TCONS_00045203 (transcript) - C. hemisphaerica

Overview
NameTCONS_00045203
Unique NameTCONS_00045203
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length462

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00045203 ID=TCONS_00045203|Name=TCONS_00045203|organism=Clytia hemisphaerica|type=transcript|length=462bp
GGTTTATCCATTCACACAACCGTGCTCATTTGAATTACACTTTGGAAGTG
AACCATCTGTCAGATGTCCTTGATGAAGAATTTGAAATGTTGAAAGGACA
ATCATCACCCGATACACCAGAGTTGAAGAAAGAATTGAATGAAATCCCTC
AACTTCGTATCAACATTCCCAAAACATTACCCAAGAACCTGGATTGGAGG
GATTATGGAGCGGTTGGTCCAGTTCACAGCCAGAGTTTCTGTGCATCATG
CTGGGCTTTTTCTGCCATTGGTGCCATCGAAGGTGCTTTTGCTATCAAGA
ACGGCAGTATGGAGCAATTATCTATCCAACAATTATTGGATTGTTCCTGG
GGGTATAACAACAATGGATGTCGAGGTGGTTGGAGTTGGAGAGCTTTTCA
ATTCGTCAAAGATCATGGAATAGCAACCAGAAAAAGTTATGGCAAATATT
TGGGACAGGTAT
Run BLAST on NCBI

protein sequence of TCONS_00045203-protein

>TCONS_00045203-protein ID=TCONS_00045203-protein|Name=TCONS_00045203-protein|organism=Clytia hemisphaerica|type=polypeptide|length=153bp
FIHSHNRAHLNYTLEVNHLSDVLDEEFEMLKGQSSPDTPELKKELNEIPQ
LRINIPKTLPKNLDWRDYGAVGPVHSQSFCASCWAFSAIGAIEGAFAIKN
GSMEQLSIQQLLDCSWGYNNNGCRGGWSWRAFQFVKDHGIATRKSYGKYL
GQV
Run BLAST on NCBI

transcript from alignment at sc0007187:142..900-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00045203 ID=TCONS_00045203|Name=TCONS_00045203|organism=Clytia hemisphaerica|type=transcript|length=759bp|location=Sequence derived from alignment at sc0007187:142..900- (Clytia hemisphaerica)
GGTTTATCCATTCACACAACCGTGCTCATTTGAATTACACTTTGGAAGTG
AACCATCTGTCAGATGTCCTTGATGAAGAATTTGAAATGTTGAAAGGACA
ATCATCACCCGATACACCAGAGTTGAAGAAAGAATTGAATGAAATCCCTC
AACTTCGTATCAACATTCCCAAAACATTACCCAAGAACCTGGATTGGAGG
GATTATGGTAAACTGTCGACTAATTTATATTATGAAATGTTATGTTTCTC
GGAATTACATTTTTACCGTACTTGCACTTTATCCTTATTCGTATCGTAAT
TGGCTACCTTCTTTATTTGATTTTCAAGAAATTTTTCATCAAAACACTTT
ACATTTCAGGAGCGGTTGGTCCAGTTCACAGCCAGAGTTTCTGTGCATCA
TGCTGGGCTTTTTCTGCCATTGGTGCCATCGAAGGTGCTTTTGCTATCAA
GGTACAATTAAATCTTGATCTACAAGGAACATATACTCCTTTAGTATGTT
CAGTGATATCACACTAGACTCATTTCAGAGTTATGCAACGGTCCCGCGAA
CGGCTTAAATATTGAAAGCATTCATTTTGAACTTTGCATTCTTTAGAACG
GCAGTATGGAGCAATTATCTATCCAACAATTATTGGATTGTTCCTGGGGG
TATAACAACAATGGATGTCGAGGTGGTTGGAGTTGGAGAGCTTTTCAATT
CGTCAAAGATCATGGAATAGCAACCAGAAAAAGTTATGGCAAATATTTGG
GACAGGTAT

