TCONS_00045309 (transcript) - C. hemisphaerica

Overview
NameTCONS_00045309
Unique NameTCONS_00045309
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length871

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00045309 ID=TCONS_00045309|Name=TCONS_00045309|organism=Clytia hemisphaerica|type=transcript|length=871bp
CAACTTTCGGCCAAAAGATAACAAgatgatatttttatcaatttaactat
tggattatttttctttcttcaggCTCGTTTCTTGCTGTCACGTGTCAATC
CTTCTCAAACACACAACAATCAATACATGATGGGTGGTAGCGGTGATGCA
TCTGCCATTTTGACTGATGACGTCAGTTTACAAGTATTTATGGACCATTT
GAAAAAATTGGCTGTGTCGTCTAATAATTAGGAATTTTCTGatcaaaata
atgatttttattttcaggttaaTTAATTAATGTAttagtttttaagaata
ttattttattaaaatttaagttttttattctggtcattaaaatatctCTT
CCATTAGATCTTTTCATCATCACCCTCGCTTCATACATTCCTTAGTTGTT
TTATACATGATATAATAATTCAATCGTTGGTCGTGATACAActactttaa
aaatattttcctctATCTTAAAACTGATATTATTTCAAGTCTTAAACCCA
TGCTTGTAAACGATTTCATTATATTTTCATCAGTAcattatatttataaa
attaggaattttatctgaaatattttcattatgCGAAACAAACGATTTCA
CACTGATTTCTCTAATCtctctaaagtctgtctcaaaagagTGTGGACAC
TTTAATTATTTTCCAACACTAGGCCCACCAACAATTCCCTGTAAAGTACT
TTCCTGTAGCAAAGAAATGTAGAAGAAACAGCTTATAATAGACAAAATAC
TATACCGGGTAGTCCAAAAAAAGTGTccataaaattcactttttgacgTA
GCTTGTTTTTGTGGgtctattgacttgaaatttggtacaggcAATCTTTA
GCATAACTCTGAGCACCCCTC
Run BLAST on NCBI

transcript from alignment at sc0007470:10..880

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00045309 ID=TCONS_00045309|Name=TCONS_00045309|organism=Clytia hemisphaerica|type=transcript|length=871bp|location=Sequence derived from alignment at sc0007470:10..880 (Clytia hemisphaerica)
GAGGGGTGCTCAGAGTTATGCTAAAGATTgcctgtaccaaatttcaagtc
aatagacCCACAAAAACAAGCTAcgtcaaaaagtgaattttatggACACT
TTTTTTGGACTACCCGGTATAGTATTTTGTCTATTATAAGCTGTTTCTTC
TACATTTCTTTGCTACAGGAAAGTACTTTACAGGGAATTGTTGGTGGGCC
TAGTGTTGGAAAATAATTAAAGTGTCCACActcttttgagacagacttta
gagaGATTAGAGAAATCAGTGTGAAATCGTTTGTTTCGcataatgaaaat
atttcagataaaattcctaattttataaatataatgTACTGATGAAAATA
TAATGAAATCGTTTACAAGCATGGGTTTAAGACTTGAAATAATATCAGTT
TTAAGATagaggaaaatatttttaaagtagTTGTATCACGACCAACGATT
GAATTATTATATCATGTATAAAACAACTAAGGAATGTATGAAGCGAGGGT
GATGATGAAAAGATCTAATGGAAGagatattttaatgaccagaataaaaa
acttaaattttaataaaataatattcttaaaaactaaTACATTAATTAAt
taacctgaaaataaaaatcattattttgatCAGAAAATTCCTAATTATTA
GACGACACAGCCAATTTTTTCAAATGGTCCATAAATACTTGTAAACTGAC
GTCATCAGTCAAAATGGCAGATGCATCACCGCTACCACCCATCATGTATT
GATTGTTGTGTGTTTGAGAAGGATTGACACGTGACAGCAAGAAACGAGcc
tgaagaaagaaaaataatccaatagttaaattgataaaaatatcatcTTG
TTATCTTTTGGCCGAAAGTTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_028890XLOC_028890Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00045309-exon-sc0007470-1491911889:10..880TCONS_00045309-exon-sc0007470-1491911889:10..880Clytia hemisphaericaexon
TCONS_00045309-exon-sc0007470-1510915933:10..880TCONS_00045309-exon-sc0007470-1510915933:10..880Clytia hemisphaericaexon
TCONS_00045309-exon-sc0007470-1575043694:10..880TCONS_00045309-exon-sc0007470-1575043694:10..880Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0007470supercontigsc0007470:10..880 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
23.7947	19.6499	17.4756	22.0839	15.1047	12.7355	40.6514	41.1535	20.4578	29.9832	36.8667	28.5178	29.3335	31.3145	25.5622	30.2733	17.5005	21.0302	19.0277	18.7785	16.3219	20.3201	20.6463	24.6921	23.7636	25.5734	17.1955	20.0768	33.3103	27.6352
Blast
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BLAST of TCONS_00045309 vs. Swiss-Prot (Human)
Match: SC23A (Protein transport protein Sec23A OS=Homo sapiens GN=SEC23A PE=1 SV=2)

HSP 1 Score: 80.4925 bits (197), Expect = 7.565e-17
Identity = 41/51 (80.39%), Postives = 42/51 (82.35%), Query Frame = 1 
Query:   70 QARFLLSRVNPSQTHNNQYMMGGSGDASAILTDDVSLQVFMDHLKKLAVSS 222
            QARFLLS+VNPSQTHNN Y  G    A  ILTDDVSLQVFMDHLKKLAVSS
Sbjct:  714 QARFLLSKVNPSQTHNNMYAWGQESGA-PILTDDVSLQVFMDHLKKLAVSS 763
The following BLAST results are available for this feature:
BLAST of TCONS_00045309 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
SC23A7.565e-1780.39Protein transport protein Sec23A OS=Homo sapiens G... [more]
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