TCONS_00045486 (transcript) - C. hemisphaerica

Overview
NameTCONS_00045486
Unique NameTCONS_00045486
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length515

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00045486 ID=TCONS_00045486|Name=TCONS_00045486|organism=Clytia hemisphaerica|type=transcript|length=515bp
AAAGTTTTAATGTCTTTGACAGTGAACTTGtaagcaaaaaattttttcca
aaccaAGTATTCATGGTCACTTTCTAAGTCTGTATCATCTACTATATAAT
TATCATTATCTTGCCCAAACCGTACCGGTGGAAAAGAAATTCGACACTTC
TTCATTGttgaaaaaatcttacaaaatctTTCCACATTCTTATCCGTGAA
ATGGAGAGCATTTACTGAGATTTCTGAAATGTATACTTTACCGACCAAAC
TTTTTAGGAGTTTAGGTGTCAGACGCATGGTGTAAAAATAACGAGAGTCA
ATAATTAATTCTTTGATGAATCCAGTTTCCAATGCTTTAAGTAGATCATT
GAAATCCTTTATTGAACAAATTTTCATTAACCTGGTATGAGCAACGATAG
GGAATTTCAAATCCGTCAAGTTCAGGGCGGGCATGAAAGCATATCCCATA
TCAACATTTAAACTTTTCAAACTGGGAACCATTTCAACTATTTGTGCCTG
ATAACATCGAAAATC
Run BLAST on NCBI

transcript from alignment at sc0008022:1..636+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00045486 ID=TCONS_00045486|Name=TCONS_00045486|organism=Clytia hemisphaerica|type=transcript|length=636bp|location=Sequence derived from alignment at sc0008022:1..636+ (Clytia hemisphaerica)
AAAGTTTTAATGTCTTTGACAGTGAACTTGtaagcaaaaaattttttcca
aaccaAGTATTCATGGTCACTTTCTAAGTCTGTATCATCTACTATATAAT
TATCATTATCTTGCCCAAACCGTACCGGTGGAAAAGAAATTCGACACTTC
TTCATTGttgaaaaaatcttacaaaatctTTCCACATTCTTATCCGTGAA
ATGGAGAGCATTTACTGAGATTTCTGAAATGTATACTTTACCGACCAAAC
TTTTTAGGAGTTTAGGTGTCAGACGCATGGTGTAAAAATAACGAGAGTCA
ATAATTAATTCTTTGATGAATCCAGTTTCCAATGCTTTAAGTAGATCATT
GAAATCCTTTATTGAACAAATTTTCATTAACCTGGTATGAGCAACGATAG
GGAATTTCAAATCCGTCAAGTTCAGGGCGGGCATGAAAGCATATCCCATA
TCAACATTTAANGAGATCATTGAAATCCTTTATTgaacaaattttcatta
atcTGGTATGAGCAACGATAGGGAATTTCAAAGCCGTCAAATCCATGGCG
GGCATGAAAGCATATCCCATATCAACATTTAAACTTTTCAAACTGGGAAC
CATTTCAACTATTTGTGCCTGATAACATCGAAAATC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_029063XLOC_029063Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00045486-exon-sc0008022-1491911889:1..455TCONS_00045486-exon-sc0008022-1491911889:1..455Clytia hemisphaericaexon
TCONS_00045486-exon-sc0008022-1510915933:1..455TCONS_00045486-exon-sc0008022-1510915933:1..455Clytia hemisphaericaexon
TCONS_00045486-exon-sc0008022-1575043694:1..455TCONS_00045486-exon-sc0008022-1575043694:1..455Clytia hemisphaericaexon
TCONS_00045486-exon-sc0008022-1491911889:577..636TCONS_00045486-exon-sc0008022-1491911889:577..636Clytia hemisphaericaexon
TCONS_00045486-exon-sc0008022-1510915933:577..636TCONS_00045486-exon-sc0008022-1510915933:577..636Clytia hemisphaericaexon
TCONS_00045486-exon-sc0008022-1575043694:577..636TCONS_00045486-exon-sc0008022-1575043694:577..636Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0008022supercontigsc0008022:1..636 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
8.81147	5.76606	3.54439	2.31175	0.625408	0.494206	0.596238	0.697739	0.390803	0.363054	1.29209	0.617725	0.308433	0.640622	0.395009	0.353254	0.261108	0.535254	0	0.257939	0.784684	0.328064	19.5414	16.4366	0.99584	2.55519	0.317954	1.18765	12.0964	15.7331
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00045486 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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