Coding sequence (CDS) from alignment at sc0007187:142..900-

>TCONS_00045203 ID=TCONS_00045203|Name=TCONS_00045203|organism=Clytia hemisphaerica|type=CDS|length=1377bp|location=Sequence derived from alignment at sc0007187:142..900- (Clytia hemisphaerica)
AACGGCAGTATGGAGCAATTATCTATCCAACAATTATTGGATTGTTCCTG
GGGGTATAACAACAATGGATGTCGAGGTGGTTGGAGTTGGAGAGCTTTTC
AATTCGTCAAAGATCATGGAATAGCAACCAGAAAAAGTTATGGCAAATAT
TTGGGACAGGTAGAGCGGTTGGTCCAGTTCACAGCCAGAGTTTCTGTGCA
TCATGCTGGGCTTTTTCTGCCATTGGTGCCATCGAAGGTGCTTTTGCTAT
CAAGTTTATCCATTCACACAACCGTGCTCATTTGAATTACACTTTGGAAG
TGAACCATCTGTCAGATGTCCTTGATGAAGAATTTGAAATGTTGAAAGGA
CAATCATCACCCGATACACCAGAGTTGAAGAAAGAATTGAATGAAATCCC
TCAACTTCGTATCAACATTCCCAAAACATTACCCAAGAACCTGGATTGGA
GGGATTATGAACGGCAGTATGGAGCAATTATCTATCCAACAATTATTGGA
TTGTTCCTGGGGGTATAACAACAATGGATGTCGAGGTGGTTGGAGTTGGA
GAGCTTTTCAATTCGTCAAAGATCATGGAATAGCAACCAGAAAAAGTTAT
GGCAAATATTTGGGACAGGTAGAGCGGTTGGTCCAGTTCACAGCCAGAGT
TTCTGTGCATCATGCTGGGCTTTTTCTGCCATTGGTGCCATCGAAGGTGC
TTTTGCTATCAAGTTTATCCATTCACACAACCGTGCTCATTTGAATTACA
CTTTGGAAGTGAACCATCTGTCAGATGTCCTTGATGAAGAATTTGAAATG
TTGAAAGGACAATCATCACCCGATACACCAGAGTTGAAGAAAGAATTGAA
TGAAATCCCTCAACTTCGTATCAACATTCCCAAAACATTACCCAAGAACC
TGGATTGGAGGGATTATGAACGGCAGTATGGAGCAATTATCTATCCAACA
ATTATTGGATTGTTCCTGGGGGTATAACAACAATGGATGTCGAGGTGGTT
GGAGTTGGAGAGCTTTTCAATTCGTCAAAGATCATGGAATAGCAACCAGA
AAAAGTTATGGCAAATATTTGGGACAGGTAGAGCGGTTGGTCCAGTTCAC
AGCCAGAGTTTCTGTGCATCATGCTGGGCTTTTTCTGCCATTGGTGCCAT
CGAAGGTGCTTTTGCTATCAAGTTTATCCATTCACACAACCGTGCTCATT
TGAATTACACTTTGGAAGTGAACCATCTGTCAGATGTCCTTGATGAAGAA
TTTGAAATGTTGAAAGGACAATCATCACCCGATACACCAGAGTTGAAGAA
AGAATTGAATGAAATCCCTCAACTTCGTATCAACATTCCCAAAACATTAC
CCAAGAACCTGGATTGGAGGGATTATG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_028786XLOC_028786Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00045203-proteinTCONS_00045203-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00045203-exon-sc0007187-1575043694:694..900TCONS_00045203-exon-sc0007187-1575043694:694..900Clytia hemisphaericaexon
TCONS_00045203-exon-sc0007187-1575043694:450..541TCONS_00045203-exon-sc0007187-1575043694:450..541Clytia hemisphaericaexon
TCONS_00045203-exon-sc0007187-1575043694:142..304TCONS_00045203-exon-sc0007187-1575043694:142..304Clytia hemisphaericaexon
TCONS_00045203-exon-sc0007187-1510915933:694..900TCONS_00045203-exon-sc0007187-1510915933:694..900Clytia hemisphaericaexon
TCONS_00045203-exon-sc0007187-1510915933:450..541TCONS_00045203-exon-sc0007187-1510915933:450..541Clytia hemisphaericaexon
TCONS_00045203-exon-sc0007187-1510915933:142..304TCONS_00045203-exon-sc0007187-1510915933:142..304Clytia hemisphaericaexon
TCONS_00045203-exon-sc0007187-1491911889:694..900TCONS_00045203-exon-sc0007187-1491911889:694..900Clytia hemisphaericaexon
TCONS_00045203-exon-sc0007187-1491911889:450..541TCONS_00045203-exon-sc0007187-1491911889:450..541Clytia hemisphaericaexon
TCONS_00045203-exon-sc0007187-1491911889:142..304TCONS_00045203-exon-sc0007187-1491911889:142..304Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0007187supercontigsc0007187:142..900 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.26205	0.410234	0.793868	0.776676	0.567317	0.149434	7.39171	4.89465	2.48152	1.4637	3.55175	2.89513	7.55417	5.42376	7.00711	12.9031	7.05301	7.5528	0.149066	1.55987	2.44045	1.38876	3.85879	3.21585	6.17283	8.19647	0.769123	0.205207	0.311285	0.31715
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000668Peptidase_C1A_C
Vocabulary: Biological Process
TermDefinition
GO:0006508proteolysis
Vocabulary: Molecular Function
TermDefinition
GO:0008234cysteine-type peptidase activity
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006508 proteolysis
molecular_function GO:0008234 cysteine-type peptidase activity
Blast
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BLAST of TCONS_00045203 vs. Swiss-Prot (Human)
Match: CATL2 (Cathepsin L2 OS=Homo sapiens GN=CTSV PE=1 SV=2)

HSP 1 Score: 98.9821 bits (245), Expect = 4.749e-25
Identity = 54/136 (39.71%), Postives = 77/136 (56.62%), Query Frame = 3 
Query:   36 YTLEVNHLSDVLDEEFEMLKGQSSPDTPELKKELNEIPQLRINIPKTLPKNLDWRDYGAVGPVHSQSFCASCWAFSAIGAIEGAFAIKNGSMEQLSIQQLLDCSWGYNNNGCRGGWSWRAFQFVKDH-GIATRKSY 440
            +T+ +N   D+ +EEF  + G          ++  +    R  +   LPK++DWR  G V PV +Q  C SCWAFSA GA+EG    K G +  LS Q L+DCS    N GC GG+  RAFQ+VK++ G+ + +SY
Sbjct:   73 FTMAMNAFGDMTNEEFRQMMGCFR------NQKFRKGKVFREPLFLDLPKSVDWRKKGYVTPVKNQKQCGSCWAFSATGALEGQMFRKTGKLVSLSEQNLVDCSRPQGNQGCNGGFMARAFQYVKENGGLDSEESY 202
The following BLAST results are available for this feature:
BLAST of TCONS_00045203 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
CATL24.749e-2539.71Cathepsin L2 OS=Homo sapiens GN=CTSV PE=1 SV=2[more]
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