaaagaaagtcaGAGAAGA
ACGACTTGCCAAATATGCTGCCAAAAAAGCCAACAAGAAAACTGTAATCG
CTAAATCAAGTCTTTTAATCGACGTCAAACCATGGGATGATGAAACTGAC
ATGAAAGCTCTAGAAGCAGAAGTTCGAAAGATCGAAGCCGAAGGGCTTTT
GTGGGGTGCAAGCAAACTCATACCTGTCGGATACGGAATCAAGAAACTTC
AGATCAACGCCGTCATCGTAGACGATAAGATTTCGACGGACTGGTTAGAA
GAGAAAATTACGGAAGACGAAGAGCGTGTCCAATCCATGGATATCGCTGC
TTTCAACAAGATTTAAATGGTTATCCTCCCTGGCGAAAGTAtggcaaatt
acgcatgcgcattATATGGACTGGAATTGGAGCATCCACTATATgacGGT
GCTGAAGCTTTTAAAGACAGAAATCTACACATCACAATCAACATGTTTGG
AGACCTTAAAAGTGCTGCTGGTGTCAAAGAATTAAATTGCTTTTTAGCCG
ATAAGAGTTATATTGAAGGATACATTCCTTCCCAAGCTGATGTCACTGTC
TTTGCTGCTCTTGCTTCAGCCCCTGGAACAGAGTTTGCCCATGCTTTGAG
ATGGTACAATCACATTCGCTCTTACTCTTGTGATGAAAAGAAAAGCTTTG
CAAGCGCTACTGGTGATCATGGTGTGAGAGGAGCTGAACAAGCTAAGAAA
GACGACGATGATGAATTGGATTTGTTTGGGTCTGACTCTGACGAAGAAGA
AGAGactgaagaagaaaagaaagtcaGAGAAGAACGACTTGCCAAATATG
CTGCCAAAAAAGCCAACAAGAAAACTGTAATCGCTAAATCAAGTCTTTTA
ATCGACGTCAAACCATGGGATGATGAAACTGACATGAAAGCTCTAGAAGC
AGAAGTTCGAAAGATCGAAGCCGAAGGGCTTTTGTGGGGTGCAAGCAAAC
TCATACCTGTCGGATACGGAATCAAGAAACTTCAGATCAACGCCGTCATC
GTAGACGATAAGATTTCGACGGACTGGTTAGAAGAGAAAATTACGGAAGA
CGAAGAGCGTGTCCAATCCATGGATATCGCTGCTTTCAACAAGATTTAAA
TGGTTATCCTCCCTGGCGAAAGTAtggcaaattacgcatgcgcattATAT
GGACTGGAATTGGAGCATCCACTATATgacGGTGCTGAAGCTTTTAAAGA
CAGAAATCTACACATCACAATCAACATGTTTGGAGACCTTAAAAGTGCTG
CTGGTGTCAAAGAATTAAATTGCTTTTTAGCCGATAAGAGTTATATTGAA
GGATACATTCCTTCCCAAGCTGATGTCACTGTCTTTGCTGCTCTTGCTTC
AGCCCCTGGAACAGAGTTTGCCCATGCTTTGAGATGGTACAATCACATTC
GCTCTTACTCTTGTGATGAAAAGAAAAGCTTTGCAAGCGCTACTGGTGAT
CATGGTGTGAGAGGAGCTGAACAAGCTAAGAAAGACGACGATGATGAATT
GGATTTGTTTGGGTCTGACTCTGACGAAGAAGAAGAGactgaagaagaaa
agaaagtcaGAGAAGAACGACTTGCCAAATATGCTGCCAAAAAAGCCAAC
AAGAAAACTGTAATCGCTAAATCAAGTCTTTTAATCGACGTCAAACCATG
GGATGATGAAACTGACATGAAAGCTCTAGAAGCAGAAGTTCGAAAGATCG
AAGCCGAAGGGCTTTTGTGGGGTGCAAGCAAACTCATACCTGTCGGATAC
GGAATCAAGAAACTTCAGATCAACGCCGTCATCGTAGACGATAAGATTTC
GACGGACTGGTTAGAAGAGAAAATTACGGAAGACGAAGAGCGTGTCCAAT
CCATGGATATCGCTGCTTTCAACAAGATTTAAATGGTTATCCTCCCTGGC
GAAAGTAtggcaaattacgcatgcgcattATATGGACTGGAATTGGAGCA
TCCACTATATgacGGTGCTGAAGCTTTTAAAGACAGAAATCTACACATCA
CAATCAACATGTTTGGAGACCTTAAAAGTGCTGCTGGTGTCAAAGAATTA
AATTGCTTTTTAGCCGATAAGAGTTATATTGAAGGATACATTCCTTCCCA
AGCTGATGTCACTGTCTTTGCTGCTCTTGCTTCAGCCCCTGGAACAGAGT
TTGCCCATGCTTTGAGATGGTACAATCACATTCGCTCTTACTCTTGTGAT
GAAAAGAAAAGCTTTGCAAGCGCTACTGGTGATCATGGTGTGAGAGGAGC
TGAACAAGCTAAGAAAGACGACGATGATGAATTGGATTTGTTTGGGTCTG
ACTCTGACGAAGAAGAAGAGactgaagaagaaaagaaagtcaGAGAAGAA
CGACTTGCCAAATATGCTGCCAAAAAAGCCAACAAGAAAACTGTAATCGC
