TCONS_00045480 (transcript) - C. hemisphaerica

Overview
NameTCONS_00045480
Unique NameTCONS_00045480
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length604

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00045480 ID=TCONS_00045480|Name=TCONS_00045480|organism=Clytia hemisphaerica|type=transcript|length=604bp
TTACCAGATGTAGAATGACTTTGATAGCATCACGATTCGGGTTATCCAAA
AACTCATGTAAAGCTTTGGTTAATGACTGCGTTTGACGATTTAACATGCT
GTTTTGACCATACAATACAAATCCAGCCCAATGTGTAGGATGTTTAAATT
CATCTGAAGTTTGCATAGCATGTACAGTCTGTTGAAAAGCCTCATAAGCT
GGAATCCCTTTGTTGTACTGCTGGTAGAAACCTTGGAAGAATCGACGGCG
TGCATTGTCTGCTACTGGCCATGTTGATGTAATGAGCGTTTTGCAACCGG
CCATTTGTAAGGAAATCATAAGAAGATATAAACCATCAGCACAGATTGGG
TCTGTATATTCACTTGGTGAAGAGATACCATACATGACGAGACTCGTTTT
CAAATTCATTTCATAGATGTCTTTAGCTGTAATAAACACATCGGATAAAC
CGGGTGACCCGGCTCTTGAATCGGGTTCCAAATCTTCAATATCGGGATCA
GCGCTAAAGTTACGTGACCGAACAGCATCTTTGGTGATGACTTTACACGG
AAACACAAATGATGGTGTTTGCCAGGCAACATCTGATGAAAGATGGCAGA
CAAT
Run BLAST on NCBI

protein sequence of TCONS_00045480-protein

>TCONS_00045480-protein ID=TCONS_00045480-protein|Name=TCONS_00045480-protein|organism=Clytia hemisphaerica|type=polypeptide|length=201bp
IVCHLSSDVAWQTPSFVFPCKVITKDAVRSRNFSADPDIEDLEPDSRAGS
PGLSDVFITAKDIYEMNLKTSLVMYGISSPSEYTDPICADGLYLLMISLQ
MAGCKTLITSTWPVADNARRRFFQGFYQQYNKGIPAYEAFQQTVHAMQTS
DEFKHPTHWAGFVLYGQNSMLNRQTQSLTKALHEFLDNPNRDAIKVILHL
V
Run BLAST on NCBI

transcript from alignment at sc0007994:1..604

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00045480 ID=TCONS_00045480|Name=TCONS_00045480|organism=Clytia hemisphaerica|type=transcript|length=604bp|location=Sequence derived from alignment at sc0007994:1..604 (Clytia hemisphaerica)
ATTGTCTGCCATCTTTCATCAGATGTTGCCTGGCAAACACCATCATTTGT
GTTTCCGTGTAAAGTCATCACCAAAGATGCTGTTCGGTCACGTAACTTTA
GCGCTGATCCCGATATTGAAGATTTGGAACCCGATTCAAGAGCCGGGTCA
CCCGGTTTATCCGATGTGTTTATTACAGCTAAAGACATCTATGAAATGAA
TTTGAAAACGAGTCTCGTCATGTATGGTATCTCTTCACCAAGTGAATATA
CAGACCCAATCTGTGCTGATGGTTTATATCTTCTTATGATTTCCTTACAA
ATGGCCGGTTGCAAAACGCTCATTACATCAACATGGCCAGTAGCAGACAA
TGCACGCCGTCGATTCTTCCAAGGTTTCTACCAGCAGTACAACAAAGGGA
TTCCAGCTTATGAGGCTTTTCAACAGACTGTACATGCTATGCAAACTTCA
GATGAATTTAAACATCCTACACATTGGGCTGGATTTGTATTGTATGGTCA
AAACAGCATGTTAAATCGTCAAACGCAGTCATTAACCAAAGCTTTACATG
AGTTTTTGGATAACCCGAATCGTGATGCTATCAAAGTCATTCTACATCTG
GTAA

