TCONS_00045275 (transcript) - C. hemisphaerica

Overview
NameTCONS_00045275
Unique NameTCONS_00045275
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length409

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00045275 ID=TCONS_00045275|Name=TCONS_00045275|organism=Clytia hemisphaerica|type=transcript|length=409bp
atttctgGCCGATATAAAGGTATCATTTAACCGCCTGTTAATCGTTTCGC
CGCTTTTTTGCCGCACATTTTATCGATCTGTCCGCGCCAAATCccggtct
catttttaatgtactcaAAATCGCTTAGGGGGTCACATTTACGGTTTTTA
TTGTTAGGGATTAGTAATTTATTTTTATGACTCGTGGTATCCGTTTGTAT
AACtttgatattttattgttcaattTTAGGTCTTTGAAAGCCAACAAAAG
GTGGATACATTAACAAAAGACTTGAAGCATCTTAACGAGATCAATAAGGG
ATTGCAAACAAAACTGAAGAAATTGGAGCAAGCTTTTTCTTCGCCTAGTC
CACGGTCAAGTGCCATCAAAAGATTTATGATGGAAAGGTTTGAAACACCA
ATTCTTACT
Run BLAST on NCBI

transcript from alignment at sc0007376:410..967+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00045275 ID=TCONS_00045275|Name=TCONS_00045275|organism=Clytia hemisphaerica|type=transcript|length=558bp|location=Sequence derived from alignment at sc0007376:410..967+ (Clytia hemisphaerica)
atttctgGCCGATATAAAGGTATCATTTAACCGCCTGTTAATCGTTTCGC
CGCTTTTTTGCCGCACATTTTATCGATCTGTCCGCGCCAAATCccggtct
catttttaatgtactcaAAATCGCTTAGGGGGTCACATTTACGGTTTTTA
TTGTTAGGGATTAGTAATTTATTTTTATGACTCGTGGTATCCGTTTGTAT
AACtttgatattttattgttcaattTTAGGTCTTTGAAAGCCAACAAAAG
GTGGATACATTAACAAAAGACTTGAAGCATCTTAACGAGATCAATAAGGT
ATTACAAATACAAATTTCAATTAGCAACAGACTACGAGCTACAAATTTTG
TTTGCATCTAAGCCATatcttttgaaaagttttgtgcAATTTGTATCTCA
TTCCTAACTCATGTTTACATTCtcgttttcaaatgtttttcttgtAGGGA
TTGCAAACAAAACTGAAGAAATTGGAGCAAGCTTTTTCTTCGCCTAGTCC
ACGGTCAAGTGCCATCAAAAGATTTATGATGGAAAGGTTTGAAACACCAA
TTCTTACT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_028856XLOC_028856Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00045275-exon-sc0007376-1491911889:410..707TCONS_00045275-exon-sc0007376-1491911889:410..707Clytia hemisphaericaexon
TCONS_00045275-exon-sc0007376-1510915933:410..707TCONS_00045275-exon-sc0007376-1510915933:410..707Clytia hemisphaericaexon
TCONS_00045275-exon-sc0007376-1575043694:410..707TCONS_00045275-exon-sc0007376-1575043694:410..707Clytia hemisphaericaexon
TCONS_00045275-exon-sc0007376-1491911889:857..967TCONS_00045275-exon-sc0007376-1491911889:857..967Clytia hemisphaericaexon
TCONS_00045275-exon-sc0007376-1510915933:857..967TCONS_00045275-exon-sc0007376-1510915933:857..967Clytia hemisphaericaexon
TCONS_00045275-exon-sc0007376-1575043694:857..967TCONS_00045275-exon-sc0007376-1575043694:857..967Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0007376supercontigsc0007376:410..967 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
4.0259	2.8183	8.36157	6.72436	35.3826	23.0416	8.69725	13.3088	4.78087	2.63111	1.7143	2.92483	2.14898	2.52955	4.46388	3.46549	7.73464	4.45991	0.899512	2.01627	2.62626	4.42755	4.08151	3.38685	6.89993	7.21344	1.08464	0	3.18313	1.40945
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00045275 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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