TAAATCAAGTCTTTTAATCGACGTCAAACCATGGGATGATGAAACTGACA
TGAAAGCTCTAGAAGCAGAAGTTCGAAAGATCGAAGCCGAAGGGCTTTTG
TGGGGTGCAAGCAAACTCATACCTGTCGGATACGGAATCAAGAAACTTCA
GATCAACGCCGTCATCGTAGACGATAAGATTTCGACGGACTGGTTAGAAG
AGAAAATTACGGAAGACGAAGAGCGTGTCCAATCCATGGATATCGCTGCT
TTCAACAAGATTTAAATGGTTATCCTCCCTGGCGAAAGTAtggcaaatta
cgcatgcgcattATATGGACTGGAATTGGAGCATCCACTATATgacGGTG
CTGAAGCTTTTAAAGACAGAAATCTACACATCACAATCAACATGTTTGGA
GACCTTAAAAGTGCTGCTGGTGTCAAAGAATTAAATTGCTTTTTAGCCGA
TAAGAGTTATATTGAAGGATACATTCCTTCCCAAGCTGATGTCACTGTCT
TTGCTGCTCTTGCTTCAGCCCCTGGAACAGAGTTTGCCCATGCTTTGAGA
TGGTACAATCACATTCGCTCTTACTCTTGTGATGAAAAGAAAAGCTTTGC
AAGCGCTACTGGTGATCATGGTGTGAGAGGAGCTGAACAAGCTAAGAAAG
ACGACGATGATGAATTGGATTTGTTTGGGTCTGACTCTGACGAAGAAGAA
GAGactgaagaagaaaagaaagtcaGAGAAGAACGACTTGCCAAATATGC
TGCCAAAAAAGCCAACAAGAAAACTGTAATCGCTAAATCAAGTCTTTTAA
TCGACGTCAAACCATGGGATGATGAAACTGACATGAAAGCTCTAGAAGCA
GAAGTTCGAAAGATCGAAGCCGAAGGGCTTTTGTGGGGTGCAAGCAAACT
CATACCTGTCGGATACGGAATCAAGAAACTTCAGATCAACGCCGTCATCG
TAGACGATAAGATTTCGACGGACTGGTTAGAAGAGAAAATTACGGAAGAC
GAAGAGCGTGTCCAATCCATGGATATCGCTGCTTTCAACAAGATTTAAAT
GGTTATCCTCCCTGGCGAAAGTAtggcaaattacgcatgcgcattATATG
GACTGGAATTGGAGCATCCACTATATgacGGTGCTGAAGCTTTTAAAGAC
AGAAATCTACACATCACAATCAACATGTTTGGAGACCTTAAAAGTGCTGC
TGGTGTCAAAGAATTAAATTGCTTTTTAGCCGATAAGAGTTATATTGAAG
GATACATTCCTTCCCAAGCTGATGTCACTGTCTTTGCTGCTCTTGCTTCA
GCCCCTGGAACAGAGTTTGCCCATGCTTTGAGATGGTACAATCACATTCG
CTCTTACTCTTGTGATGAAAAGAAAAGCTTTGCAAGCGCTACTGGTGATC
ATGGTGTGAGAGGAGCTGAACAAGCTAAGAAAGACGACGATGATGAATTG
GATTTGTTTGGGTCTGACTCTGACGAAGAAGAAGAGactgaagaagaaaa
gaaagtcaGAGAAGAACGACTTGCCAAATATGCTGCCAAAAAAGCCAACA
AGAAAACTGTAATCGCTAAATCAAGTCTTTTAATCGACGTCAAACCATGG
GATGATGAAACTGACATGAAAGCTCTAGAAGCAGAAGTTCGAAAGATCGA
AGCCGAAGGGCTTTTGTGGGGTGCAAGCAAACTCATACCTGTCGGATACG
GAATCAAGAAACTTCAGATCAACGCCGTCATCGTAGACGATAAGATTTCG
ACGGACTGGTTAGAAGAGAAAATTACGGAAGACGAAGAGCGTGTCCAATC
CATGGATATCGCTGCTTTCAACAAGATTTAAATGGTTATCCTCCCTGGCG
AAAGTAtggcaaattacgcatgcgcattATATGGACTGGAATTGGAGCAT
CCACTATATgacGGTGCTGAAGCTTTTAAAGACAGAAATCTACACATCAC
AATCAACATGTTTGGAGACCTTAAAAGTGCTGCTGGTGTCAAAGAATTAA
ATTGCTTTTTAGCCGATAAGAGTTATATTGAAGGATACATTCCTTCCCAA
GCTGATGTCACTGTCTTTGCTGCTCTTGCTTCAGCCCCTGGAACAGAGTT
TGCCCATGCTTTGAGATGGTACAATCACATTCGCTCTTACTCTTGTGATG
AAAAGAAAAGCTTTGCAAGCGCTACTGGTGATCATGGTGTGAGAGGAGCT
GAACAAGCTAAGAAAGACGACGATGATGAATTGGATTTGTTTGGGTCTGA
CTCTGACGAAGAAGAAGAGactgaagaagaaaagaaagtcaGAGAAGAAC
GACTTGCCAAATATGCTGCCAAAAAAGCCAACAAGAAAACTGTAATCGCT