Coding sequence (CDS) from alignment at sc0007994:1..604

>TCONS_00045480 ID=TCONS_00045480|Name=TCONS_00045480|organism=Clytia hemisphaerica|type=CDS|length=603bp|location=Sequence derived from alignment at sc0007994:1..604 (Clytia hemisphaerica)
ATTGTCTGCCATCTTTCATCAGATGTTGCCTGGCAAACACCATCATTTGT
GTTTCCGTGTAAAGTCATCACCAAAGATGCTGTTCGGTCACGTAACTTTA
GCGCTGATCCCGATATTGAAGATTTGGAACCCGATTCAAGAGCCGGGTCA
CCCGGTTTATCCGATGTGTTTATTACAGCTAAAGACATCTATGAAATGAA
TTTGAAAACGAGTCTCGTCATGTATGGTATCTCTTCACCAAGTGAATATA
CAGACCCAATCTGTGCTGATGGTTTATATCTTCTTATGATTTCCTTACAA
ATGGCCGGTTGCAAAACGCTCATTACATCAACATGGCCAGTAGCAGACAA
TGCACGCCGTCGATTCTTCCAAGGTTTCTACCAGCAGTACAACAAAGGGA
TTCCAGCTTATGAGGCTTTTCAACAGACTGTACATGCTATGCAAACTTCA
GATGAATTTAAACATCCTACACATTGGGCTGGATTTGTATTGTATGGTCA
AAACAGCATGTTAAATCGTCAAACGCAGTCATTAACCAAAGCTTTACATG
AGTTTTTGGATAACCCGAATCGTGATGCTATCAAAGTCATTCTACATCTG
GTA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_029057XLOC_029057Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00045480-exon-sc0007994-1491911889:1..604TCONS_00045480-exon-sc0007994-1491911889:1..604Clytia hemisphaericaexon
TCONS_00045480-exon-sc0007994-1510915933:1..604TCONS_00045480-exon-sc0007994-1510915933:1..604Clytia hemisphaericaexon
TCONS_00045480-exon-sc0007994-1575043694:1..604TCONS_00045480-exon-sc0007994-1575043694:1..604Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00045480-proteinTCONS_00045480-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0007994supercontigsc0007994:1..604 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.94044	3.35469	1.35817	0.528266	3.06601	3.14076	4.85273	6.41978	2.9698	4.9646	3.9264	1.59778	9.72174	6.91552	8.52141	10.834	7.24554	10.0112	10.1224	9.2394	6.70368	5.81217	5.10699	4.17489	4.94252	6.05161	12.9054	8.07165	22.4679	22.8713
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR024983CHAT_dom
Blast
[Close]
BLAST of TCONS_00045480 vs. Swiss-Prot (Human)
Match: TTC28 (Tetratricopeptide repeat protein 28 OS=Homo sapiens GN=TTC28 PE=1 SV=4)

HSP 1 Score: 105.531 bits (262), Expect = 1.842e-25
Identity = 62/208 (29.81%), Postives = 104/208 (50.00%), Query Frame = -1 
Query:    2 HLSSDVAWQTPSFVFPCKVITKDAVRSRNFS---ADPDIEDLEPDSRAGS-----PGLSDVFITAKDIYEMNLKTSLVMYGISSPSEYTDPICADGLYLLMISLQMAGCKTLITSTWPVADNARRRFFQGFYQQYNKGIPAYEAFQQTVHAMQTSDEFKHPTHWAGFVLYGQNSMLNRQTQSLTKALHEFLDNPN--RDAIKVILHLV 595
            H ++ ++W+  + V    +    A    +F      P+   ++ D+  G      P L ++ +TA D+ ++ L   LV+ G  S  E    + ADG+  L  +   AG + ++ S WPV   A + F   FY     G+ A  A  + +  +Q+S  F HP++WAGF+L G +  LN  +  + +AL E L +P   RDA++V+LHLV
Sbjct: 1544 HFATHISWKLSALVLTPSMDGNPASSKSSFGHPYTIPESLRVQDDASDGESISDCPPLQELLLTAADVLDLQLPVKLVVLG--SSQESNSKVTADGVIALTRAFLAAGAQCVLVSLWPVPVAASKMFIHAFYSSLLNGLKASAALGEAMKVVQSSKAFSHPSNWAGFMLIGSDVKLNSPSSLIGQALTEILQHPERARDALRVLLHLV 1749
The following BLAST results are available for this feature:
BLAST of TCONS_00045480 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
TTC281.842e-2529.81Tetratricopeptide repeat protein 28 OS=Homo sapien... [more]
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