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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00045327 ID=TCONS_00045327|Name=TCONS_00045327|organism=Clytia hemisphaerica|type=transcript|length=762bpRun BLAST on NCBI protein sequence of TCONS_00045327-protein >TCONS_00045327-protein ID=TCONS_00045327-protein|Name=TCONS_00045327-protein|organism=Clytia hemisphaerica|type=polypeptide|length=254bp EKIKITKKKLYAMNKEIKDEQKVNSVSIKIGPEDAFLDFLGEEKHEFVDARun BLAST on NCBI transcript from alignment at sc0007513:111..872 Legend: exonCDS Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00045327 ID=TCONS_00045327|Name=TCONS_00045327|organism=Clytia hemisphaerica|type=transcript|length=762bp|location=Sequence derived from alignment at sc0007513:111..872 (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0007513:111..872 >TCONS_00045327 ID=TCONS_00045327|Name=TCONS_00045327|organism=Clytia hemisphaerica|type=CDS|length=762bp|location=Sequence derived from alignment at sc0007513:111..872 (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00045327 vs. Swiss-Prot (Human)
Match: ZN254 (Zinc finger protein 254 OS=Homo sapiens GN=ZNF254 PE=2 SV=3) HSP 1 Score: 148.673 bits (374), Expect = 1.248e-40 Identity = 70/128 (54.69%), Postives = 92/128 (71.88%), Query Frame = -1
Query: 4 RGQSFKCKECGKAFEFNCDLKRHFRIHTCERPFMCQDCGKCFAQSDGLTQHLIVHSSIKPFKCEECGKNFKTNGSLKKHIKLHTEKKSFKCEECGKCFKTNCSLKQHKTIHTKEKTFKCEECGNCFQR 387
R + +KC+ECGKAF ++ L RH R+HT E+P+ C++CGK F+QS LT H I+H+ KP+KCEECGK F + +L KH +HTE+K +KCE+CGK FK + L HK IHT EK +KCEECG F R
Sbjct: 458 REKPYKCEECGKAFIWSSTLTRHKRMHTGEKPYKCEECGKSFSQSSTLTTHKIIHTGEKPYKCEECGKAFNWSSTLTKHKIIHTEEKPYKCEKCGKAFKQSSILTNHKRIHTGEKPYKCEECGKSFNR 585 HSP 2 Score: 137.502 bits (345), Expect = 1.586e-36 Identity = 63/124 (50.81%), Postives = 90/124 (72.58%), Query Frame = -1
Query: 4 FKCKECGKAFEFNCDLKRHFRIHTCERPFMCQDCGKCFAQSDGLTQHLIVHSSIKPFKCEECGKNFKTNGSLKKHIKLHTEKKSFKCEECGKCFKTNCSLKQHKTIHTKEKTFKCEECGNCFQR 375
+KC+ECGKAF ++ L +H RIHT E+P+ C++CGK F S LT+H +H+ KP+KCEECGK+F + +L H +HT +K +KCEECGK F + +L +HK IHT+EK +KCE+CG F++
