TCONS_00045480-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00045480-protein
Unique NameTCONS_00045480-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length201

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00045480-protein ID=TCONS_00045480-protein|Name=TCONS_00045480-protein|organism=Clytia hemisphaerica|type=polypeptide|length=201bp
IVCHLSSDVAWQTPSFVFPCKVITKDAVRSRNFSADPDIEDLEPDSRAGS
PGLSDVFITAKDIYEMNLKTSLVMYGISSPSEYTDPICADGLYLLMISLQ
MAGCKTLITSTWPVADNARRRFFQGFYQQYNKGIPAYEAFQQTVHAMQTS
DEFKHPTHWAGFVLYGQNSMLNRQTQSLTKALHEFLDNPNRDAIKVILHL
V
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_029057XLOC_029057Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00045480TCONS_00045480Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR024983CHAT_dom
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR024983CHAT domainPFAMPF12770CHATcoord: 48..167
e-value: 2.7E-19
score: 69.6
NoneNo IPR availableGENE3D3.40.50.1460coord: 36..171
e-value: 8.7E-12
score: 44.7

Blast
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BLAST of TCONS_00045480-protein vs. Swiss-Prot (Human)
Match: TTC28 (Tetratricopeptide repeat protein 28 OS=Homo sapiens GN=TTC28 PE=1 SV=4)

HSP 1 Score: 105.531 bits (262), Expect = 2.040e-26
Identity = 62/208 (29.81%), Postives = 104/208 (50.00%), Query Frame = 0 
Query:    4 HLSSDVAWQTPSFVFPCKVITKDAVRSRNFS---ADPDIEDLEPDSRAGS-----PGLSDVFITAKDIYEMNLKTSLVMYGISSPSEYTDPICADGLYLLMISLQMAGCKTLITSTWPVADNARRRFFQGFYQQYNKGIPAYEAFQQTVHAMQTSDEFKHPTHWAGFVLYGQNSMLNRQTQSLTKALHEFLDNPN--RDAIKVILHLV 201
            H ++ ++W+  + V    +    A    +F      P+   ++ D+  G      P L ++ +TA D+ ++ L   LV+ G  S  E    + ADG+  L  +   AG + ++ S WPV   A + F   FY     G+ A  A  + +  +Q+S  F HP++WAGF+L G +  LN  +  + +AL E L +P   RDA++V+LHLV
Sbjct: 1544 HFATHISWKLSALVLTPSMDGNPASSKSSFGHPYTIPESLRVQDDASDGESISDCPPLQELLLTAADVLDLQLPVKLVVLG--SSQESNSKVTADGVIALTRAFLAAGAQCVLVSLWPVPVAASKMFIHAFYSSLLNGLKASAALGEAMKVVQSSKAFSHPSNWAGFMLIGSDVKLNSPSSLIGQALTEILQHPERARDALRVLLHLV 1749
The following BLAST results are available for this feature:
BLAST of TCONS_00045480-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
TTC282.040e-2629.81Tetratricopeptide repeat protein 28 OS=Homo sapien... [more]
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