TCONS_00045243 (transcript) - C. hemisphaerica

Overview
NameTCONS_00045243
Unique NameTCONS_00045243
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length850

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00045243 ID=TCONS_00045243|Name=TCONS_00045243|organism=Clytia hemisphaerica|type=transcript|length=850bp
TTTAGCCCCCTTCATTaggttttcttcttctttggttgaattattttatt
ctttaaaagtGAGAAATTCTTATTCACCGATTCTCTTCGAAATATCTTAG
CAACGTCGCTTTCCTAATTACCTAATGTCATCTCCTAGGTAAcagaaaag
ttttaaagaatATCAAATCTTTAACAATTTTATAcaattaattgaaacaa
taataCTCTAACAAACCACGTGTTAGCTCGACACCAGGTATCTTTGAGTC
TAGGTCTCCACAGTGATCTGGCCATAGAAGAACACAAAAATTCTCCACTG
ACAAAAGGGTCGAAAAATACGTGTAATTTCTATACACGTCTACccaaaag
aataaatttccttCAGAAAGTTTCGAAAATCAAGATTCACTTCACAGAGG
ACACACAAAAGACAAGACACGAAATCTTCAAATCGTCCGCCATCATGCAG
TACGCCATCTTTCTTTTAGTGTGTATTTCATACGTTTTTGCTGACGACTA
CTTGGTCAATCCTGACGGCAGCCGAAAAGAATATGACGGTATTGGTATTG
GTTTGATCAACCGACCAAATTATTGCGATCGTACTATCCAAAAAGGAGAT
CGTGTTCGTATGAACTTCAACTGCACACTCGGTGATGGTTACGTCATTGA
TAGCACGTAAGTCAATACTTCATGGATTCTGGGATATTTGAAATAACTTC
GATAAGTTCTAGCTTTATTGATCCGATTTCTGATAATTTTGTGAATCTTA
GAATCTTAAAAGTTAGCGTCAAAGGTTAGATTGTGTTTTAAGTTTTGTAT
TCTTATTTTCTGTTACCAAGAAGATTTGCCAAGATTGACTAGGTTAGGGC
Run BLAST on NCBI

transcript from alignment at sc0007295:5..854

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00045243 ID=TCONS_00045243|Name=TCONS_00045243|organism=Clytia hemisphaerica|type=transcript|length=850bp|location=Sequence derived from alignment at sc0007295:5..854 (Clytia hemisphaerica)
GCCCTAACCTAGTCAATCTTGGCAAATCTTCTTGGTAACAGAAAATAAGA
ATACAAAACTTAAAACACAATCTAACCTTTGACGCTAACTTTTAAGATTC
TAAGATTCACAAAATTATCAGAAATCGGATCAATAAAGCTAGAACTTATC
GAAGTTATTTCAAATATCCCAGAATCCATGAAGTATTGACTTACGTGCTA
TCAATGACGTAACCATCACCGAGTGTGCAGTTGAAGTTCATACGAACACG
ATCTCCTTTTTGGATAGTACGATCGCAATAATTTGGTCGGTTGATCAAAC
CAATACCAATACCGTCATATTCTTTTCGGCTGCCGTCAGGATTGACCAAG
TAGTCGTCAGCAAAAACGTATGAAATACACACTAAAAGAAAGATGGCGTA
CTGCATGATGGCGGACGATTTGAAGATTTCGTGTCTTGTCTTTTGTGTGT
CCTCTGTGAAGTGAATCTTGATTTTCGAAACTTTCTGaaggaaatttatt
cttttggGTAGACGTGTATAGAAATTACACGTATTTTTCGACCCTTTTGT
CAGTGGAGAATTTTTGTGTTCTTCTATGGCCAGATCACTGTGGAGACCTA
GACTCAAAGATACCTGGTGTCGAGCTAACACGTGGTTTGTTAGAGtatta
ttgtttcaattaattgTATAAAATTGTTAAAGATTTGATattctttaaaa
cttttctgTTACCTAGGAGATGACATTAGGTAATTAGGAAAGCGACGTTG
CTAAGATATTTCGAAGAGAATCGGTGAATAAGAATTTCTCacttttaaag
aataaaataattcaaccaaagaagaagaaaacctAATGAAGGGGGCTAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_028825XLOC_028825Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00045243-exon-sc0007295-1491911889:5..854TCONS_00045243-exon-sc0007295-1491911889:5..854Clytia hemisphaericaexon
TCONS_00045243-exon-sc0007295-1510915933:5..854TCONS_00045243-exon-sc0007295-1510915933:5..854Clytia hemisphaericaexon
TCONS_00045243-exon-sc0007295-1575043694:5..854TCONS_00045243-exon-sc0007295-1575043694:5..854Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0007295supercontigsc0007295:5..854 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.166042	0.21589	0.188002	0.18393	156.444	158.836	1109.57	1249.07	970.071	845.775	480.446	413.803	18.2577	13.6854	0.471422	0.168636	69.8857	69.3309	27.0644	29.9832	41.9008	39.4659	10.344	12.1736	8.37881	14.2133	0.151785	0.161989	0.245726	0.0625889
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00045243 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top