TCONS_00045402 (transcript) - C. hemisphaerica

Overview
NameTCONS_00045402
Unique NameTCONS_00045402
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length759

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00045402 ID=TCONS_00045402|Name=TCONS_00045402|organism=Clytia hemisphaerica|type=transcript|length=759bp
TTTATATGGTTAAGCTTATATATTCGTCCTATTCAATGTATATAAAGTTA
TCAAAATACATTTTGATAAATTATTCAAGAGCAGCTTTCCGAATATAGCT
CTTGTCCAAGACAATATGTATGAACTTTTTGAATTATGTGCTTGTAAACA
CGCTTCATTATAGCCATAGTATTGTTCATCGACCATCTGATCTACTTGAA
TGTAATTGATGCAACTGTGCATTCTGGGTCCcgttcaaaattttgattac
aGCTTCTAAACTGACGTATAATTCAACATCCCAGTATTTGCAAAAATAAT
GCCTTCATGGTTTTTTCGTAATTGAGTGATAGCCAGTCAATAAAATATTA
GCGTCAATAACTTGGTAACATTTTCTGCTCTGTTTCGTTTCAGTGTTGCa
aaaaaggcttcaaaaacagGACTGAAGTGTCAAGGACAGCTACAGATATC
CTAAAACTTTCATTGTCatatcattttttgaaagtcaacaaCAGCGAAGA
TGGTTGAAGCTGTACCTGGAATGATATACGAAAATAATGTTCCCATAATG
CATGCagcatttataatcaaataatgctATACTATATATTTGACTGGTTA
TAGTACCAGCCTGGTAAGATACCAGATACCAGTTCAAGGCATTTCAAAAG
CAAGGTCTGGaagtaatacacgtttttttaagaaactagttttaccaagc
aggctcaatgtttcttaagaaatcggccttttgagccttaaatgtttctt
acatgtttc
Run BLAST on NCBI

transcript from alignment at sc0007729:5..763

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00045402 ID=TCONS_00045402|Name=TCONS_00045402|organism=Clytia hemisphaerica|type=transcript|length=759bp|location=Sequence derived from alignment at sc0007729:5..763 (Clytia hemisphaerica)
gaaacatgtaagaaacatttaaggctcaaaaggccgatttcttaagaaac
attgagcctgcttggtaaaactagtttcttaaaaaaacgtgtattacttC
CAGACCTTGCTTTTGAAATGCCTTGAACTGGTATCTGGTATCTTACCAGG
CTGGTACTATAACCAGTCAAATATATAGTATagcattatttgattataaa
tgctGCATGCATTATGGGAACATTATTTTCGTATATCATTCCAGGTACAG
CTTCAACCATCTTCGCTGttgttgactttcaaaaaatgatatGACAATGA
AAGTTTTAGGATATCTGTAGCTGTCCTTGACACTTCAGTCctgtttttga
agccttttttGCAACACTGAAACGAAACAGAGCAGAAAATGTTACCAAGT
TATTGACGCTAATATTTTATTGACTGGCTATCACTCAATTACGAAAAAAC
CATGAAGGCATTATTTTTGCAAATACTGGGATGTTGAATTATACGTCAGT
TTAGAAGCtgtaatcaaaattttgaacgGGACCCAGAATGCACAGTTGCA
TCAATTACATTCAAGTAGATCAGATGGTCGATGAACAATACTATGGCTAT
AATGAAGCGTGTTTACAAGCACATAATTCAAAAAGTTCATACATATTGTC
TTGGACAAGAGCTATATTCGGAAAGCTGCTCTTGAATAATTTATCAAAAT
GTATTTTGATAACTTTATATACATTGAATAGGACGAATATATAAGCTTAA
CCATATAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_028982XLOC_028982Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00045402-exon-sc0007729-1491911889:5..763TCONS_00045402-exon-sc0007729-1491911889:5..763Clytia hemisphaericaexon
TCONS_00045402-exon-sc0007729-1510915933:5..763TCONS_00045402-exon-sc0007729-1510915933:5..763Clytia hemisphaericaexon
TCONS_00045402-exon-sc0007729-1575043694:5..763TCONS_00045402-exon-sc0007729-1575043694:5..763Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0007729supercontigsc0007729:5..763 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3.35897	3.65502	1.251	0.721888	22.5793	15.8101	16.477	17.0367	7.62156	9.63457	9.58063	6.92651	10.991	17.5664	11.6774	10.2965	9.44638	13.6736	8.37802	8.11119	7.67885	7.82915	15.9212	13.761	10.6708	15.1107	9.94148	11.1046	13.0125	15.2594
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00045402 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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