TCONS_00045502 (transcript) - C. hemisphaerica

Overview
NameTCONS_00045502
Unique NameTCONS_00045502
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length549

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00045502 ID=TCONS_00045502|Name=TCONS_00045502|organism=Clytia hemisphaerica|type=transcript|length=549bp
AATCTTTCCTCACCAAAGTCAAAGAACGTATTTACGACAAGAATGAGTGG
AAAACTACATTTCGGAAAATCGGAAATCGGAAACGAACAGGAAGCGATGA
TTGGAATTTTAAACTGACCGATAAATTTCAGAGTCAAAATGATAAGGACA
GAGACTGGGGTTTTAAGTTTAATAAATTAGGTAGTGTAACGTTGGGCGAA
GATGATTGGAGGATACAAAAGAAACAAATGGATGTACGTAGTGATGATCG
CTCGACACATTGGaaaaccaaatttcaaaaaatacaagagaaaaatgaag
atcCAAAAGCATGGCAAACACAATTCCGTAAAATGGAACCTATACCGGAA
GACCGGACATGGAAATCCGATATTGTTCCGATTTCTAATGATCTAGGTAC
TGAAGCGGACTGGAATATAAAGTTTATTGATATTGAGAAAAACGGTGAGC
GGCCCGAGGATTGGAACATTGATATGAAAGATGTGCCGGATTCTACTCGC
GATCCGGCAGATTGGAATATCAAGTTTAAACAACTAGAAGAACATCTAC
Run BLAST on NCBI

protein sequence of TCONS_00045502-protein

>TCONS_00045502-protein ID=TCONS_00045502-protein|Name=TCONS_00045502-protein|organism=Clytia hemisphaerica|type=polypeptide|length=182bp
SFLTKVKERIYDKNEWKTTFRKIGNRKRTGSDDWNFKLTDKFQSQNDKDR
DWGFKFNKLGSVTLGEDDWRIQKKQMDVRSDDRSTHWKTKFQKIQEKNED
PKAWQTQFRKMEPIPEDRTWKSDIVPISNDLGTEADWNIKFIDIEKNGER
PEDWNIDMKDVPDSTRDPADWNIKFKQLEEHL
Run BLAST on NCBI

transcript from alignment at sc0008099:1..608-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00045502 ID=TCONS_00045502|Name=TCONS_00045502|organism=Clytia hemisphaerica|type=transcript|length=608bp|location=Sequence derived from alignment at sc0008099:1..608- (Clytia hemisphaerica)
AATCTTTCCTCACCAAAGTCAAAGAACGTATTTACGACAAGAATGAGTGG
AAAACTACATTTCGGAAAATCGGAAATCGGAAACGAACAGGTGGTGATGA
TTGGAATTTTAAACTGACCGATAAATTTCAGAGTCAAAATGATAAANAGG
AAGCGATGATTGGAATTTTAAACTGACCGATAAATTTCAGAGTCAAAATG
ATAAGGACAGAGACTGGGGTTTTAAGTTTAATAAATTAGGTAGTGTAACG
TTGGGCGAAGATGATTGGAGGATACAAAAGAAACAAATGGATGTACGTAG
TGATGATCGCTCGACACATTGGAAAACCAAATTTCAAAAAATACAAGAGA
AAAATGAAGATCCAAAAGCATGGCAAACACAATTCCGTAAAATGGAACCT
ATACCGGAAGACCGGACATGGAAATCCGATATTGTTCCGATTTCTAATGA
TCTAGGTACTGAAGCGGACTGGAATATAAAGTTTATTGATATTGAGAAAA
ACGGTGAGCGGCCCGAGGATTGGAACATTGATATGAAAGATGTGCCGGAT
TCTACTCGCGATCCGGCAGATTGGAATATCAAGTTTAAACAACTAGAAGA
ACATCTAC

