TCONS_00045327 (transcript) - C. hemisphaerica

Overview
NameTCONS_00045327
Unique NameTCONS_00045327
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length762

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00045327 ID=TCONS_00045327|Name=TCONS_00045327|organism=Clytia hemisphaerica|type=transcript|length=762bp
TTTCCTTTGAAAACAattaccacattcttcacatttgaatgttttttctt
tgGTGTGTATTGTTTTATGTTGCTTTAACGAACAATTTGTTTTAAAACAT
TTGCCACATTCCTCACATTTGAATGACTTTTTTTCGGTGTGTAACTTAAT
ATGCTTTTTTAAAGAAccatttgttttaaagtttttaccGCATTCCTCAC
ATTTAAATGGTTTAATGCTGCTATGCACTATAAGATGCTGTGTTAGACCA
TCTGATTGGgcaaaacatttaccacaaTCTTGACACATGAAAGGTCTTTC
GCAAGTGTGAATTCTAAAATGTCTCTTCAAATCACAGTTGAACTCGAAGG
CTTTACCACATTCTTTGCATTTAAAACTTTGGCCACGTTCTTTTGTGATA
AGATTATTTTTCCTTGTCTTGGGAAGAGGATTTTCTACTTGTAAATTGTT
GGCATCTGTTGTTAAGTTTGTTGGTAGAATTATTTCATCGAGTTTaattt
taatatcaaaagaatCTGGTTGATGCTGAGAATCGGATACCTCTTCGAAA
GGGACCAAAGAATTATTTTCCTCTTCAATCTTTATCTTCAATGGTATATC
ATCATCTATGTTTGCATCAACAAATTCATGCTTTTCCTCTCCTAAGAAAT
CTAAAAAAGCATCCTCCGGACCAATCTTGATGGAAACAGAATTCACTTTT
TGTTCGtctttgatttctttattcattgcatatagttttttttttgttat
ctttattttttc
Run BLAST on NCBI

protein sequence of TCONS_00045327-protein

>TCONS_00045327-protein ID=TCONS_00045327-protein|Name=TCONS_00045327-protein|organism=Clytia hemisphaerica|type=polypeptide|length=254bp
EKIKITKKKLYAMNKEIKDEQKVNSVSIKIGPEDAFLDFLGEEKHEFVDA
NIDDDIPLKIKIEEENNSLVPFEEVSDSQHQPDSFDIKIKLDEIILPTNL
TTDANNLQVENPLPKTRKNNLITKERGQSFKCKECGKAFEFNCDLKRHFR
IHTCERPFMCQDCGKCFAQSDGLTQHLIVHSSIKPFKCEECGKNFKTNGS
LKKHIKLHTEKKSFKCEECGKCFKTNCSLKQHKTIHTKEKTFKCEECGNC
FQRK
Run BLAST on NCBI

transcript from alignment at sc0007513:111..872

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00045327 ID=TCONS_00045327|Name=TCONS_00045327|organism=Clytia hemisphaerica|type=transcript|length=762bp|location=Sequence derived from alignment at sc0007513:111..872 (Clytia hemisphaerica)
gaaaaaataaagataacaaaaaaaaaactatatgcaatgaataaagaaat caaagaCGAACAAAAAGTGAATTCTGTTTCCATCAAGATTGGTCCGGAGG ATGCTTTTTTAGATTTCTTAGGAGAGGAAAAGCATGAATTTGTTGATGCA AACATAGATGATGATATACCATTGAAGATAAAGATTGAAGAGGAAAATAA TTCTTTGGTCCCTTTCGAAGAGGTATCCGATTCTCAGCATCAACCAGatt cttttgatattaaaattAAACTCGATGAAATAATTCTACCAACAAACTTA ACAACAGATGCCAACAATTTACAAGTAGAAAATCCTCTTCCCAAGACAAG GAAAAATAATCTTATCACAAAAGAACGTGGCCAAAGTTTTAAATGCAAAG AATGTGGTAAAGCCTTCGAGTTCAACTGTGATTTGAAGAGACATTTTAGA ATTCACACTTGCGAAAGACCTTTCATGTGTCAAGAttgtggtaaatgttt tgcCCAATCAGATGGTCTAACACAGCATCTTATAGTGCATAGCAGCATTA AACCATTTAAATGTGAGGAATGCggtaaaaactttaaaacaaatggTTCT TTAAAAAAGCATATTAAGTTACACACCGAAAAAAAGTCATTCAAATGTGA GGAATGTGGCAAATGTTTTAAAACAAATTGTTCGTTAAAGCAACATAAAA CAATACACACcaaagaaaaaacattcaaatgtgaagaatgtggtaatTGT TTTCAAAGGAAA

