TCONS_00045568-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00045568-protein
Unique NameTCONS_00045568-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length260

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00045568-protein ID=TCONS_00045568-protein|Name=TCONS_00045568-protein|organism=Clytia hemisphaerica|type=polypeptide|length=260bp
MVILPGESMANYACALYGLELEHPLYDGAEAFKDRNLHITINMFGDLKSA
AGVKELNCFLADKSYIEGYIPSQADVTVFAALASAPGTEFAHALRWYNHI
RSYSCDEKKSFASATGDHGVRGAEQAKKDDDDELDLFGSDSDEEEETEEE
KKVREERLAKYAAKKANKKTVIAKSSLLIDVKPWDDETDMKALEAEVRKI
EAEGLLWGASKLIPVGYGIKKLQINAVIVDDKISTDWLEEKITEDEERVQ
SMDIAAFNKI
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_029135XLOC_029135Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00045568TCONS_00045568Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR014038EF1B_bsu/dsu_GNE
IPR018940EF-1_beta_acid_region_euk
IPR014717Transl_elong_EF1B/ribosomal_S6
IPR001326Transl_elong_EF1B_B/D_CS
IPR010987Glutathione-S-Trfase_C-like
Vocabulary: Biological Process
TermDefinition
GO:0006414translational elongation
Vocabulary: Molecular Function
TermDefinition
GO:0003746translation elongation factor activity
Vocabulary: Cellular Component
TermDefinition
GO:0005853eukaryotic translation elongation factor 1 complex
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006414 translational elongation
cellular_component GO:0005853 eukaryotic translation elongation factor 1 complex
molecular_function GO:0003746 translation elongation factor activity
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 144..164
NoneNo IPR availableGENE3D1.20.1050.10coord: 46..172
e-value: 1.0E-5
score: 25.0
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 112..152
NoneNo IPR availableCDDcd10308GST_C_eEF1b_likecoord: 31..103
e-value: 3.48649E-25
score: 95.1832
IPR014038Translation elongation factor EF1B, beta/delta subunit, guanine nucleotide exchange domainSMARTSM00888EF1_GNE_2coord: 174..260
e-value: 6.2E-39
score: 145.3
IPR014038Translation elongation factor EF1B, beta/delta subunit, guanine nucleotide exchange domainPFAMPF00736EF1_GNEcoord: 176..260
e-value: 2.5E-32
score: 110.8
IPR014038Translation elongation factor EF1B, beta/delta subunit, guanine nucleotide exchange domainCDDcd00292EF1Bcoord: 172..260
e-value: 1.94087E-40
score: 135.417
IPR014038Translation elongation factor EF1B, beta/delta subunit, guanine nucleotide exchange domainSUPERFAMILY54984eEF-1beta-likecoord: 172..260
IPR018940Elongation factor 1 beta central acidic region, eukaryoteSMARTSM01182EF-1_beta_acid_2coord: 136..165
e-value: 4.4E-4
score: 29.6
IPR018940Elongation factor 1 beta central acidic region, eukaryotePFAMPF10587EF-1_beta_acidcoord: 136..165
e-value: 2.8E-6
score: 27.6
IPR014717Translation elongation factor EF1B/ribosomal protein S6GENE3D3.30.70.60coord: 173..260
e-value: 1.7E-40
score: 136.6
IPR001326Translation elongation factor EF1B, beta/delta chains, conserved sitePROSITEPS00824EF1BD_1coord: 130..138
IPR001326Translation elongation factor EF1B, beta/delta chains, conserved sitePROSITEPS00825EF1BD_2coord: 249..260
IPR010987Glutathione S-transferase, C-terminal-likeSUPERFAMILY47616GST C-terminal domain-likecoord: 47..103

Blast
[Close]
BLAST of TCONS_00045568-protein vs. Swiss-Prot (Human)
Match: EF1B (Elongation factor 1-beta OS=Homo sapiens GN=EEF1B2 PE=1 SV=3)

HSP 1 Score: 240.736 bits (613), Expect = 3.684e-80
Identity = 138/226 (61.06%), Postives = 169/226 (74.78%), Query Frame = 0 
Query:   44 FGDLKSAAGVKELNCFLADKSYIEGYIPSQADVTVFAALASAPGTEFAHALRWYNHIRSYSCDEKKSFAS---ATGDHG------VRGAEQAKKDDDDELDLFGSDSDEEEETEEEKKVREERLAKYAAKKANKKTVIAKSSLLIDVKPWDDETDMKALEAEVRKIEAEGLLWGASKLIPVGYGIKKLQINAVIVDDKISTDWLEEKITEDEERVQSMDIAAFNKI 260
            FGDLKS AG++ LN +LADKSYIEGY+PSQADV VF A++S P  +  HALRWYNHI+SY   EK S      A G +G        G+      DDD++DLFGSD   EEE+EE K++REERLA+Y +KKA K  ++AKSS+L+DVKPWDDETDM  LE  VR I+A+GL+WG+SKL+PVGYGIKKLQI  V+ DDK+ TD LEE+IT  E+ VQSMD+AAFNKI
Sbjct:    3 FGDLKSPAGLQVLNDYLADKSYIEGYVPSQADVAVFEAVSSPPPADLCHALRWYNHIKSYE-KEKASLPGVKKALGKYGPADVEDTTGSGATDSKDDDDIDLFGSDD--EEESEEAKRLREERLAQYESKKAKKPALVAKSSILLDVKPWDDETDMAKLEECVRSIQADGLVWGSSKLVPVGYGIKKLQIQCVVEDDKVGTDMLEEQITAFEDYVQSMDVAAFNKI 225
The following BLAST results are available for this feature:
BLAST of TCONS_00045568-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
EF1B3.684e-8061.06Elongation factor 1-beta OS=Homo sapiens GN=EEF1B2... [more]
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