Sbjct: 434 YKCEECGKAFIWSSTLTKHKRIHTREKPYKCEECGKAFIWSSTLTRHKRMHTGEKPYKCEECGKSFSQSSTLTTHKIIHTGEKPYKCEECGKAFNWSSTLTKHKIIHTEEKPYKCEKCGKAFKQ 557 HSP 3 Score: 134.806 bits (338), Expect = 1.372e-35 Identity = 65/126 (51.59%), Postives = 86/126 (68.25%), Query Frame = -1
Query: 10 RGQSFKCKECGKAFEFNCDLKRHFRIHTCERPFMCQDCGKCFAQSDGLTQHLIVHSSIKPFKCEECGKNFKTNGSLKKHIKLHTEKKSFKCEECGKCFKTNCSLKQHKTIHTKEKTFKCEECGNCF 387
R + +KC+ECGKAF ++ L RH R+HT E+P+ C++CGK F+QS LT H I+H+ K +KC ECGK FK +L H +H +K +KCEECGK F + +L HK IHT EK +KCEECG F
Sbjct: 318 RKKPYKCEECGKAFIWSSTLTRHKRMHTGEKPYKCEECGKAFSQSSTLTTHKIIHTGEKRYKCLECGKAFKQLSTLTTHKIIHVGEKLYKCEECGKGFNRSSNLTTHKIIHTGEKPYKCEECGKAF 443 HSP 4 Score: 133.265 bits (334), Expect = 4.449e-35 Identity = 62/122 (50.82%), Postives = 84/122 (68.85%), Query Frame = -1
Query: 10 FKCKECGKAFEFNCDLKRHFRIHTCERPFMCQDCGKCFAQSDGLTQHLIVHSSIKPFKCEECGKNFKTNGSLKKHIKLHTEKKSFKCEECGKCFKTNCSLKQHKTIHTKEKTFKCEECGNCF 375
+KC+ECGK F + +L H IHT E+P+ C++CGK F S LT+H +H+ KP+KCEECGK F + +L +H ++HT +K +KCEECGK F + +L HK IHT EK +KCEECG F
Sbjct: 406 YKCEECGKGFNRSSNLTTHKIIHTGEKPYKCEECGKAFIWSSTLTKHKRIHTREKPYKCEECGKAFIWSSTLTRHKRMHTGEKPYKCEECGKSFSQSSTLTTHKIIHTGEKPYKCEECGKAF 527 HSP 5 Score: 131.724 bits (330), Expect = 1.881e-34 Identity = 61/124 (49.19%), Postives = 86/124 (69.35%), Query Frame = -1
Query: 4 FKCKECGKAFEFNCDLKRHFRIHTCERPFMCQDCGKCFAQSDGLTQHLIVHSSIKPFKCEECGKNFKTNGSLKKHIKLHTEKKSFKCEECGKCFKTNCSLKQHKTIHTKEKTFKCEECGNCFQR 375
+KC+ECG+AF + +L H IHT E+P+ C++CGK F S LT+H +H+ KP+KCEECGK F + +L +H ++HT +K +KCEECGK F + +L HK IHT EK +KC ECG F++
Sbjct: 266 YKCEECGEAFNRSSNLTTHKIIHTGEKPYKCEECGKAFIWSSTLTEHKKIHTRKKPYKCEECGKAFIWSSTLTRHKRMHTGEKPYKCEECGKAFSQSSTLTTHKIIHTGEKRYKCLECGKAFKQ 389 HSP 6 Score: 130.568 bits (327), Expect = 3.921e-34 Identity = 65/136 (47.79%), Postives = 89/136 (65.44%), Query Frame = -1
Query: 10 TRKNNLITKERGQSFKCKECGKAFEFNCDLKRHFRIHTCERPFMCQDCGKCFAQSDGLTQHLIVHSSIKPFKCEECGKNFKTNGSLKKHIKLHTEKKSFKCEECGKCFKTNCSLKQHKTIHTKEKTFKCEECGNCF 417
TR + T E+ +KC+ECGK+F + L H IHT E+P+ C++CGK F S LT+H I+H+ KP+KCE+CGK FK + L H ++HT +K +KCEECGK F + + +HK IHT K +KCEECG F
Sbjct: 478 TRHKRMHTGEK--PYKCEECGKSFSQSSTLTTHKIIHTGEKPYKCEECGKAFNWSSTLTKHKIIHTEEKPYKCEKCGKAFKQSSILTNHKRIHTGEKPYKCEECGKSFNRSSTFTKHKVIHTGVKPYKCEECGKAF 611 HSP 7 Score: 129.413 bits (324), Expect = 1.025e-33 Identity = 62/124 (50.00%), Postives = 83/124 (66.94%), Query Frame = -1