AAATCAAGTCTTTTAATCGACGTCAAACCATGGGATGATGAAACTGACAT
GAAAGCTCTAGAAGCAGAAGTTCGAAAGATCGAAGCCGAAGGGCTTTTGT
GGGGTGCAAGCAAACTCATACCTGTCGGATACGGAATCAAGAAACTTCAG
ATCAACGCCGTCATCGTAGACGATAAGATTTCGACGGACTGGTTAGAAGA
GAAAATTACGGAAGACGAAGAGCGTGTCCAATCCATGGATATCGCTGCTT
TCAACAAGATTTAAATGGTTATCCTCCCTGGCGAAAGTAtggcaaattac
gcatgcgcattATATGGACTGGAATTGGAGCATCCACTATATgacGGTGC
TGAAGCTTTTAAAGACAGAAATCTACACATCACAATCAACATGTTTGGAG
ACCTTAAAAGTGCTGCTGGTGTCAAAGAATTAAATTGCTTTTTAGCCGAT
AAGAGTTATATTGAAGGATACATTCCTTCCCAAGCTGATGTCACTGTCTT
TGCTGCTCTTGCTTCAGCCCCTGGAACAGAGTTTGCCCATGCTTTGAGAT
GGTACAATCACATTCGCTCTTACTCTTGTGATGAAAAGAAAAGCTTTGCA
AGCGCTACTGGTGATCATGGTGTGAGAGGAGCTGAACAAGCTAAGAAAGA
CGACGATGATGAATTGGATTTGTTTGGGTCTGACTCTGACGAAGAAGAAG
AGactgaagaagaaaagaaagtcaGAGAAGAACGACTTGCCAAATATGCT
GCCAAAAAAGCCAACAAGAAAACTGTAATCGCTAAATCAAGTCTTTTAAT
CGACGTCAAACCATGGGATGATGAAACTGACATGAAAGCTCTAGAAGCAG
AAGTTCGAAAGATCGAAGCCGAAGGGCTTTTGTGGGGTGCAAGCAAACTC
ATACCTGTCGGATACGGAATCAAGAAACTTCAGATCAACGCCGTCATCGT
AGACGATAAGATTTCGACGGACTGGTTAGAAGAGAAAATTACGGAAGACG
AAGAGCGTGTCCAATCCATGGATATCGCTGCTTTCAACAAGATTTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_029135XLOC_029135Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00045568-exon-scaffold_1-1491911889:164966..165157TCONS_00045568-exon-scaffold_1-1491911889:164966..165157Clytia hemisphaericaexon
TCONS_00045568-exon-scaffold_1-1510915933:164966..165157TCONS_00045568-exon-scaffold_1-1510915933:164966..165157Clytia hemisphaericaexon
TCONS_00045568-exon-scaffold_1-1575043694:164966..165157TCONS_00045568-exon-scaffold_1-1575043694:164966..165157Clytia hemisphaericaexon
TCONS_00045568-exon-scaffold_1-1491911889:165502..165623TCONS_00045568-exon-scaffold_1-1491911889:165502..165623Clytia hemisphaericaexon
TCONS_00045568-exon-scaffold_1-1510915933:165502..165623TCONS_00045568-exon-scaffold_1-1510915933:165502..165623Clytia hemisphaericaexon
TCONS_00045568-exon-scaffold_1-1575043694:165502..165623TCONS_00045568-exon-scaffold_1-1575043694:165502..165623Clytia hemisphaericaexon
TCONS_00045568-exon-scaffold_1-1491911889:166900..167025TCONS_00045568-exon-scaffold_1-1491911889:166900..167025Clytia hemisphaericaexon
TCONS_00045568-exon-scaffold_1-1510915933:166900..167025TCONS_00045568-exon-scaffold_1-1510915933:166900..167025Clytia hemisphaericaexon
TCONS_00045568-exon-scaffold_1-1575043694:166900..167025TCONS_00045568-exon-scaffold_1-1575043694:166900..167025Clytia hemisphaericaexon
