TCONS_00045549 (transcript) - C. hemisphaerica

Overview
NameTCONS_00045549
Unique NameTCONS_00045549
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length495

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00045549 ID=TCONS_00045549|Name=TCONS_00045549|organism=Clytia hemisphaerica|type=transcript|length=495bp
CCGAATCTTTTCGTAAGTAGAGTTGATTGATGGAGTTTCGGTTCGCCAGT
TGAGAAGTATGTTGGAATCAGCAGTTTCGACATCACGATTGAAAATTGAT
CCGATTTCTTTGATGGATTCATTGACACAATCAAGAAGGAAGTTANCGCC
AGTTGAGAAGTATGTTGGAATCAGCAGTTTCAACATCACGATTGAAAATT
GTTTCAATTTCTTTGATGGATTCATTAACACAATCAAGAAGGAAGTTAAC
AGTTTCCTCCTTTACGGTGGCTGCACTGGCTTGTTGGGTTTGGTTGATAG
ATTTGTGATGTTGAGTTTGGACCTCATAAACTTTGGTGTTGAAGTCCTTT
ATCGATTGTACTGCAGTGGTGACTATCTCGTTGAATTCGTCTGGTAAGAT
TTCTTTTCCGAGTTTGATGGTGAGTTGTAATCGATTCATGTCGAAACGAA
TTTTTTCGACTTTATCAAAGATAGCAGTGACCTGATCTGGTTCCA
Run BLAST on NCBI

protein sequence of TCONS_00045549-protein

>TCONS_00045549-protein ID=TCONS_00045549-protein|Name=TCONS_00045549-protein|organism=Clytia hemisphaerica|type=polypeptide|length=116bp
EPDQVTAIFDKVEKIRFDMNRLQLTIKLGKEILPDEFNEIVTTAVQSIKD
FNTKVYEVQTQHHKSINQTQQASAATVKEETVNFLLDCVNESIKEIETIF
NRDVETADSNILLNWX
Run BLAST on NCBI

transcript from alignment at sc0008266:6..500

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00045549 ID=TCONS_00045549|Name=TCONS_00045549|organism=Clytia hemisphaerica|type=transcript|length=495bp|location=Sequence derived from alignment at sc0008266:6..500 (Clytia hemisphaerica)
TGGAACCAGATCAGGTCACTGCTATCTTTGATAAAGTCGAAAAAATTCGT
TTCGACATGAATCGATTACAACTCACCATCAAACTCGGAAAAGAAATCTT
ACCAGACGAATTCAACGAGATAGTCACCACTGCAGTACAATCGATAAAGG
ACTTCAACACCAAAGTTTATGAGGTCCAAACTCAACATCACAAATCTATC
AACCAAACCCAACAAGCCAGTGCAGCCACCGTAAAGGAGGAAACTGTTAA
CTTCCTTCTTGATTGTGTTAATGAATCCATCAAAGAAATTGAAACAATTT
TCAATCGTGATGTTGAAACTGCTGATTCCAACATACTTCTCAACTGGCGN
TAACTTCCTTCTTGATTGTGTCAATGAATCCATCAAAGAAATCGGATCAA
TTTTCAATCGTGATGTCGAAACTGCTGATTCCAACATACTTCTCAACTGG
CGAACCGAAACTCCATCAATCAACTCTACTTACGAAAAGATTCGG

Coding sequence (CDS) from alignment at sc0008266:6..500

>TCONS_00045549 ID=TCONS_00045549|Name=TCONS_00045549|organism=Clytia hemisphaerica|type=CDS|length=351bp|location=Sequence derived from alignment at sc0008266:6..500 (Clytia hemisphaerica)
GAACCAGATCAGGTCACTGCTATCTTTGATAAAGTCGAAAAAATTCGTTT
CGACATGAATCGATTACAACTCACCATCAAACTCGGAAAAGAAATCTTAC
CAGACGAATTCAACGAGATAGTCACCACTGCAGTACAATCGATAAAGGAC
TTCAACACCAAAGTTTATGAGGTCCAAACTCAACATCACAAATCTATCAA
CCAAACCCAACAAGCCAGTGCAGCCACCGTAAAGGAGGAAACTGTTAACT
TCCTTCTTGATTGTGTTAATGAATCCATCAAAGAAATTGAAACAATTTTC
AATCGTGATGTTGAAACTGCTGATTCCAACATACTTCTCAACTGGCGNTA
A
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_029126XLOC_029126Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00045549-proteinTCONS_00045549-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00045549-exon-sc0008266-1491911889:6..500TCONS_00045549-exon-sc0008266-1491911889:6..500Clytia hemisphaericaexon
TCONS_00045549-exon-sc0008266-1510915933:6..500TCONS_00045549-exon-sc0008266-1510915933:6..500Clytia hemisphaericaexon
TCONS_00045549-exon-sc0008266-1575043694:6..500TCONS_00045549-exon-sc0008266-1575043694:6..500Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0008266supercontigsc0008266:6..500 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.81111	2.02263	1.04273	0.464195	1.84014	1.12096	0.318967	0.447919	0.104533	0.388443	0.125677	0.2987	0.577503	0	0.49307	0.226774	0.0931224	0.190895	0	0.275976	0.448251	0	0.142231	0.181731	1.41784	1.06978	0.170094	0.544588	0.19383	1.59402
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00045549 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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