Query: 4 FKCKECGKAFEFNCDLKRHFRIHTCERPFMCQDCGKCFAQSDGLTQHLIVHSSIKPFKCEECGKNFKTNGSLKKHIKLHTEKKSFKCEECGKCFKTNCSLKQHKTIHTKEKTFKCEECGNCFQR 375
+KC+ECGKAF ++ L H +IHT ++P+ C++CGK F S LT+H +H+ KP+KCEECGK F + +L H +HT +K +KC ECGK FK +L HK IH EK +KCEECG F R
Sbjct: 294 YKCEECGKAFIWSSTLTEHKKIHTRKKPYKCEECGKAFIWSSTLTRHKRMHTGEKPYKCEECGKAFSQSSTLTTHKIIHTGEKRYKCLECGKAFKQLSTLTTHKIIHVGEKLYKCEECGKGFNR 417 HSP 8 Score: 127.872 bits (320), Expect = 3.665e-33 Identity = 62/124 (50.00%), Postives = 84/124 (67.74%), Query Frame = -1
Query: 4 FKCKECGKAFEFNCDLKRHFRIHTCERPFMCQDCGKCFAQSDGLTQHLIVHSSIKPFKCEECGKNFKTNGSLKKHIKLHTEKKSFKCEECGKCFKTNCSLKQHKTIHTKEKTFKCEECGNCFQR 375
+KC ECGKAF+ L H IH E+ + C++CGK F +S LT H I+H+ KP+KCEECGK F + +L KH ++HT +K +KCEECGK F + +L +HK +HT EK +KCEECG F +
Sbjct: 378 YKCLECGKAFKQLSTLTTHKIIHVGEKLYKCEECGKGFNRSSNLTTHKIIHTGEKPYKCEECGKAFIWSSTLTKHKRIHTREKPYKCEECGKAFIWSSTLTRHKRMHTGEKPYKCEECGKSFSQ 501 HSP 9 Score: 125.946 bits (315), Expect = 2.309e-32 Identity = 65/156 (41.67%), Postives = 91/156 (58.33%), Query Frame = -1
Query: 4 RGQSFKCKECGKAFEFNCDLKRHFRIHTCERP----------------------------FMCQDCGKCFAQSDGLTQHLIVHSSIKPFKCEECGKNFKTNGSLKKHIKLHTEKKSFKCEECGKCFKTNCSLKQHKTIHTKEKTFKCEECGNCFQR 387
R +S+KCKECGK F ++ L H +I+T E+P + C++CG+ F +S LT H I+H+ KP+KCEECGK F + +L +H K+HT KK +KCEECGK F + +L +HK +HT EK +KCEECG F +
Sbjct: 206 REKSYKCKECGKTFNWSSTLTNHRKIYTEEKPYKCEEYNKSPKQLSTLTTHEIIHAGEKLYKCEECGEAFNRSSNLTTHKIIHTGEKPYKCEECGKAFIWSSTLTEHKKIHTRKKPYKCEECGKAFIWSSTLTRHKRMHTGEKPYKCEECGKAFSQ 361 HSP 10 Score: 125.561 bits (314), Expect = 2.401e-32 Identity = 61/124 (49.19%), Postives = 83/124 (66.94%), Query Frame = -1
Query: 4 FKCKECGKAFEFNCDLKRHFRIHTCERPFMCQDCGKCFAQSDGLTQHLIVHSSIKPFKCEECGKNFKTNGSLKKHIKLHTEKKSFKCEECGKCFKTNCSLKQHKTIHTKEKTFKCEECGNCFQR 375
+KC+ECGKAF ++ L +H IHT E+P+ C+ CGK F QS LT H +H+ KP+KCEECGK+F + + KH +HT K +KCEECGK F + +L +HK IHT E+ +K E+ G F R
Sbjct: 518 YKCEECGKAFNWSSTLTKHKIIHTEEKPYKCEKCGKAFKQSSILTNHKRIHTGEKPYKCEECGKSFNRSSTFTKHKVIHTGVKPYKCEECGKAFFWSSTLTKHKRIHTGEQPYKWEKFGKAFNR 641 HSP 11 Score: 125.561 bits (314), Expect = 2.649e-32 Identity = 66/136 (48.53%), Postives = 86/136 (63.24%), Query Frame = -1
