TCONS_00045519 (transcript) - C. hemisphaerica

Overview
NameTCONS_00045519
Unique NameTCONS_00045519
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length228

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00045519 ID=TCONS_00045519|Name=TCONS_00045519|organism=Clytia hemisphaerica|type=transcript|length=228bp
AGCGGTCAAATATTGAGAAAATTGGTGGATGTTTAAAGAAAGGTTTTAAA
TGTTTGAATTGAGATTAAAATATCGCAACAAGTTTCATTGAAATTATAGG
GTAAAGAAAATGTGATGTTTGGGTTGAAGATGAACGGTTCAGAGTTTGAC
GGACGAAAATTGAGAGTATTCAAAGCTAAAGATAAAGAAGAAGTCAATAC
AACGAATACCGCACGGAAATTTAAAGGT
Run BLAST on NCBI

transcript from alignment at sc0008168:334..561

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00045519 ID=TCONS_00045519|Name=TCONS_00045519|organism=Clytia hemisphaerica|type=transcript|length=228bp|location=Sequence derived from alignment at sc0008168:334..561 (Clytia hemisphaerica)
ACCTTTAAATTTCCGTGCGGTATTCGTTGTATTGACTTCTTCTTTATCTT
TAGCTTTGAATACTCTCAATTTTCGTCCGTCAAACTCTGAACCGTTCATC
TTCAACCCAAACATCACATTTTCTTTACCCTATAATTTCAATGAAACTTG
TTGCGATATTTTAATCTCAATTCAAACATTTAAAACCTTTCTTTAAACAT
CCACCAATTTTCTCAATATTTGACCGCT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_029096XLOC_029096Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00045519-exon-sc0008168-1491911889:334..561TCONS_00045519-exon-sc0008168-1491911889:334..561Clytia hemisphaericaexon
TCONS_00045519-exon-sc0008168-1510915933:334..561TCONS_00045519-exon-sc0008168-1510915933:334..561Clytia hemisphaericaexon
TCONS_00045519-exon-sc0008168-1575043694:334..561TCONS_00045519-exon-sc0008168-1575043694:334..561Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0008168supercontigsc0008168:334..561 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	55.3021	28.4778	25.6983	42.6232	15.7571	0	11.3791	5.00934	5.83859	0	5.97971	4.19726	8.59396	7.91796	0	5.43769	0	0	0	0	57.1813	42.1382	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00045519 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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