TCONS_00045552 (transcript) - C. hemisphaerica

Overview
NameTCONS_00045552
Unique NameTCONS_00045552
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length492

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00045552 ID=TCONS_00045552|Name=TCONS_00045552|organism=Clytia hemisphaerica|type=transcript|length=492bp
tagtattaaaaaaaacttcattaTTTATGGTAAGTTTATTGCGGATCAAA
ACTTGATTCCTTTTATTCAAAAACGTTGTTCCCAGAGCGAGACACAAGTT
TTTAAAACCTCTGAAACCTTCACGACTCAAACGAAAATTCTGAGTTTACC
TTAAGTTTTTCTTAAGAAGGTTCAAACCATTGAGTGGGGCGAAGGGACTA
GAGATGaattttcaacctttctcaagcaagaaaaagtgaagcgtTAACTT
TACCcctcatttaaaatttttttgttgaaaaacacACGGGTCACGTGTCc
agaatgggaaataagtgactTCATTTCCCATTCTGGAGTTTTCGTAGCAA
GAAATCTCAACTCAGCATAATTTGACAATCGGTTGTCCACTTTTCTTTTG
CCAAGTACAAAATATTGCGTTCGTTTTCCAGTAGATAAAACACTTGTCTC
AAAGCACCATTTTGTTCATTTCGTAGTTTGCTCAAATGGTTA
Run BLAST on NCBI

transcript from alignment at sc0008286:1..492

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00045552 ID=TCONS_00045552|Name=TCONS_00045552|organism=Clytia hemisphaerica|type=transcript|length=492bp|location=Sequence derived from alignment at sc0008286:1..492 (Clytia hemisphaerica)
TAACCATTTGAGCAAACTACGAAATGAACAAAATGGTGCTTTGAGACAAG
TGTTTTATCTACTGGAAAACGAACGCAATATTTTGTACTTGGCAAAAGAA
AAGTGGACAACCGATTGTCAAATTATGCTGAGTTGAGATTTCTTGCTACG
AAAACTCCAGAATGGGAAATGAagtcacttatttcccattctgGACACGT
GACCCGTgtgtttttcaacaaaaaaattttaaatgaggGGTAAAGTTAac
gcttcactttttcttgcttgagaaaggttgaaaattCATCTCTAGTCCCT
TCGCCCCACTCAATGGTTTGAACCTTCTTAAGAAAAACTTAAGGTAAACT
CAGAATTTTCGTTTGAGTCGTGAAGGTTTCAGAGGTTTTAAAAACTTGTG
TCTCGCTCTGGGAACAACGTTTTTGAATAAAAGGAATCAAGTTTTGATCC
GCAATAAACTTACCATAAAtaatgaagttttttttaatacta
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_029129XLOC_029129Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00045552-exon-sc0008286-1491911889:1..492TCONS_00045552-exon-sc0008286-1491911889:1..492Clytia hemisphaericaexon
TCONS_00045552-exon-sc0008286-1510915933:1..492TCONS_00045552-exon-sc0008286-1510915933:1..492Clytia hemisphaericaexon
TCONS_00045552-exon-sc0008286-1575043694:1..492TCONS_00045552-exon-sc0008286-1575043694:1..492Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0008286supercontigsc0008286:1..492 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.630453	0.144251	0	0	0.176612	0.757285	0.565769	0.38249	0.59319	0.472627	0.774597	0.553494	0.245923	0.941425	0.306638	0.43353	0.577576	0.304939	0.532336	0	0.697213	1.04404	3.47006	2.78822	0.426423	0.25032	1.27784	0.584577	2.49854	2.41473
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00045552 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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