Coding sequence (CDS) from alignment at sc0007513:111..872

>TCONS_00045327 ID=TCONS_00045327|Name=TCONS_00045327|organism=Clytia hemisphaerica|type=CDS|length=762bp|location=Sequence derived from alignment at sc0007513:111..872 (Clytia hemisphaerica)
gaaaaaataaagataacaaaaaaaaaactatatgcaatgaataaagaaat
caaagaCGAACAAAAAGTGAATTCTGTTTCCATCAAGATTGGTCCGGAGG
ATGCTTTTTTAGATTTCTTAGGAGAGGAAAAGCATGAATTTGTTGATGCA
AACATAGATGATGATATACCATTGAAGATAAAGATTGAAGAGGAAAATAA
TTCTTTGGTCCCTTTCGAAGAGGTATCCGATTCTCAGCATCAACCAGatt
cttttgatattaaaattAAACTCGATGAAATAATTCTACCAACAAACTTA
ACAACAGATGCCAACAATTTACAAGTAGAAAATCCTCTTCCCAAGACAAG
GAAAAATAATCTTATCACAAAAGAACGTGGCCAAAGTTTTAAATGCAAAG
AATGTGGTAAAGCCTTCGAGTTCAACTGTGATTTGAAGAGACATTTTAGA
ATTCACACTTGCGAAAGACCTTTCATGTGTCAAGAttgtggtaaatgttt
tgcCCAATCAGATGGTCTAACACAGCATCTTATAGTGCATAGCAGCATTA
AACCATTTAAATGTGAGGAATGCggtaaaaactttaaaacaaatggTTCT
TTAAAAAAGCATATTAAGTTACACACCGAAAAAAAGTCATTCAAATGTGA
GGAATGTGGCAAATGTTTTAAAACAAATTGTTCGTTAAAGCAACATAAAA
CAATACACACcaaagaaaaaacattcaaatgtgaagaatgtggtaatTGT
TTTCAAAGGAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_028908XLOC_028908Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00045327-exon-sc0007513-1491911889:111..872TCONS_00045327-exon-sc0007513-1491911889:111..872Clytia hemisphaericaexon
TCONS_00045327-exon-sc0007513-1510915933:111..872TCONS_00045327-exon-sc0007513-1510915933:111..872Clytia hemisphaericaexon
TCONS_00045327-exon-sc0007513-1575043694:111..872TCONS_00045327-exon-sc0007513-1575043694:111..872Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00045327-proteinTCONS_00045327-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0007513supercontigsc0007513:111..872 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
4.10978 4.26992 3.95916 2.28079 0 0 0.492776 0 0.0540622 0.084726 0.194993 0 0 0.132932 0.160599 0.163607 0.358303 0.216293 0 0 0.438277 0.443964 2.27625 4.05823 1.13167 2.3115 0.316613 0.409947 0.999161 1.46566
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR013087Znf_C2H2_type
IPR013083Znf_RING/FYVE/PHD
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
Blast
BLAST of TCONS_00045327 vs. Swiss-Prot (Human)
Match: ZN254 (Zinc finger protein 254 OS=Homo sapiens GN=ZNF254 PE=2 SV=3)

