TCONS_00045365 (transcript) - C. hemisphaerica

Overview
NameTCONS_00045365
Unique NameTCONS_00045365
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length691

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00045365 ID=TCONS_00045365|Name=TCONS_00045365|organism=Clytia hemisphaerica|type=transcript|length=691bp
CAGCCAAACAAGCAATGGAAGCTGGTTCACAGGAAATGAAATCGCTCAAT
CTTTCTGGATTGGATTTAACGCCCATCGATAAAAAGAGCTCAAATTTCAA
CTTAAACGTTACTCGAATGACGCCCAAGTCATGGACACCCTACCGCCCAA
ATCGATACGAACGATCCGCCTCTCTCGGAAGTGCCGCCTCGTCATCCGAT
AATATCGATTATGATGAATCGAGTGATTCGATGAGTTTATCCACGAGCAC
GGGACCTTCGACTCCTCTTTCTCGACCTTCTTCACGAATTGAGTATACTC
CGAACATGAGAAAATCGAGCGCTGATAATAATAACAGTAAATTGCTCGGC
TCCCTCGCTACAATGAACTCTAAAAATAATCGGCGATTGAGTCTGATTGA
ACGCCAAGCTATTTacgctgaaaaaaagaaaatggcgCAAGCTTATGAAG
ATCGCAAATTTTAAAAGCTTGTGCTTGTGTAGTTTAATTGCTAACTGAGA
GTGTTTAGTTGTGTCGTTGTTTTTTGAACCGTTCAAGTTTTCTTGAAGAT
TTGGCCCACACCGTTTATTTGTTGtgaaaatttggtgttttgTACATATG
GTTGATTTTGATTGTCGGCCTTCTTTCTTGACTTTTATGTCGCTCTTTCG
ACACTTAAGACAGTTTACGAAATGGAAAATTTCAGATAAAC
Run BLAST on NCBI

protein sequence of TCONS_00045365-protein

>TCONS_00045365-protein ID=TCONS_00045365-protein|Name=TCONS_00045365-protein|organism=Clytia hemisphaerica|type=polypeptide|length=153bp
AKQAMEAGSQEMKSLNLSGLDLTPIDKKSSNFNLNVTRMTPKSWTPYRPN
RYERSASLGSAASSSDNIDYDESSDSMSLSTSTGPSTPLSRPSSRIEYTP
NMRKSSADNNNSKLLGSLATMNSKNNRRLSLIERQAIYAEKKKMAQAYED
RKF
Run BLAST on NCBI

transcript from alignment at sc0007616:1..691

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00045365 ID=TCONS_00045365|Name=TCONS_00045365|organism=Clytia hemisphaerica|type=transcript|length=691bp|location=Sequence derived from alignment at sc0007616:1..691 (Clytia hemisphaerica)
GTTTATCTGAAATTTTCCATTTCGTAAACTGTCTTAAGTGTCGAAAGAGC
GACATAAAAGTCAAGAAAGAAGGCCGACAATCAAAATCAACCATATGTAc
aaaacaccaaattttcaCAACAAATAAACGGTGTGGGCCAAATCTTCAAG
AAAACTTGAACGGTTCAAAAAACAACGACACAACTAAACACTCTCAGTTA
GCAATTAAACTACACAAGCACAAGCTTTTAAAATTTGCGATCTTCATAAG
CTTGcgccattttctttttttcagcgtAAATAGCTTGGCGTTCAATCAGA
CTCAATCGCCGATTATTTTTAGAGTTCATTGTAGCGAGGGAGCCGAGCAA
TTTACTGTTATTATTATCAGCGCTCGATTTTCTCATGTTCGGAGTATACT
CAATTCGTGAAGAAGGTCGAGAAAGAGGAGTCGAAGGTCCCGTGCTCGTG
GATAAACTCATCGAATCACTCGATTCATCATAATCGATATTATCGGATGA
CGAGGCGGCACTTCCGAGAGAGGCGGATCGTTCGTATCGATTTGGGCGGT
AGGGTGTCCATGACTTGGGCGTCATTCGAGTAACGTTTAAGTTGAAATTT
GAGCTCTTTTTATCGATGGGCGTTAAATCCAATCCAGAAAGATTGAGCGA
TTTCATTTCCTGTGAACCAGCTTCCATTGCTTGTTTGGCTG

Coding sequence (CDS) from alignment at sc0007616:1..691

>TCONS_00045365 ID=TCONS_00045365|Name=TCONS_00045365|organism=Clytia hemisphaerica|type=CDS|length=462bp|location=Sequence derived from alignment at sc0007616:1..691 (Clytia hemisphaerica)
TTAAAATTTGCGATCTTCATAAGCTTGcgccattttctttttttcagcgt
AAATAGCTTGGCGTTCAATCAGACTCAATCGCCGATTATTTTTAGAGTTC
ATTGTAGCGAGGGAGCCGAGCAATTTACTGTTATTATTATCAGCGCTCGA
TTTTCTCATGTTCGGAGTATACTCAATTCGTGAAGAAGGTCGAGAAAGAG
GAGTCGAAGGTCCCGTGCTCGTGGATAAACTCATCGAATCACTCGATTCA
TCATAATCGATATTATCGGATGACGAGGCGGCACTTCCGAGAGAGGCGGA
TCGTTCGTATCGATTTGGGCGGTAGGGTGTCCATGACTTGGGCGTCATTC
GAGTAACGTTTAAGTTGAAATTTGAGCTCTTTTTATCGATGGGCGTTAAA
TCCAATCCAGAAAGATTGAGCGATTTCATTTCCTGTGAACCAGCTTCCAT
TGCTTGTTTGGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_028945XLOC_028945Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00045365-proteinTCONS_00045365-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00045365-exon-sc0007616-1491911889:1..691TCONS_00045365-exon-sc0007616-1491911889:1..691Clytia hemisphaericaexon
TCONS_00045365-exon-sc0007616-1510915933:1..691TCONS_00045365-exon-sc0007616-1510915933:1..691Clytia hemisphaericaexon
TCONS_00045365-exon-sc0007616-1575043694:1..691TCONS_00045365-exon-sc0007616-1575043694:1..691Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0007616supercontigsc0007616:1..691 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
52.0906	51.9302	73.2014	91.1371	231.31	178.758	150.222	152.91	77.2635	110.085	69.2296	61.0579	38.714	35.2111	36.1312	52.0302	24.2014	27.1272	19.2133	24.7702	15.1642	14.3977	64.0785	69.7657	27.4824	35.3661	111.025	117.678	59.6763	73.7503
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00045365 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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