TCONS_00045568-exon-scaffold_1-1491911889:167305..167413TCONS_00045568-exon-scaffold_1-1491911889:167305..167413Clytia hemisphaericaexon
TCONS_00045568-exon-scaffold_1-1510915933:167305..167413TCONS_00045568-exon-scaffold_1-1510915933:167305..167413Clytia hemisphaericaexon
TCONS_00045568-exon-scaffold_1-1575043694:167305..167413TCONS_00045568-exon-scaffold_1-1575043694:167305..167413Clytia hemisphaericaexon
TCONS_00045568-exon-scaffold_1-1491911889:169120..169186TCONS_00045568-exon-scaffold_1-1491911889:169120..169186Clytia hemisphaericaexon
TCONS_00045568-exon-scaffold_1-1510915933:169120..169186TCONS_00045568-exon-scaffold_1-1510915933:169120..169186Clytia hemisphaericaexon
TCONS_00045568-exon-scaffold_1-1575043694:169120..169186TCONS_00045568-exon-scaffold_1-1575043694:169120..169186Clytia hemisphaericaexon
TCONS_00045568-exon-scaffold_1-1491911889:169328..169387TCONS_00045568-exon-scaffold_1-1491911889:169328..169387Clytia hemisphaericaexon
TCONS_00045568-exon-scaffold_1-1510915933:169328..169387TCONS_00045568-exon-scaffold_1-1510915933:169328..169387Clytia hemisphaericaexon
TCONS_00045568-exon-scaffold_1-1575043694:169328..169387TCONS_00045568-exon-scaffold_1-1575043694:169328..169387Clytia hemisphaericaexon
TCONS_00045568-exon-scaffold_1-1491911889:169553..169615TCONS_00045568-exon-scaffold_1-1491911889:169553..169615Clytia hemisphaericaexon
TCONS_00045568-exon-scaffold_1-1510915933:169553..169615TCONS_00045568-exon-scaffold_1-1510915933:169553..169615Clytia hemisphaericaexon
TCONS_00045568-exon-scaffold_1-1575043694:169553..169615TCONS_00045568-exon-scaffold_1-1575043694:169553..169615Clytia hemisphaericaexon
TCONS_00045568-exon-scaffold_1-1491911889:170552..170619TCONS_00045568-exon-scaffold_1-1491911889:170552..170619Clytia hemisphaericaexon
TCONS_00045568-exon-scaffold_1-1510915933:170552..170619TCONS_00045568-exon-scaffold_1-1510915933:170552..170619Clytia hemisphaericaexon
TCONS_00045568-exon-scaffold_1-1575043694:170552..170619TCONS_00045568-exon-scaffold_1-1575043694:170552..170619Clytia hemisphaericaexon
TCONS_00045568-exon-scaffold_1-1491911889:171385..171752TCONS_00045568-exon-scaffold_1-1491911889:171385..171752Clytia hemisphaericaexon
TCONS_00045568-exon-scaffold_1-1510915933:171385..171752TCONS_00045568-exon-scaffold_1-1510915933:171385..171752Clytia hemisphaericaexon