Coding sequence (CDS) from alignment at sc0008099:1..608-

>TCONS_00045502 ID=TCONS_00045502|Name=TCONS_00045502|organism=Clytia hemisphaerica|type=CDS|length=1092bp|location=Sequence derived from alignment at sc0008099:1..608- (Clytia hemisphaerica)
GAAGCGATGATTGGAATTTTAAACTGACCGATAAATTTCAGAGTCAAAAT
GATAAGGACAGAGACTGGGGTTTTAAGTTTAATAAATTAGGTAGTGTAAC
GTTGGGCGAAGATGATTGGAGGATACAAAAGAAACAAATGGATGTACGTA
GTGATGATCGCTCGACACATTGGAAAACCAAATTTCAAAAAATACAAGAG
AAAAATGAAGATCCAAAAGCATGGCAAACACAATTCCGTAAAATGGAACC
TATACCGGAAGACCGGACATGGAAATCCGATATTGTTCCGATTTCTAATG
ATCTAGGTACTGAAGCGGACTGGAATATAAAGTTTATTGATATTGAGAAA
AACGGTGAGCGGCCCGAGGATTGGAACATTGATATGAAAGATGTGCCGGA
TTCTACTCGCGATCCGGCAGATTGGAATATCAAGTTTAAACAACTAGAAG
AACATCTATCTTTCCTCACCAAAGTCAAAGAACGTATTTACGACAAGAAT
GAGTGGAAAACTACATTTCGGAAAATCGGAAATCGGAAACGAACAGGAAG
CGATGATTGGAATTTTAAACTGACCGATAAATTTCAGAGTCAAAATGATA
AGGACAGAGACTGGGGTTTTAAGTTTAATAAATTAGGTAGTGTAACGTTG
GGCGAAGATGATTGGAGGATACAAAAGAAACAAATGGATGTACGTAGTGA
TGATCGCTCGACACATTGGAAAACCAAATTTCAAAAAATACAAGAGAAAA
ATGAAGATCCAAAAGCATGGCAAACACAATTCCGTAAAATGGAACCTATA
CCGGAAGACCGGACATGGAAATCCGATATTGTTCCGATTTCTAATGATCT
AGGTACTGAAGCGGACTGGAATATAAAGTTTATTGATATTGAGAAAAACG
GTGAGCGGCCCGAGGATTGGAACATTGATATGAAAGATGTGCCGGATTCT
ACTCGCGATCCGGCAGATTGGAATATCAAGTTTAAACAACTAGAAGAACA
TCTATCTTTCCTCACCAAAGTCAAAGAACGTATTTACGACAAGAATGAGT
GGAAAACTACATTTCGGAAAATCGGAAATCGGAAACGAACAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_029079XLOC_029079Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00045502-proteinTCONS_00045502-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00045502-exon-sc0008099-1575043694:519..608TCONS_00045502-exon-sc0008099-1575043694:519..608Clytia hemisphaericaexon
TCONS_00045502-exon-sc0008099-1575043694:1..459TCONS_00045502-exon-sc0008099-1575043694:1..459Clytia hemisphaericaexon
TCONS_00045502-exon-sc0008099-1510915933:519..608TCONS_00045502-exon-sc0008099-1510915933:519..608Clytia hemisphaericaexon
TCONS_00045502-exon-sc0008099-1510915933:1..459TCONS_00045502-exon-sc0008099-1510915933:1..459Clytia hemisphaericaexon
TCONS_00045502-exon-sc0008099-1491911889:519..608TCONS_00045502-exon-sc0008099-1491911889:519..608Clytia hemisphaericaexon
TCONS_00045502-exon-sc0008099-1491911889:1..459TCONS_00045502-exon-sc0008099-1491911889:1..459Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0008099supercontigsc0008099:1..608 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
7.51293	9.46313	8.62467	9.47819	35.7421	27.2431	45.4781	45.0879	24.7085	35.18	31.715	22.5161	58.1551	42.4492	19.1382	24.4169	41.6728	43.757	51.3571	55.1344	54.1768	57.1323	25.4836	34.0455	47.8377	47.5933	74.6875	66.7292	19.1097	16.8738
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00045502 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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