TCONS_00045512 (transcript) - C. hemisphaerica

Overview
NameTCONS_00045512
Unique NameTCONS_00045512
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length357

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00045512 ID=TCONS_00045512|Name=TCONS_00045512|organism=Clytia hemisphaerica|type=transcript|length=357bp
ATACATATATTGCAATGTATTTAAACAAAGATTATAAACAAagattataa
acaaaaattcattttaataGAACTAACACCATTTCAAGGCTATGAAGAAA
AAATGTTTGACCTCTCATAATATTGATCCTTGTGTTCAAATTCTTATACT
CATCAATGTAGCTCCTGATCTGTTTTTCCTTCATTTCAAGTTCTTCCTTC
TCAGCTTTCCTCTTAAACTGTTGTATGATCATGAATAAAGAATCATTGGT
TTGTATGGAAATAATCTCACATCCACACTGTAGACATTGACGCTTCCCAG
AAAGACATTTAGCACAAAAAGAATGCCCACAAGGGAACACCATGACAGGT
TTACGGT
Run BLAST on NCBI

transcript from alignment at sc0008148:1..357

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00045512 ID=TCONS_00045512|Name=TCONS_00045512|organism=Clytia hemisphaerica|type=transcript|length=357bp|location=Sequence derived from alignment at sc0008148:1..357 (Clytia hemisphaerica)
ACCGTAAACCTGTCATGGTGTTCCCTTGTGGGCATTCTTTTTGTGCTAAA
TGTCTTTCTGGGAAGCGTCAATGTCTACAGTGTGGATGTGAGATTATTTC
CATACAAACCAATGATTCTTTATTCATGATCATACAACAGTTTAAGAGGA
AAGCTGAGAAGGAAGAACTTGAAATGAAGGAAAAACAGATCAGGAGCTAC
ATTGATGAGTATAAGAATTTGAACACAAGGATCAATATTATGAGAGGTCA
AACATTTTTTCTTCATAGCCTTGAAATGGTGTTAGTTCtattaaaatgaa
tttttgtttataatctTTGTTTATAATCTTTGTTTAAATACATTGCAATA
TATGTAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_029089XLOC_029089Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00045512-exon-sc0008148-1491911889:1..357TCONS_00045512-exon-sc0008148-1491911889:1..357Clytia hemisphaericaexon
TCONS_00045512-exon-sc0008148-1510915933:1..357TCONS_00045512-exon-sc0008148-1510915933:1..357Clytia hemisphaericaexon
TCONS_00045512-exon-sc0008148-1575043694:1..357TCONS_00045512-exon-sc0008148-1575043694:1..357Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0008148supercontigsc0008148:1..357 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.362585	0	0	1.96174	2.60484	1.60675	1.60228	2.00617	1.86241	1.07666	0.687072	0.601845	1.09099	0.149696	0.619884	0.758561	1.31665	0.552434	0.290296	0	0.352766	0	1.89083	0.514741	1.43435	1.36305	0.498364	1.00938	1.62651
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00045512 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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