TCONS_00045377 (transcript) - C. hemisphaerica

Overview
NameTCONS_00045377
Unique NameTCONS_00045377
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length798

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00045377 ID=TCONS_00045377|Name=TCONS_00045377|organism=Clytia hemisphaerica|type=transcript|length=798bp
TTTTAATAACAATCTTATGTAtcatctaaaaatattttccaatatAAAGT
TTGTcaataaataatgtttttgcttTGGGGCCATTTTAAAAAGCGTGTAC
GCTCTGAGCAGGAAGGGGGTCCCTCGAAAAGCGTTCGCGGGGAGGGGTGA
ATCAAGAAATTCCACGTACGCTttgcaaatttctttaattttaatCTTAA
ATTATATCATTCGAATCCAGACCGAACATTACTTGCGTCAGTCAAAACTT
GTTATGAACTAATTTCTTTCCAAGAGGGCCGGGTATTGTCAAAGCGTACA
AGGGGTGGTCAAATTTTGCTTACTTTTGAGCGTACATACTTATTGAATGG
CcgcttttaaaaataaaataagactTCGANTTCTTTCCAAGAGGGCCGGG
TATTCTCAAAGCGTACAAGGGGTGGTCAAATTTTGCTTACTTTTGAGCGT
ACATACTTATTGAATGGCcgcttttaaaaataaaataagactTCGCTAAT
ATGCATATAAAACGTACCAACGGAGCTTGTTTATCACTCAGATTAATATC
TCAACATGCAATAAACCACATCTGGGTAAGAGTCAGGCACGACAGAAGCT
TTTCAAATCTGGTACAGCAAATGAGGACATTATTGAGCAATTTTACCGAC
TAATAGGAAAATTTTGACGCTTTTTATGAAAATCTTGTATGGCAGTTACC
GTACCAAGTGCGCTGTGCCTGAAAAAGATTATCTACATTTtatacaaaac
aaaatgaaaaaaaaataactaaaatgctaaaaaatctCCTTTCATATG
Run BLAST on NCBI

transcript from alignment at sc0007644:10..807

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00045377 ID=TCONS_00045377|Name=TCONS_00045377|organism=Clytia hemisphaerica|type=transcript|length=798bp|location=Sequence derived from alignment at sc0007644:10..807 (Clytia hemisphaerica)
CATATGAAAGGagattttttagcattttagttatttttttttcattttgt
tttgtataAAATGTAGATAATCTTTTTCAGGCACAGCGCACTTGGTACGG
TAACTGCCATACAAGATTTTCATAAAAAGCGTCAAAATTTTCCTATTAGT
CGGTAAAATTGCTCAATAATGTCCTCATTTGCTGTACCAGATTTGAAAAG
CTTCTGTCGTGCCTGACTCTTACCCAGATGTGGTTTATTGCATGTTGAGA
TATTAATCTGAGTGATAAACAAGCTCCGTTGGTACGTTTTATATGCATAT
TAGCGAagtcttattttatttttaaaagcgGCCATTCAATAAGTATGTAC
GCTCAAAAGTAAGCAAAATTTGACCACCCCTTGTACGCTTTGAGAATACC
CGGCCCTCTTGGAAAGAANTCGAagtcttattttatttttaaaagcgGCC
ATTCAATAAGTATGTACGCTCAAAAGTAAGCAAAATTTGACCACCCCTTG
TACGCTTTGACAATACCCGGCCCTCTTGGAAAGAAATTAGTTCATAACAA
GTTTTGACTGACGCAAGTAATGTTCGGTCTGGATTCGAATGATATAATTT
AAGattaaaattaaagaaatttgcaaAGCGTACGTGGAATTTCTTGATTC
ACCCCTCCCCGCGAACGCTTTTCGAGGGACCCCCTTCCTGCTCAGAGCGT
ACACGCTTTTTAAAATGGCCCCAaagcaaaaacattatttattgACAAAC
TTTatattggaaaatatttttagatgaTACATAAGATTGTTATTAAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_028957XLOC_028957Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00045377-exon-sc0007644-1491911889:10..807TCONS_00045377-exon-sc0007644-1491911889:10..807Clytia hemisphaericaexon
TCONS_00045377-exon-sc0007644-1510915933:10..807TCONS_00045377-exon-sc0007644-1510915933:10..807Clytia hemisphaericaexon
TCONS_00045377-exon-sc0007644-1575043694:10..807TCONS_00045377-exon-sc0007644-1575043694:10..807Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0007644supercontigsc0007644:10..807 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0.128376	0.435922	1.11726	0.738935	0.0628719	0	0.869804	0.240358	0.0569015	0.497348	0.190653	0.0904347	0.0463463	0.479582	0.160992	0.213966	0.446284	0	0	0	0	0.993714	0.916435	0.483792	0.777392
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00045377 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top