TCONS_00045504 (transcript) - C. hemisphaerica

Overview
NameTCONS_00045504
Unique NameTCONS_00045504
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length130

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00045504 ID=TCONS_00045504|Name=TCONS_00045504|organism=Clytia hemisphaerica|type=transcript|length=130bp
attaaattaaaattatttcattttaggTTGGTGTCAGGTGCTGGTGATAT
CAAGTTGACTAAAGATGGAAATGTTCTCCTTCATGAAATGCAAATCCAAC
ATCCTACCGCCTCGATGATTGCTAAAGTTG
Run BLAST on NCBI

transcript from alignment at sc0008106:116..607+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00045504 ID=TCONS_00045504|Name=TCONS_00045504|organism=Clytia hemisphaerica|type=transcript|length=492bp|location=Sequence derived from alignment at sc0008106:116..607+ (Clytia hemisphaerica)
attaaattaaaattatttcattttaggTTGGTGTCAGGTGCTGGTGATAT
CAAGTTGACTAAAGATGGAAATGTTCTCCTTCATGAAATGGTATTTTGGA
CTTATCCAATTTAGTTTTTCAAcataatattgaatttgaagCTTATGAGT
CGTTTAACACTTCATTGTTCTGTAATATTTTGTAACTTATGAATTAAACT
AGAACTTATTGTGTCATTTAAAgcaaaagaaaatggaaaaagaaattttt
agaaagagGAGAGACTTTCATACGTATATATATTataacagcaaaaaaat
ggaatattttatttattttacgtTTTCAGCAAATCCAACATCCTACCGCC
TCGATNaaaatggaaaaagaaatttttagaaagagGAGAGACTTTCATAC
GTATATTataacagcaaaaaaatggaatattttatttattttacgtTTTC
AGCAAATCCAACATCCTACCGCCTCGATGATTGCTAAAGTTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_029081XLOC_029081Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00045504-exon-sc0008106-1491911889:116..205TCONS_00045504-exon-sc0008106-1491911889:116..205Clytia hemisphaericaexon
TCONS_00045504-exon-sc0008106-1510915933:116..205TCONS_00045504-exon-sc0008106-1510915933:116..205Clytia hemisphaericaexon
TCONS_00045504-exon-sc0008106-1575043694:116..205TCONS_00045504-exon-sc0008106-1575043694:116..205Clytia hemisphaericaexon
TCONS_00045504-exon-sc0008106-1491911889:568..607TCONS_00045504-exon-sc0008106-1491911889:568..607Clytia hemisphaericaexon
TCONS_00045504-exon-sc0008106-1510915933:568..607TCONS_00045504-exon-sc0008106-1510915933:568..607Clytia hemisphaericaexon
TCONS_00045504-exon-sc0008106-1575043694:568..607TCONS_00045504-exon-sc0008106-1575043694:568..607Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0008106supercontigsc0008106:116..607 +
Expression
No biomaterial libraries express this feature.
Blast
[Close]
BLAST of TCONS_00045504 vs. Swiss-Prot (Human)
Match: TCPZ (T-complex protein 1 subunit zeta OS=Homo sapiens GN=CCT6A PE=1 SV=3)

HSP 1 Score: 70.4774 bits (171), Expect = 6.863e-16
Identity = 33/34 (97.06%), Postives = 34/34 (100.00%), Query Frame = 1 
Query:   28 LVSGAGDIKLTKDGNVLLHEMQIQHPTASMIAKV 129
            LVSGAGDIKLTKDGNVLLHEMQIQHPTAS+IAKV
Sbjct:   47 LVSGAGDIKLTKDGNVLLHEMQIQHPTASLIAKV 80
The following BLAST results are available for this feature:
BLAST of TCONS_00045504 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
TCPZ6.863e-1697.06T-complex protein 1 subunit zeta OS=Homo sapiens G... [more]
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