HSP 1 Score: 148.673 bits (374), Expect = 1.248e-40
Identity = 70/128 (54.69%), Postives = 92/128 (71.88%), Query Frame = -1
Query:    4 RGQSFKCKECGKAFEFNCDLKRHFRIHTCERPFMCQDCGKCFAQSDGLTQHLIVHSSIKPFKCEECGKNFKTNGSLKKHIKLHTEKKSFKCEECGKCFKTNCSLKQHKTIHTKEKTFKCEECGNCFQR 387
            R + +KC+ECGKAF ++  L RH R+HT E+P+ C++CGK F+QS  LT H I+H+  KP+KCEECGK F  + +L KH  +HTE+K +KCE+CGK FK +  L  HK IHT EK +KCEECG  F R
Sbjct:  458 REKPYKCEECGKAFIWSSTLTRHKRMHTGEKPYKCEECGKSFSQSSTLTTHKIIHTGEKPYKCEECGKAFNWSSTLTKHKIIHTEEKPYKCEKCGKAFKQSSILTNHKRIHTGEKPYKCEECGKSFNR 585          

HSP 2 Score: 137.502 bits (345), Expect = 1.586e-36
Identity = 63/124 (50.81%), Postives = 90/124 (72.58%), Query Frame = -1
Query:    4 FKCKECGKAFEFNCDLKRHFRIHTCERPFMCQDCGKCFAQSDGLTQHLIVHSSIKPFKCEECGKNFKTNGSLKKHIKLHTEKKSFKCEECGKCFKTNCSLKQHKTIHTKEKTFKCEECGNCFQR 375
            +KC+ECGKAF ++  L +H RIHT E+P+ C++CGK F  S  LT+H  +H+  KP+KCEECGK+F  + +L  H  +HT +K +KCEECGK F  + +L +HK IHT+EK +KCE+CG  F++
Sbjct:  434 YKCEECGKAFIWSSTLTKHKRIHTREKPYKCEECGKAFIWSSTLTRHKRMHTGEKPYKCEECGKSFSQSSTLTTHKIIHTGEKPYKCEECGKAFNWSSTLTKHKIIHTEEKPYKCEKCGKAFKQ 557          

HSP 3 Score: 134.806 bits (338), Expect = 1.372e-35
Identity = 65/126 (51.59%), Postives = 86/126 (68.25%), Query Frame = -1
Query:   10 RGQSFKCKECGKAFEFNCDLKRHFRIHTCERPFMCQDCGKCFAQSDGLTQHLIVHSSIKPFKCEECGKNFKTNGSLKKHIKLHTEKKSFKCEECGKCFKTNCSLKQHKTIHTKEKTFKCEECGNCF 387
            R + +KC+ECGKAF ++  L RH R+HT E+P+ C++CGK F+QS  LT H I+H+  K +KC ECGK FK   +L  H  +H  +K +KCEECGK F  + +L  HK IHT EK +KCEECG  F
Sbjct:  318 RKKPYKCEECGKAFIWSSTLTRHKRMHTGEKPYKCEECGKAFSQSSTLTTHKIIHTGEKRYKCLECGKAFKQLSTLTTHKIIHVGEKLYKCEECGKGFNRSSNLTTHKIIHTGEKPYKCEECGKAF 443          

