TCONS_00045345 (transcript) - C. hemisphaerica

Overview
NameTCONS_00045345
Unique NameTCONS_00045345
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length531

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00045345 ID=TCONS_00045345|Name=TCONS_00045345|organism=Clytia hemisphaerica|type=transcript|length=531bp
ggaaaGAAACATTTGAATGAATGtctcaaaaattgatattttcttgtgaa
atttcttagcgtcacaGACTCAAACCCCCCACCCCTTCGCATAAATTTGA
CGTTAGTCTTGGGAAGAATTGATATGTGAGTGAGCCCTAATCGATTTGAT
TTATGTTTTAATTCATCTCTAAAATCCAACCTAAAATCTTATCATTTCTG
TTAGTCTTGATTAATCGAAACTATAATATCATCTCGTGTTGTAAGTTTTG
GGGGTAACGcaaataaaatgattttttgaaaaaagctatAAGGCTGTTCG
TAAAAAATTCCTTGGTTCCCGTCATTCCATCCATCAAAAAGTGGGTTGGT
CAGTCAATCGGgcagaaattatttttctgtttCAACAGACATCCGAGAGG
GCagaattttccttaaaaagggtggtaaaacaggtttttgatCGCCCTTA
GCCTCTTTTTCACTTTCGCTTCCATATGGTCCGCAATGAAAAATCGGAct
tgaaaatcgggaaaaaacaGAATTAACGGGT
Run BLAST on NCBI

transcript from alignment at sc0007576:15..545

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00045345 ID=TCONS_00045345|Name=TCONS_00045345|organism=Clytia hemisphaerica|type=transcript|length=531bp|location=Sequence derived from alignment at sc0007576:15..545 (Clytia hemisphaerica)
ACCCGTTAATTCtgttttttcccgattttcaagTCCGATTTTTCATTGCG
GACCATATGGAAGCGAAAGTGAAAAAGAGGCTAAGGGCGatcaaaaacct
gttttaccaccctttttaaggaaaattctGCCCTCTCGGATGTCTGTTGa
aacagaaaaataatttctgcCCGATTGACTGACCAACCCACTTTTTGATG
GATGGAATGACGGGAACCAAGGAATTTTTTACGAACAGCCTTatagcttt
tttcaaaaaatcattttatttgCGTTACCCCCAAAACTTACAACACGAGA
TGATATTATAGTTTCGATTAATCAAGACTAACAGAAATGATAAGATTTTA
GGTTGGATTTTAGAGATGAATTAAAACATAAATCAAATCGATTAGGGCTC
ACTCACATATCAATTCTTCCCAAGACTAACGTCAAATTTATGCGAAGGGG
TGGGGGGTTTGAGTCtgtgacgctaagaaatttcacaagaaaatatcaat
ttttgagaCATTCATTCAAATGTTTCtttcc
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_028926XLOC_028926Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00045345-exon-sc0007576-1491911889:15..545TCONS_00045345-exon-sc0007576-1491911889:15..545Clytia hemisphaericaexon
TCONS_00045345-exon-sc0007576-1510915933:15..545TCONS_00045345-exon-sc0007576-1510915933:15..545Clytia hemisphaericaexon
TCONS_00045345-exon-sc0007576-1575043694:15..545TCONS_00045345-exon-sc0007576-1575043694:15..545Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0007576supercontigsc0007576:15..545 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.110179	0.107442	1.24751	0.976392	0	0.587061	1.13322	0.530455	0.557076	0.575024	0.334879	0.0733788	0.439661	0.152197	0.250254	0.402841	0	0.0847763	0.351369	0	0.106528	0	0.126329	0	0.946357	0.633451	0.604311	0.161234	0.366871	0.124595
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00045345 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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