TCONS_00045568-exon-scaffold_1-1575043694:171385..171752TCONS_00045568-exon-scaffold_1-1575043694:171385..171752Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00045568-proteinTCONS_00045568-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_1supercontigscaffold_1:164966..171752 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
333.747	331.31	215.152	233.766	73.842	61.6721	124.726	132.488	203.86	165.799	233.698	286.694	334.51	393.308	273.537	238.497	209.335	211.14	195.067	180.771	251.301	249.025	322.2	290.864	205.926	242.166	249.366	327.529	210.127	226.757
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR014038EF1B_bsu/dsu_GNE
IPR018940EF-1_beta_acid_region_euk
IPR014717Transl_elong_EF1B/ribosomal_S6
IPR001326Transl_elong_EF1B_B/D_CS
IPR010987Glutathione-S-Trfase_C-like
Vocabulary: Biological Process
TermDefinition
GO:0006414translational elongation
Vocabulary: Molecular Function
TermDefinition
GO:0003746translation elongation factor activity
Vocabulary: Cellular Component
TermDefinition
GO:0005853eukaryotic translation elongation factor 1 complex
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006414 translational elongation
cellular_component GO:0005853 eukaryotic translation elongation factor 1 complex
molecular_function GO:0003746 translation elongation factor activity
Blast
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BLAST of TCONS_00045568 vs. Swiss-Prot (Human)
Match: EF1B (Elongation factor 1-beta OS=Homo sapiens GN=EEF1B2 PE=1 SV=3)

HSP 1 Score: 206.838 bits (525), Expect = 1.112e-63
Identity = 130/224 (58.04%), Postives = 160/224 (71.43%), Query Frame = 1 
Query:  241 FGDLKSAAGVKELNCFLADKSYIEGYIPSQADVTVFAALASAPGTEFAHALRWYNHIRSYSCDEKKSFAS---ATGDHGVRGAEQAKKXXXXXXXXXXXXX----XXXXXXXXXXXXXXXXLXXXXXXXXXXXTVIAKSSLLIDVKPWDDETDMKALEAEVRKIEAEGLLWGASKLIPVGYGIKKLQINAVIVDDKISTDWLEEKITEDEERVQSMDIAAFNKI 891
            FGDLKS AG++ LN +LADKSYIEGY+PSQADV VF A++S P  +  HALRWYNHI+SY   EK S      A G +G    E        +            D+EEE+EE K++REERLA+Y +KKA K  ++AKSS+L+DVKPWDDETDM  LE  VR I+A+GL+WG+SKL+PVGYGIKKLQI  V+ DDK+ TD LEE+IT  E+ VQSMD+AAFNKI
Sbjct:    3 FGDLKSPAGLQVLNDYLADKSYIEGYVPSQADVAVFEAVSSPPPADLCHALRWYNHIKSYE-KEKASLPGVKKALGKYGPADVEDTTGSGATDSKDDDDIDLFGSDDEEESEEAKRLREERLAQYESKKAKKPALVAKSSILLDVKPWDDETDMAKLEECVRSIQADGLVWGSSKLVPVGYGIKKLQIQCVVEDDKVGTDMLEEQITAFEDYVQSMDVAAFNKI 225
The following BLAST results are available for this feature:
BLAST of TCONS_00045568 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
EF1B1.112e-6358.04Elongation factor 1-beta OS=Homo sapiens GN=EEF1B2... [more]
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