HSP 4 Score: 133.265 bits (334), Expect = 4.449e-35
Identity = 62/122 (50.82%), Postives = 84/122 (68.85%), Query Frame = -1
Query:   10 FKCKECGKAFEFNCDLKRHFRIHTCERPFMCQDCGKCFAQSDGLTQHLIVHSSIKPFKCEECGKNFKTNGSLKKHIKLHTEKKSFKCEECGKCFKTNCSLKQHKTIHTKEKTFKCEECGNCF 375
            +KC+ECGK F  + +L  H  IHT E+P+ C++CGK F  S  LT+H  +H+  KP+KCEECGK F  + +L +H ++HT +K +KCEECGK F  + +L  HK IHT EK +KCEECG  F
Sbjct:  406 YKCEECGKGFNRSSNLTTHKIIHTGEKPYKCEECGKAFIWSSTLTKHKRIHTREKPYKCEECGKAFIWSSTLTRHKRMHTGEKPYKCEECGKSFSQSSTLTTHKIIHTGEKPYKCEECGKAF 527          

HSP 5 Score: 131.724 bits (330), Expect = 1.881e-34
Identity = 61/124 (49.19%), Postives = 86/124 (69.35%), Query Frame = -1
Query:    4 FKCKECGKAFEFNCDLKRHFRIHTCERPFMCQDCGKCFAQSDGLTQHLIVHSSIKPFKCEECGKNFKTNGSLKKHIKLHTEKKSFKCEECGKCFKTNCSLKQHKTIHTKEKTFKCEECGNCFQR 375
            +KC+ECG+AF  + +L  H  IHT E+P+ C++CGK F  S  LT+H  +H+  KP+KCEECGK F  + +L +H ++HT +K +KCEECGK F  + +L  HK IHT EK +KC ECG  F++
Sbjct:  266 YKCEECGEAFNRSSNLTTHKIIHTGEKPYKCEECGKAFIWSSTLTEHKKIHTRKKPYKCEECGKAFIWSSTLTRHKRMHTGEKPYKCEECGKAFSQSSTLTTHKIIHTGEKRYKCLECGKAFKQ 389          

HSP 6 Score: 130.568 bits (327), Expect = 3.921e-34
Identity = 65/136 (47.79%), Postives = 89/136 (65.44%), Query Frame = -1
Query:   10 TRKNNLITKERGQSFKCKECGKAFEFNCDLKRHFRIHTCERPFMCQDCGKCFAQSDGLTQHLIVHSSIKPFKCEECGKNFKTNGSLKKHIKLHTEKKSFKCEECGKCFKTNCSLKQHKTIHTKEKTFKCEECGNCF 417
            TR   + T E+   +KC+ECGK+F  +  L  H  IHT E+P+ C++CGK F  S  LT+H I+H+  KP+KCE+CGK FK +  L  H ++HT +K +KCEECGK F  + +  +HK IHT  K +KCEECG  F
Sbjct:  478 TRHKRMHTGEK--PYKCEECGKSFSQSSTLTTHKIIHTGEKPYKCEECGKAFNWSSTLTKHKIIHTEEKPYKCEKCGKAFKQSSILTNHKRIHTGEKPYKCEECGKSFNRSSTFTKHKVIHTGVKPYKCEECGKAF 611          

HSP 7 Score: 129.413 bits (324), Expect = 1.025e-33
Identity = 62/124 (50.00%), Postives = 83/124 (66.94%), Query Frame = -1
Query:    4 FKCKECGKAFEFNCDLKRHFRIHTCERPFMCQDCGKCFAQSDGLTQHLIVHSSIKPFKCEECGKNFKTNGSLKKHIKLHTEKKSFKCEECGKCFKTNCSLKQHKTIHTKEKTFKCEECGNCFQR 375
            +KC+ECGKAF ++  L  H +IHT ++P+ C++CGK F  S  LT+H  +H+  KP+KCEECGK F  + +L  H  +HT +K +KC ECGK FK   +L  HK IH  EK +KCEECG  F R
Sbjct:  294 YKCEECGKAFIWSSTLTEHKKIHTRKKPYKCEECGKAFIWSSTLTRHKRMHTGEKPYKCEECGKAFSQSSTLTTHKIIHTGEKRYKCLECGKAFKQLSTLTTHKIIHVGEKLYKCEECGKGFNR 417          