Query: 10 TRKNNLITKERGQSFKCKECGKAFEFNCDLKRHFRIHTCERPFMCQDCGKCFAQSDGLTQHLIVHSSIKPFKCEECGKNFKTNGSLKKHIKLHTEKKSFKCEECGKCFKTNCSLKQHKTIHTKEKTFKCEECGNCF 417
TR + T E+ +KC+ECGKAF + L H IHT E+ + C +CGK F Q LT H I+H K +KCEECGK F + +L H +HT +K +KCEECGK F + +L +HK IHT+EK +KCEECG F
Sbjct: 338 TRHKRMHTGEK--PYKCEECGKAFSQSSTLTTHKIIHTGEKRYKCLECGKAFKQLSTLTTHKIIHVGEKLYKCEECGKGFNRSSNLTTHKIIHTGEKPYKCEECGKAFIWSSTLTKHKRIHTREKPYKCEECGKAF 471 HSP 12 Score: 103.99 bits (258), Expect = 7.168e-25 Identity = 48/110 (43.64%), Postives = 74/110 (67.27%), Query Frame = -1
Query: 46 FKCKECGKAFEFNCDLKRHFRIHTCERPFMCQDCGKCFAQSDGLTQHLIVHSSIKPFKCEECGKNFKTNGSLKKHIKLHTEKKSFKCEECGKCFKTNCSLKQHKTIHTKE 375
+KC++CGKAF+ + L H RIHT E+P+ C++CGK F +S T+H ++H+ +KP+KCEECGK F + +L KH ++HT ++ +K E+ GK F + L K H +E
Sbjct: 546 YKCEKCGKAFKQSSILTNHKRIHTGEKPYKCEECGKSFNRSSTFTKHKVIHTGVKPYKCEECGKAFFWSSTLTKHKRIHTGEQPYKWEKFGKAFNRSSHLTTDKITHWRE 655 HSP 13 Score: 94.7449 bits (234), Expect = 1.233e-21 Identity = 53/124 (42.74%), Postives = 74/124 (59.68%), Query Frame = -1
Query: 10 QSFKCKECGKAFEFNCDLKRHFRIHTCERPFMCQDCGKCFAQSDGLTQHLIVHSSIKPFKCEECGKNFKTNGSLKKHIKLHTEKKSFKCEECGKCFKTNCSLKQHKTIHTKEKTFKCEECGNCF 381
+SFKCK+ K F +H I+ E+ + C++CGK F S LT H +++ KP+KCEE K+ K +L H +H +K +KCEECG+ F + +L HK IHT EK +KCEECG F
Sbjct: 180 KSFKCKKRVKLFCMLSHKTQHKSIYHREKSYKCKECGKTFNWSSTLTNHRKIYTEEKPYKCEEYNKSPKQLSTLTTHEIIHAGEKLYKCEECGEAFNRSSNLTTHKIIHTGEKPYKCEECGKAF 303 HSP 14 Score: 79.337 bits (194), Expect = 1.188e-16 Identity = 50/135 (37.04%), Postives = 71/135 (52.59%), Query Frame = -1
Query: 4 NNLITKERGQSFKCKECGKAFEFNCDLKRHFRIHTCERPFMCQDCGKCFAQSDGLTQHLIVHSSIKPFKCEECGKNFKTNGSLKKHIKLHTEKKSFKCEECGKCFKTNCSLKQHKTIHTKEKTFKCEECGNCFQR 408
N T + + F+C + K F + R HT ++ F C+ K F TQH ++ K +KC+ECGK F + +L H K++TE+K +KCEE K K +L H+ IH EK +KCEECG F R
Sbjct: 143 NQCFTTAQSKVFQCDKYLKVFYKFLNSNRPKIRHTEKKSFKCKKRVKLFCMLSHKTQHKSIYHREKSYKCKECGKTFNWSSTLTNHRKIYTEEKPYKCEEYNKSPKQLSTLTTHEIIHAGEKLYKCEECGEAFNR 277 The following BLAST results are available for this feature:
BLAST of TCONS_00045327 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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