TCONS_00045259 (transcript) - C. hemisphaerica

Overview
NameTCONS_00045259
Unique NameTCONS_00045259
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length731

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00045259 ID=TCONS_00045259|Name=TCONS_00045259|organism=Clytia hemisphaerica|type=transcript|length=731bp
AACTGAAGGATAATGATCTCACCATGGAAGCTTCCACAAAAAAGAACTTT
AAAAGAAGTTTAGAAACGAAGATGCCATCCCTCAAATTTCTGAAAACAAG
AAATGAAACGTACGTTTATCACCAATCTGTTTCCCTCGATGAAATTGTCT
TGAAATATGTCAACGCTAAAGAGGAAAATGATCAACTGAAGAATGAATGG
AAAAATGAAGAGGTACAAGCTATCAAAACCTTTGATTTTATTCGAAAGGA
AATCAGAAATTTAACTGACACGATACCTTGGCCACCACAGCCCCAAGATT
TAACACCAGATAAAGTAGTCATCACACCGATGCTGAATCTGTTACTCTCG
ACCCTTTTGAAAGGAAAAGATGGCACCTTATCGGAAAAAGCTGAAAGATT
GAAGATGTCCATCGCACAAGATNTGGCACCTTATCGGAAAAAGCTGAAAG
ATTGAAGATGTCCATCGCACAAGATTTGATTTACGCCGTGACTAAAgGCA
GGGTAAAGACACCGAAGAGCATCCTACTCCCAAGCATTGTTAAAGCTTTA
ACAAACAACACCGAAATCATTACATCATTGAACAAATTAGGGCACGGTAT
CGCATACACACAACTCATGGAAATTCAAACAGAAAACGCCTATTTAATTG
TtgataaacagaaagaaaatggAACGTTGCTCCTAAATGCACTTAAAGAG
ATCTTCAGCTTATACGTCGCTGACAATATCG
Run BLAST on NCBI

protein sequence of TCONS_00045259-protein

>TCONS_00045259-protein ID=TCONS_00045259-protein|Name=TCONS_00045259-protein|organism=Clytia hemisphaerica|type=polypeptide|length=150bp
LKDNDLTMEASTKKNFKRSLETKMPSLKFLKTRNETYVYHQSVSLDEIVL
KYVNAKEENDQLKNEWKNEEVQAIKTFDFIRKEIRNLTDTIPWPPQPQDL
TPDKVVITPMLNLLLSTLLKGKDGTLSEKAERLKMSIAQDXAPYRKKLKD
Run BLAST on NCBI

transcript from alignment at sc0007327:10..862-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00045259 ID=TCONS_00045259|Name=TCONS_00045259|organism=Clytia hemisphaerica|type=transcript|length=853bp|location=Sequence derived from alignment at sc0007327:10..862- (Clytia hemisphaerica)
AACTGAAGGATAATGATCTCACCATGGAAGCTTCCACAAAAAAGAACTTT
AAAAGAAGTTTAGAAACGAAGATGCCATCCCTCAAATTTCTGAAAACAAG
AAATGAAACGTACGTTTATCACCAATCTGTTTCCCTCGATGAAATTGTCT
TGAAATATGTCAACGCTAAAGAGGAAAATGATCAACTGAAGAATGAATGG
AAAAATGAAGAGGTACAAGCTATCAAAACCTTTGATTTTATTCGAAAGGA
AATCAGAAATTTAACTGACACGATACCTTGGCCACCACAGCCCCAAGATT
TAACACCAGATAAAGTAGTCATCACACCGATGCTGAATCTGTTACTCTCG
ACCCTTTTGAAAGGAAAAGATGGCACCTTATCGGAAAAAGCTGAAAGATT
GAAGATGTCCATCGCACAAGATNTGGCACCTTATCGGAAAAAGCTGAAAG
ATTGAAGATGTCCATCGCACAAGATTTGATTTACGCCGTGACTAAAGGTA
ATTGTTTTATTTTTCATTCCTCCAATTTTAAAAGTAAACGTTATTCTACC
CTTTGTTTCTTTTTTATGGGGTAAAGAATTATTGATCACCTAGTCCTATT
TTACCTTTTTACCTCATAGGCAGGGTAAAGACACCGAAGAGCATCCTACT
CCCAAGCATTGTTAAAGCTTTAACAAACAACACCGAAATCATTACATCAT
TGAACAAATTAGGGCACGGTATCGCATACACACAACTCATGGAAATTCAA
ACAGAAAACGCCTATTTAATTGTTGATAAACAGAAAGAAAATGGAACGTT
GCTCCTAAATGCACTTAAAGAGATCTTCAGCTTATACGTCGCTGACAATA
TCG

Coding sequence (CDS) from alignment at sc0007327:10..862-

>TCONS_00045259 ID=TCONS_00045259|Name=TCONS_00045259|organism=Clytia hemisphaerica|type=CDS|length=453bp|location=Sequence derived from alignment at sc0007327:10..862- (Clytia hemisphaerica)
CTGAAGGATAATGATCTCACCATGGAAGCTTCCACAAAAAAGAACTTTAA
AAGAAGTTTAGAAACGAAGATGCCATCCCTCAAATTTCTGAAAACAAGAA
ATGAAACGTACGTTTATCACCAATCTGTTTCCCTCGATGAAATTGTCTTG
AAATATGTCAACGCTAAAGAGGAAAATGATCAACTGAAGAATGAATGGAA
AAATGAAGAGGTACAAGCTATCAAAACCTTTGATTTTATTCGAAAGGAAA
TCAGAAATTTAACTGACACGATACCTTGGCCACCACAGCCCCAAGATTTA
ACACCAGATAAAGTAGTCATCACACCGATGCTGAATCTGTTACTCTCGAC
CCTTTTGAAAGGAAAAGATGGCACCTTATCGGAAAAAGCTGAAAGATTGA
AGATGTCCATCGCACAAGATNTGGCACCTTATCGGAAAAAGCTGAAAGAT
TGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_028841XLOC_028841Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00045259-proteinTCONS_00045259-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00045259-exon-sc0007327-1575043694:366..862TCONS_00045259-exon-sc0007327-1575043694:366..862Clytia hemisphaericaexon
TCONS_00045259-exon-sc0007327-1575043694:10..243TCONS_00045259-exon-sc0007327-1575043694:10..243Clytia hemisphaericaexon
TCONS_00045259-exon-sc0007327-1510915933:366..862TCONS_00045259-exon-sc0007327-1510915933:366..862Clytia hemisphaericaexon
TCONS_00045259-exon-sc0007327-1510915933:10..243TCONS_00045259-exon-sc0007327-1510915933:10..243Clytia hemisphaericaexon
TCONS_00045259-exon-sc0007327-1491911889:366..862TCONS_00045259-exon-sc0007327-1491911889:366..862Clytia hemisphaericaexon
TCONS_00045259-exon-sc0007327-1491911889:10..243TCONS_00045259-exon-sc0007327-1491911889:10..243Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0007327supercontigsc0007327:10..862 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.385583	0.137287	0.384767	0.128632	2.68866	2.11552	0.428117	0.245412	0.095142	0.699161	0.524972	0.960741	0.0646689	0.407683	0.463113	0.54053	0.596695	0.631802	0.288993	0.296465	0.218028	0.23556	0.155855	0.125448	0.668515	0.318163	0.300704	0	0.15626	0.280556
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00045259 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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