HSP 8 Score: 127.872 bits (320), Expect = 3.665e-33
Identity = 62/124 (50.00%), Postives = 84/124 (67.74%), Query Frame = -1
Query:    4 FKCKECGKAFEFNCDLKRHFRIHTCERPFMCQDCGKCFAQSDGLTQHLIVHSSIKPFKCEECGKNFKTNGSLKKHIKLHTEKKSFKCEECGKCFKTNCSLKQHKTIHTKEKTFKCEECGNCFQR 375
            +KC ECGKAF+    L  H  IH  E+ + C++CGK F +S  LT H I+H+  KP+KCEECGK F  + +L KH ++HT +K +KCEECGK F  + +L +HK +HT EK +KCEECG  F +
Sbjct:  378 YKCLECGKAFKQLSTLTTHKIIHVGEKLYKCEECGKGFNRSSNLTTHKIIHTGEKPYKCEECGKAFIWSSTLTKHKRIHTREKPYKCEECGKAFIWSSTLTRHKRMHTGEKPYKCEECGKSFSQ 501          

HSP 9 Score: 125.946 bits (315), Expect = 2.309e-32
Identity = 65/156 (41.67%), Postives = 91/156 (58.33%), Query Frame = -1
Query:    4 RGQSFKCKECGKAFEFNCDLKRHFRIHTCERP----------------------------FMCQDCGKCFAQSDGLTQHLIVHSSIKPFKCEECGKNFKTNGSLKKHIKLHTEKKSFKCEECGKCFKTNCSLKQHKTIHTKEKTFKCEECGNCFQR 387
            R +S+KCKECGK F ++  L  H +I+T E+P                            + C++CG+ F +S  LT H I+H+  KP+KCEECGK F  + +L +H K+HT KK +KCEECGK F  + +L +HK +HT EK +KCEECG  F +
Sbjct:  206 REKSYKCKECGKTFNWSSTLTNHRKIYTEEKPYKCEEYNKSPKQLSTLTTHEIIHAGEKLYKCEECGEAFNRSSNLTTHKIIHTGEKPYKCEECGKAFIWSSTLTEHKKIHTRKKPYKCEECGKAFIWSSTLTRHKRMHTGEKPYKCEECGKAFSQ 361          

HSP 10 Score: 125.561 bits (314), Expect = 2.401e-32
Identity = 61/124 (49.19%), Postives = 83/124 (66.94%), Query Frame = -1
Query:    4 FKCKECGKAFEFNCDLKRHFRIHTCERPFMCQDCGKCFAQSDGLTQHLIVHSSIKPFKCEECGKNFKTNGSLKKHIKLHTEKKSFKCEECGKCFKTNCSLKQHKTIHTKEKTFKCEECGNCFQR 375
            +KC+ECGKAF ++  L +H  IHT E+P+ C+ CGK F QS  LT H  +H+  KP+KCEECGK+F  + +  KH  +HT  K +KCEECGK F  + +L +HK IHT E+ +K E+ G  F R
Sbjct:  518 YKCEECGKAFNWSSTLTKHKIIHTEEKPYKCEKCGKAFKQSSILTNHKRIHTGEKPYKCEECGKSFNRSSTFTKHKVIHTGVKPYKCEECGKAFFWSSTLTKHKRIHTGEQPYKWEKFGKAFNR 641          

HSP 11 Score: 125.561 bits (314), Expect = 2.649e-32
Identity = 66/136 (48.53%), Postives = 86/136 (63.24%), Query Frame = -1
Query:   10 TRKNNLITKERGQSFKCKECGKAFEFNCDLKRHFRIHTCERPFMCQDCGKCFAQSDGLTQHLIVHSSIKPFKCEECGKNFKTNGSLKKHIKLHTEKKSFKCEECGKCFKTNCSLKQHKTIHTKEKTFKCEECGNCF 417
            TR   + T E+   +KC+ECGKAF  +  L  H  IHT E+ + C +CGK F Q   LT H I+H   K +KCEECGK F  + +L  H  +HT +K +KCEECGK F  + +L +HK IHT+EK +KCEECG  F
Sbjct:  338 TRHKRMHTGEK--PYKCEECGKAFSQSSTLTTHKIIHTGEKRYKCLECGKAFKQLSTLTTHKIIHVGEKLYKCEECGKGFNRSSNLTTHKIIHTGEKPYKCEECGKAFIWSSTLTKHKRIHTREKPYKCEECGKAF 471          

