TCONS_00045426 (transcript) - C. hemisphaerica

Overview
NameTCONS_00045426
Unique NameTCONS_00045426
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length604

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00045426 ID=TCONS_00045426|Name=TCONS_00045426|organism=Clytia hemisphaerica|type=transcript|length=604bp
CAAGCTGTTTTCTTCGTGCCCAGGAAGCACACAAGACGTTTTCTTCGTGT
CCAGGAAGCACACAAGTTGAAACAGGATTGGGAAATTGATACACGTTGAT
GAACAATTGATTGAGTTGATGTAGATTATCTTCTTTTATGGTGAGCAGAG
GAATTCCGATGCAGTTGATCTTCTTTCTTCATGCCCAGGAAGCACACAAA
TTTAAACAGTATGAACGCAAACATTGGTTAGTTGACTTTAGCAGCTGGTT
GATTCCAGCTCCAATCTTGAAATCTTTGTAGTTGGTCGAGTGTATGTACC
GTCCTTTGTGGTGACTTCAACCTTTCGTACTTCTCCATCTGAACTTTTGA
ATACTTCTTTGATTCGTCCAAGGGTCCATTGACTTCGGACAAGATTCTTC
TCAAGCATCATCACCAAGTNGTGACTTCAACCTTTCGTACTTCTCCATCT
GAACTTTTGAATACTTCTTTGATTCGTCCAAGGGTCCATTGACTTCGGAC
AAGATTCTTCTCAAGCATCACCACCAAGTCACCTTCCTTCGGTGCAGGAG
TACTTGTCTTTCGCCATTTTGTTCTAGTGGTCAATGTCGCAAGATACTCT
TTCG
Run BLAST on NCBI

transcript from alignment at sc0007785:29..632

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00045426 ID=TCONS_00045426|Name=TCONS_00045426|organism=Clytia hemisphaerica|type=transcript|length=604bp|location=Sequence derived from alignment at sc0007785:29..632 (Clytia hemisphaerica)
CGAAAGAGTATCTTGCGACATTGACCACTAGAACAAAATGGCGAAAGACA
AGTACTCCTGCACCGAAGGAAGGTGACTTGGTGGTGATGCTTGAGAAGAA
TCTTGTCCGAAGTCAATGGACCCTTGGACGAATCAAAGAAGTATTCAAAA
GTTCAGATGGAGAAGTACGAAAGGTTGAAGTCACNACTTGGTGATGATGC
TTGAGAAGAATCTTGTCCGAAGTCAATGGACCCTTGGACGAATCAAAGAA
GTATTCAAAAGTTCAGATGGAGAAGTACGAAAGGTTGAAGTCACCACAAA
GGACGGTACATACACTCGACCAACTACAAAGATTTCAAGATTGGAGCTGG
AATCAACCAGCTGCTAAAGTCAACTAACCAATGTTTGCGTTCATACTGTT
TAAATTTGTGTGCTTCCTGGGCATGAAGAAAGAAGATCAACTGCATCGGA
ATTCCTCTGCTCACCATAAAAGAAGATAATCTACATCAACTCAATCAATT
GTTCATCAACGTGTATCAATTTCCCAATCCTGTTTCAACTTGTGTGCTTC
CTGGACACGAAGAAAACGTCTTGTGTGCTTCCTGGGCACGAAGAAAACAG
CTTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_029004XLOC_029004Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00045426-exon-sc0007785-1491911889:29..632TCONS_00045426-exon-sc0007785-1491911889:29..632Clytia hemisphaericaexon
TCONS_00045426-exon-sc0007785-1510915933:29..632TCONS_00045426-exon-sc0007785-1510915933:29..632Clytia hemisphaericaexon
TCONS_00045426-exon-sc0007785-1575043694:29..632TCONS_00045426-exon-sc0007785-1575043694:29..632Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0007785supercontigsc0007785:29..632 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.93748	0.984823	0.610173	0.497466	0.737916	0.478566	0.230948	0.864843	0.378436	0.187501	0.293621	0.119635	0.238938	0.12407	0.0510011	0.109464	0.606828	0.138218	0.76382	0.199821	0.0868402	0.508292	0.205965	0.187252	0.482163	0.602447	0.123157	0.39431	0.0996899	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00045426 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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