TCONS_00045458 (transcript) - C. hemisphaerica

Overview
NameTCONS_00045458
Unique NameTCONS_00045458
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length404

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00045458 ID=TCONS_00045458|Name=TCONS_00045458|organism=Clytia hemisphaerica|type=transcript|length=404bp
TTTCAGGAATATCTGCTAATTTGCTGTAAAAAATCCATTCTCCGTCTCAG
ACGAAatccttgctttgaccactgggTTTTTGTCTCTCTTCTACAGCAGA
GCCCATGAAGTATGTCTTCTTCAGAAGAAGGTCTCAATTTGGTATCATGA
ACGATTGTAAAGTCAACAGCAAGGCAGCACACAATCATTTTTACCGTTAT
TCAGACGTCAGAGTGAAAGGTATTTGACACAAATTTTTATGACAAGAGAC
CTGGGTACTATTACTCTGATAAAAGGGGTTGTAGTTTTACAATCATAGAT
TAGAGATATCAGTTATAGTTTCACGGCTACAGTACCAGGATGCCAAGCGC
CTGAGAACAAAGTAATTTATCTAATTCTCAATGCCATTATGTCAATGTTT
TGCT
Run BLAST on NCBI

transcript from alignment at sc0007898:2..405

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00045458 ID=TCONS_00045458|Name=TCONS_00045458|organism=Clytia hemisphaerica|type=transcript|length=404bp|location=Sequence derived from alignment at sc0007898:2..405 (Clytia hemisphaerica)
AGCAAAACATTGACATAATGGCATTGAGAATTAGATAAATTACTTTGTTC
TCAGGCGCTTGGCATCCTGGTACTGTAGCCGTGAAACTATAACTGATATC
TCTAATCTATGATTGTAAAACTACAACCCCTTTTATCAGAGTAATAGTAC
CCAGGTCTCTTGTCATAAAAATTTGTGTCAAATACCTTTCACTCTGACGT
CTGAATAACGGTAAAAATGATTGTGTGCTGCCTTGCTGTTGACTTTACAA
TCGTTCATGATACCAAATTGAGACCTTCTTCTGAAGAAGACATACTTCAT
GGGCTCTGCTGTAGAAGAGAGACAAAAAcccagtggtcaaagcaaggatT
TCGTCTGAGACGGAGAATGGATTTTTTACAGCAAATTAGCAGATATTCCT
GAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_029035XLOC_029035Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00045458-exon-sc0007898-1491911889:2..405TCONS_00045458-exon-sc0007898-1491911889:2..405Clytia hemisphaericaexon
TCONS_00045458-exon-sc0007898-1510915933:2..405TCONS_00045458-exon-sc0007898-1510915933:2..405Clytia hemisphaericaexon
TCONS_00045458-exon-sc0007898-1575043694:2..405TCONS_00045458-exon-sc0007898-1575043694:2..405Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0007898supercontigsc0007898:2..405 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
13.0995	12.0644	5.14996	4.63536	12.0223	8.53075	7.71899	8.32134	7.97238	13.2934	11.7969	10.5417	7.74404	5.78038	8.26479	11.3085	12.8385	12.1791	5.8021	6.07148	9.32308	8.75174	17.1057	12.1378	6.44615	5.0557	5.73785	5.59111	12.1162	13.9904
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00045458 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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