|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00045324 ID=TCONS_00045324|Name=TCONS_00045324|organism=Clytia hemisphaerica|type=transcript|length=873bp
TTGCACGACCTTCTATTCAGTACCATACCAGACATCATTACGTCAGTTGT
TCGATATTTCATTGTTTGTTACTATCTCATATCCATGGATTTCTATCTCG
GTGTAAGCAGCATCTTATTCACGACCTTTGCTAATATTTACATCGCTCGA
TTCTTTATGAAAAGAGATATTATATCGTATAAACAGCAAGCACAGCTCAC
TCGGCGACAAGATCAAATCCAAGGAGATATCTTCGGTATGTTATCTACAG
TGAAGACATTTGCCAAGGAAAAATACCATGAAAAAGAATACAACAAGTGG
TTTGATTCAAGCTTGAAAAATATGAAACGTAATATGGCGTCAGAATATTT
CAGATCTTTTTTGTCACAGATTATTTACATTTGTGAATACATTTGTATTG
TATACTTTGGTTATATCAGGTACTGCGGTGGCAATggaatgacgtcatcg
gaattCATTGGTTTTACGATTCTTTATGATCAACTTGACAGTTTATTTGC
GGACATCAAAGGTAGTTTGACGTTTATCGGACGGAGCTTTCATGACGTCA
AACGGTGCAATGCATTGTGGGCTACTAAATCGAGgatgaaaaatggaaag
aaaaaaatggaaaacgTAAAAGGTAAATAATTCtctattttgtttctttt
ttttgggcAGAAAACATTCggttacttttctcttttttgaggGAGATTCG
AATGCATGAGAATTAAAAAGTTGATTATGTCAGCTTCAGGCTATTTTCAG
CACTACATGCTTACGTTTTATGTGGGAACTGATTCTCAAGAATTTAagtc
ataaaatattttgaataccaaatatttcaagtgtttttaaAGCGACTATT
TTTCCTTTTGAACTCTATCTCTT Run BLAST on NCBI protein sequence of TCONS_00045324-protein >TCONS_00045324-protein ID=TCONS_00045324-protein|Name=TCONS_00045324-protein|organism=Clytia hemisphaerica|type=polypeptide|length=209bp
LHDLLFSTIPDIITSVVRYFIVCYYLISMDFYLGVSSILFTTFANIYIAR
FFMKRDIISYKQQAQLTRRQDQIQGDIFGMLSTVKTFAKEKYHEKEYNKW
FDSSLKNMKRNMASEYFRSFLSQIIYICEYICIVYFGYIRYCGGNGMTSS
EFIGFTILYDQLDSLFADIKGSLTFIGRSFHDVKRCNALWATKSRMKNGK
KKMENVKGK Run BLAST on NCBI transcript from alignment at sc0007509:9..881 Legend: exonthree_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00045324 ID=TCONS_00045324|Name=TCONS_00045324|organism=Clytia hemisphaerica|type=transcript|length=873bp|location=Sequence derived from alignment at sc0007509:9..881 (Clytia hemisphaerica)
AAGAGATAGAGTTCAAAAGGAAAAATAGTCGCTttaaaaacacttgaaat
atttggtattcaaaatattttatgactTAAATTCTTGAGAATCAGTTCCC
ACATAAAACGTAAGCATGTAGTGCTGAAAATAGCCTGAAGCTGACATAAT
CAACTTTTTAATTCTCATGCATTCGAATCTCcctcaaaaaagagaaaagt
aaccGAATGTTTTCTgcccaaaaaaaagaaacaaaatagaGAATTATTTA
CCTTTTAcgttttccatttttttctttccatttttcatcCTCGATTTAGT
AGCCCACAATGCATTGCACCGTTTGACGTCATGAAAGCTCCGTCCGATAA
ACGTCAAACTACCTTTGATGTCCGCAAATAAACTGTCAAGTTGATCATAA
AGAATCGTAAAACCAATGaattccgatgacgtcattccATTGCCACCGCA
GTACCTGATATAACCAAAGTATACAATACAAATGTATTCACAAATGTAAA
TAATCTGTGACAAAAAAGATCTGAAATATTCTGACGCCATATTACGTTTC
ATATTTTTCAAGCTTGAATCAAACCACTTGTTGTATTCTTTTTCATGGTA
TTTTTCCTTGGCAAATGTCTTCACTGTAGATAACATACCGAAGATATCTC
CTTGGATTTGATCTTGTCGCCGAGTGAGCTGTGCTTGCTGTTTATACGAT
ATAATATCTCTTTTCATAAAGAATCGAGCGATGTAAATATTAGCAAAGGT
CGTGAATAAGATGCTGCTTACACCGAGATAGAAATCCATGGATATGAGAT
AGTAACAAACAATGAAATATCGAACAACTGACGTAATGATGTCTGGTATG
GTACTGAATAGAAGGTCGTGCAA Coding sequence (CDS) from alignment at sc0007509:9..881 >TCONS_00045324 ID=TCONS_00045324|Name=TCONS_00045324|organism=Clytia hemisphaerica|type=CDS|length=630bp|location=Sequence derived from alignment at sc0007509:9..881 (Clytia hemisphaerica)
TTATTTACCTTTTAcgttttccatttttttctttccatttttcatcCTCG
ATTTAGTAGCCCACAATGCATTGCACCGTTTGACGTCATGAAAGCTCCGT
CCGATAAACGTCAAACTACCTTTGATGTCCGCAAATAAACTGTCAAGTTG
ATCATAAAGAATCGTAAAACCAATGaattccgatgacgtcattccATTGC
CACCGCAGTACCTGATATAACCAAAGTATACAATACAAATGTATTCACAA
ATGTAAATAATCTGTGACAAAAAAGATCTGAAATATTCTGACGCCATATT
ACGTTTCATATTTTTCAAGCTTGAATCAAACCACTTGTTGTATTCTTTTT
CATGGTATTTTTCCTTGGCAAATGTCTTCACTGTAGATAACATACCGAAG
ATATCTCCTTGGATTTGATCTTGTCGCCGAGTGAGCTGTGCTTGCTGTTT
ATACGATATAATATCTCTTTTCATAAAGAATCGAGCGATGTAAATATTAG
CAAAGGTCGTGAATAAGATGCTGCTTACACCGAGATAGAAATCCATGGAT
ATGAGATAGTAACAAACAATGAAATATCGAACAACTGACGTAATGATGTC
TGGTATGGTACTGAATAGAAGGTCGTGCAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00045324-exon-sc0007509-1491911889:9..881 | TCONS_00045324-exon-sc0007509-1491911889:9..881 | Clytia hemisphaerica | exon |
| TCONS_00045324-exon-sc0007509-1510915933:9..881 | TCONS_00045324-exon-sc0007509-1510915933:9..881 | Clytia hemisphaerica | exon |
| TCONS_00045324-exon-sc0007509-1575043694:9..881 | TCONS_00045324-exon-sc0007509-1575043694:9..881 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0007509 | supercontig | sc0007509:9..881 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR011527 | ABC1_TM_dom |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0055085 | transmembrane transport |
| GO:0006810 | transport |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016021 | integral component of membrane |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0005524 | ATP binding |
| GO:0042626 | ATPase activity, coupled to transmembrane movement of substances |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0055085 |
transmembrane transport |
| biological_process |
GO:0006810 |
transport |
| cellular_component |
GO:0016021 |
integral component of membrane |
| molecular_function |
GO:0042626 |
ATPase activity, coupled to transmembrane movement of substances |
| molecular_function |
GO:0005524 |
ATP binding |
Blast
The following BLAST results are available for this feature:
|
