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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00045343 ID=TCONS_00045343|Name=TCONS_00045343|organism=Clytia hemisphaerica|type=transcript|length=840bp
ACCCACTACCACTGGTGATCAGACAAACCTAATCATCCCTACCAGGAGCA
ACAATCCGACCCCACCACTCAACAAACAGGCAACTGATCCACTACCACCC
CCACCACCTTCTAATAAATCAAAGGATAACGATATCCATCAAAACCACCC
AGCTTCAGTTAATCGAGACAAAGCACCCGTTTTCGGAAAGAAACCATCGA
AAGGAAACGTCATCACAGGTCAGTCAAAACCTCCCAAAACCTCTCTTTTC
GTTGGTGGCTTTAATCCACAACTACCAACTAACCAAATAAAATCCATTAT
CGAGGAAGACACATCAATTCAAATCCTAGGAATTCAACCTATAACCTGNG
TTGGTGGCTTTAATCCACAACTACCAACTAACCAAATAAAATCCATTATC
GAGGAAGACACATCAATTCAAATCCTAGGAATTCAACCTATCCATAACAA
TAGACATAATCAATCAGTTCGAATTGACATCAACGTAAGAGATAAGGAGA
AAGCATTTAATGCAAACACCTGGATAGAAGGATTAATAGTCAAACCGTAC
CGCCATAGAAGTAAACAATCTAACAGAAACAGAAAGATATACAATGAACA
GGACTACTACAACGGACAAGATTACCATGAACAAGCCCACCCCAACGGAC
AAGATTACCACGAACGAGCCCACTACGATGACTATGAACAACGAATTGCC
AACCCCAACAACAACTTTCAGACCAGGAACTCTCAATACGAAAATGAACC
ATGGCACTaaataaagtcaaaataatAACACTGAACTGTTATGGATTCAA
GTCCAACtgtaaatatatttcaaagCTTATAAGAGAAAAT Run BLAST on NCBI protein sequence of TCONS_00045343-protein >TCONS_00045343-protein ID=TCONS_00045343-protein|Name=TCONS_00045343-protein|organism=Clytia hemisphaerica|type=polypeptide|length=252bp
PTTTGDQTNLIIPTRSNNPTPPLNKQATDPLPPPPPSNKSKDNDIHQNHP
ASVNRDKAPVFGKKPSKGNVITGQSKPPKTSLFVGGFNPQLPTNQIKSII
EEDTSIQILGIQPITXVGGFNPQLPTNQIKSIIEEDTSIQILGIQPIHNN
RHNQSVRIDINVRDKEKAFNANTWIEGLIVKPYRHRSKQSNRNRKIYNEQ
DYYNGQDYHEQAHPNGQDYHERAHYDDYEQRIANPNNNFQTRNSQYENEP
WH Run BLAST on NCBI transcript from alignment at sc0007568:8..847 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00045343 ID=TCONS_00045343|Name=TCONS_00045343|organism=Clytia hemisphaerica|type=transcript|length=840bp|location=Sequence derived from alignment at sc0007568:8..847 (Clytia hemisphaerica)
ATTTTCTCTTATAAGctttgaaatatatttacaGTTGGACTTGAATCCAT
AACAGTTCAGTGTTattattttgactttatttAGTGCCATGGTTCATTTT
CGTATTGAGAGTTCCTGGTCTGAAAGTTGTTGTTGGGGTTGGCAATTCGT
TGTTCATAGTCATCGTAGTGGGCTCGTTCGTGGTAATCTTGTCCGTTGGG
GTGGGCTTGTTCATGGTAATCTTGTCCGTTGTAGTAGTCCTGTTCATTGT
ATATCTTTCTGTTTCTGTTAGATTGTTTACTTCTATGGCGGTACGGTTTG
ACTATTAATCCTTCTATCCAGGTGTTTGCATTAAATGCTTTCTCCTTATC
TCTTACGTTGATGTCAATTCGAACTGATTGATTATGTCTATTGTTATGGA
TAGGTTGAATTCCTAGGATTTGAATTGATGTGTCTTCCTCGATAATGGAT
TTTATTTGGTTAGTTGGTAGTTGTGGATTAAAGCCACCAACNCAGGTTAT
AGGTTGAATTCCTAGGATTTGAATTGATGTGTCTTCCTCGATAATGGATT
TTATTTGGTTAGTTGGTAGTTGTGGATTAAAGCCACCAACGAAAAGAGAG
GTTTTGGGAGGTTTTGACTGACCTGTGATGACGTTTCCTTTCGATGGTTT
CTTTCCGAAAACGGGTGCTTTGTCTCGATTAACTGAAGCTGGGTGGTTTT
GATGGATATCGTTATCCTTTGATTTATTAGAAGGTGGTGGGGGTGGTAGT
GGATCAGTTGCCTGTTTGTTGAGTGGTGGGGTCGGATTGTTGCTCCTGGT
AGGGATGATTAGGTTTGTCTGATCACCAGTGGTAGTGGGT Coding sequence (CDS) from alignment at sc0007568:8..847 >TCONS_00045343 ID=TCONS_00045343|Name=TCONS_00045343|organism=Clytia hemisphaerica|type=CDS|length=759bp|location=Sequence derived from alignment at sc0007568:8..847 (Clytia hemisphaerica)
ttAGTGCCATGGTTCATTTTCGTATTGAGAGTTCCTGGTCTGAAAGTTGT
TGTTGGGGTTGGCAATTCGTTGTTCATAGTCATCGTAGTGGGCTCGTTCG
TGGTAATCTTGTCCGTTGGGGTGGGCTTGTTCATGGTAATCTTGTCCGTT
GTAGTAGTCCTGTTCATTGTATATCTTTCTGTTTCTGTTAGATTGTTTAC
TTCTATGGCGGTACGGTTTGACTATTAATCCTTCTATCCAGGTGTTTGCA
TTAAATGCTTTCTCCTTATCTCTTACGTTGATGTCAATTCGAACTGATTG
ATTATGTCTATTGTTATGGATAGGTTGAATTCCTAGGATTTGAATTGATG
TGTCTTCCTCGATAATGGATTTTATTTGGTTAGTTGGTAGTTGTGGATTA
AAGCCACCAACNCAGGTTATAGGTTGAATTCCTAGGATTTGAATTGATGT
GTCTTCCTCGATAATGGATTTTATTTGGTTAGTTGGTAGTTGTGGATTAA
AGCCACCAACGAAAAGAGAGGTTTTGGGAGGTTTTGACTGACCTGTGATG
ACGTTTCCTTTCGATGGTTTCTTTCCGAAAACGGGTGCTTTGTCTCGATT
AACTGAAGCTGGGTGGTTTTGATGGATATCGTTATCCTTTGATTTATTAG
AAGGTGGTGGGGGTGGTAGTGGATCAGTTGCCTGTTTGTTGAGTGGTGGG
GTCGGATTGTTGCTCCTGGTAGGGATGATTAGGTTTGTCTGATCACCAGT
GGTAGTGGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00045343-exon-sc0007568-1491911889:8..847 | TCONS_00045343-exon-sc0007568-1491911889:8..847 | Clytia hemisphaerica | exon |
| TCONS_00045343-exon-sc0007568-1510915933:8..847 | TCONS_00045343-exon-sc0007568-1510915933:8..847 | Clytia hemisphaerica | exon |
| TCONS_00045343-exon-sc0007568-1575043694:8..847 | TCONS_00045343-exon-sc0007568-1575043694:8..847 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0007568 | supercontig | sc0007568:8..847 . |
Blast
The following BLAST results are available for this feature:
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