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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00045387 ID=TCONS_00045387|Name=TCONS_00045387|organism=Clytia hemisphaerica|type=transcript|length=789bp
CTCGTGATTATCTTGCTGCTGCATTTCCTGAGCTTAATGCTTGGGAGCGT
GCTGGTGCTGATGCTTCCTCTGCTGGTATGGTTGACGCCGGATTTGAGAA
TCAAAAAGAGCTTACTAAAATGCAACTGGACAATCAGAAAGAGATTGCCG
AGATGCAAAATGAGACTCAAAAAGAGATTGCTGGCATTCAGTCGGCGACT
TCACGCCAGAATACGAAAGACCAGGTATATGCACAAAATGAGATGCTTGC
TTATCAACAGAAGGAGTCTACTGCTCGCGTTGCGTCTATTATGGAAAACA
CCAATCTTTCCAAGCAACAGCAGGTTTCCGAGATTATGCGCCAAATGCTT
ACTCAAGCTCAAACGGCTGGTCAGTATTTTACCAATGACCAAATCAAAGA
AATGACTCGCAAGGTTAGTGCTGAGGTTGACTTAGTTCATCAGCAAACGC
AGAATCAGCGGTATGGCTCTTCTCATATTGGCGCTACTGCAAAGGATATT
TCTAATGTCGTCACTGATGCTGCTTCTGGTGtggttgatatttttcatgG
TATTGATAAAGCTGTTGCCGATACTTGGAACAATTTCTGGAAAGACGGTA
AAGCTGATGGTATTGGCTCTAATTTGTCTAGGAAATAACCGTCAGGATTG
ACACCCTCCCAATTGTATGTTTTCATGCCTCCAAATCTTGGAGGCTTTTT
TATGGTTCGTTCTTATTACCCTTCTGAATGTCACGCTGATTATTTTGACT
TTGAGCGTATCGAGGCTCTTAAACCTGCTATTGAGGCTT Run BLAST on NCBI protein sequence of TCONS_00045387-protein >TCONS_00045387-protein ID=TCONS_00045387-protein|Name=TCONS_00045387-protein|organism=Clytia hemisphaerica|type=polypeptide|length=211bp
RDYLAAAFPELNAWERAGADASSAGMVDAGFENQKELTKMQLDNQKEIAE
MQNETQKEIAGIQSATSRQNTKDQVYAQNEMLAYQQKESTARVASIMENT
NLSKQQQVSEIMRQMLTQAQTAGQYFTNDQIKEMTRKVSAEVDLVHQQTQ
NQRYGSSHIGATAKDISNVVTDAASGVVDIFHGIDKAVADTWNNFWKDGK
ADGIGSNLSRK Run BLAST on NCBI transcript from alignment at sc0007683:1..789 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00045387 ID=TCONS_00045387|Name=TCONS_00045387|organism=Clytia hemisphaerica|type=transcript|length=789bp|location=Sequence derived from alignment at sc0007683:1..789 (Clytia hemisphaerica)
AAGCCTCAATAGCAGGTTTAAGAGCCTCGATACGCTCAAAGTCAAAATAA
TCAGCGTGACATTCAGAAGGGTAATAAGAACGAACCATAAAAAAGCCTCC
AAGATTTGGAGGCATGAAAACATACAATTGGGAGGGTGTCAATCCTGACG
GTTATTTCCTAGACAAATTAGAGCCAATACCATCAGCTTTACCGTCTTTC
CAGAAATTGTTCCAAGTATCGGCAACAGCTTTATCAATACcatgaaaaat
atcaaccaCACCAGAAGCAGCATCAGTGACGACATTAGAAATATCCTTTG
CAGTAGCGCCAATATGAGAAGAGCCATACCGCTGATTCTGCGTTTGCTGA
TGAACTAAGTCAACCTCAGCACTAACCTTGCGAGTCATTTCTTTGATTTG
GTCATTGGTAAAATACTGACCAGCCGTTTGAGCTTGAGTAAGCATTTGGC
GCATAATCTCGGAAACCTGCTGTTGCTTGGAAAGATTGGTGTTTTCCATA
ATAGACGCAACGCGAGCAGTAGACTCCTTCTGTTGATAAGCAAGCATCTC
ATTTTGTGCATATACCTGGTCTTTCGTATTCTGGCGTGAAGTCGCCGACT
GAATGCCAGCAATCTCTTTTTGAGTCTCATTTTGCATCTCGGCAATCTCT
TTCTGATTGTCCAGTTGCATTTTAGTAAGCTCTTTTTGATTCTCAAATCC
GGCGTCAACCATACCAGCAGAGGAAGCATCAGCACCAGCACGCTCCCAAG
CATTAAGCTCAGGAAATGCAGCAGCAAGATAATCACGAG Coding sequence (CDS) from alignment at sc0007683:1..789 >TCONS_00045387 ID=TCONS_00045387|Name=TCONS_00045387|organism=Clytia hemisphaerica|type=CDS|length=636bp|location=Sequence derived from alignment at sc0007683:1..789 (Clytia hemisphaerica)
TTATTTCCTAGACAAATTAGAGCCAATACCATCAGCTTTACCGTCTTTCC
AGAAATTGTTCCAAGTATCGGCAACAGCTTTATCAATACcatgaaaaata
tcaaccaCACCAGAAGCAGCATCAGTGACGACATTAGAAATATCCTTTGC
AGTAGCGCCAATATGAGAAGAGCCATACCGCTGATTCTGCGTTTGCTGAT
GAACTAAGTCAACCTCAGCACTAACCTTGCGAGTCATTTCTTTGATTTGG
TCATTGGTAAAATACTGACCAGCCGTTTGAGCTTGAGTAAGCATTTGGCG
CATAATCTCGGAAACCTGCTGTTGCTTGGAAAGATTGGTGTTTTCCATAA
TAGACGCAACGCGAGCAGTAGACTCCTTCTGTTGATAAGCAAGCATCTCA
TTTTGTGCATATACCTGGTCTTTCGTATTCTGGCGTGAAGTCGCCGACTG
AATGCCAGCAATCTCTTTTTGAGTCTCATTTTGCATCTCGGCAATCTCTT
TCTGATTGTCCAGTTGCATTTTAGTAAGCTCTTTTTGATTCTCAAATCCG
GCGTCAACCATACCAGCAGAGGAAGCATCAGCACCAGCACGCTCCCAAGC
ATTAAGCTCAGGAAATGCAGCAGCAAGATAATCACG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00045387-exon-sc0007683-1491911889:1..789 | TCONS_00045387-exon-sc0007683-1491911889:1..789 | Clytia hemisphaerica | exon |
| TCONS_00045387-exon-sc0007683-1510915933:1..789 | TCONS_00045387-exon-sc0007683-1510915933:1..789 | Clytia hemisphaerica | exon |
| TCONS_00045387-exon-sc0007683-1575043694:1..789 | TCONS_00045387-exon-sc0007683-1575043694:1..789 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0007683 | supercontig | sc0007683:1..789 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR006777 | Microvir_H |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0046718 | viral entry into host cell |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0019028 | viral capsid |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0046718 |
viral entry into host cell |
| cellular_component |
GO:0019028 |
viral capsid |
Blast
The following BLAST results are available for this feature:
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