HSP 12 Score: 103.99 bits (258), Expect = 7.168e-25
Identity = 48/110 (43.64%), Postives = 74/110 (67.27%), Query Frame = -1
Query:   46 FKCKECGKAFEFNCDLKRHFRIHTCERPFMCQDCGKCFAQSDGLTQHLIVHSSIKPFKCEECGKNFKTNGSLKKHIKLHTEKKSFKCEECGKCFKTNCSLKQHKTIHTKE 375
            +KC++CGKAF+ +  L  H RIHT E+P+ C++CGK F +S   T+H ++H+ +KP+KCEECGK F  + +L KH ++HT ++ +K E+ GK F  +  L   K  H +E
Sbjct:  546 YKCEKCGKAFKQSSILTNHKRIHTGEKPYKCEECGKSFNRSSTFTKHKVIHTGVKPYKCEECGKAFFWSSTLTKHKRIHTGEQPYKWEKFGKAFNRSSHLTTDKITHWRE 655          

HSP 13 Score: 94.7449 bits (234), Expect = 1.233e-21
Identity = 53/124 (42.74%), Postives = 74/124 (59.68%), Query Frame = -1
Query:   10 QSFKCKECGKAFEFNCDLKRHFRIHTCERPFMCQDCGKCFAQSDGLTQHLIVHSSIKPFKCEECGKNFKTNGSLKKHIKLHTEKKSFKCEECGKCFKTNCSLKQHKTIHTKEKTFKCEECGNCF 381
            +SFKCK+  K F       +H  I+  E+ + C++CGK F  S  LT H  +++  KP+KCEE  K+ K   +L  H  +H  +K +KCEECG+ F  + +L  HK IHT EK +KCEECG  F
Sbjct:  180 KSFKCKKRVKLFCMLSHKTQHKSIYHREKSYKCKECGKTFNWSSTLTNHRKIYTEEKPYKCEEYNKSPKQLSTLTTHEIIHAGEKLYKCEECGEAFNRSSNLTTHKIIHTGEKPYKCEECGKAF 303          

HSP 14 Score: 79.337 bits (194), Expect = 1.188e-16
Identity = 50/135 (37.04%), Postives = 71/135 (52.59%), Query Frame = -1
Query:    4 NNLITKERGQSFKCKECGKAFEFNCDLKRHFRIHTCERPFMCQDCGKCFAQSDGLTQHLIVHSSIKPFKCEECGKNFKTNGSLKKHIKLHTEKKSFKCEECGKCFKTNCSLKQHKTIHTKEKTFKCEECGNCFQR 408
            N   T  + + F+C +  K F    +  R    HT ++ F C+   K F      TQH  ++   K +KC+ECGK F  + +L  H K++TE+K +KCEE  K  K   +L  H+ IH  EK +KCEECG  F R
Sbjct:  143 NQCFTTAQSKVFQCDKYLKVFYKFLNSNRPKIRHTEKKSFKCKKRVKLFCMLSHKTQHKSIYHREKSYKCKECGKTFNWSSTLTNHRKIYTEEKPYKCEEYNKSPKQLSTLTTHEIIHAGEKLYKCEECGEAFNR 277          
The following BLAST results are available for this feature:
BLAST of TCONS_00045327 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
ZN2541.248e-4054.69Zinc finger protein 254 OS=Homo sapiens GN=ZNF254 ... [more]
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