TCONS_00045181 (transcript) - C. hemisphaerica

Overview
NameTCONS_00045181
Unique NameTCONS_00045181
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length552

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00045181 ID=TCONS_00045181|Name=TCONS_00045181|organism=Clytia hemisphaerica|type=transcript|length=552bp
ATGAGAGGTTGGCTCCCGAGGGTAAAGGGTTAATGTCAGGTATATGGCGT
GTTTCTATCGATCAGCAACGTAAAAAAAACCCTAGGATACACGGGACGAG
GTTGCGCCCAAACTCGTTCCCAGAGTCACATGCATTCGCACTATTTAACT
TTACTGAAGGACGCGATACAATTGTTTCACGGATAAGAGAGatctatcag
aatcataaatcGTCTGCTAAAGCCAACCCAACTTCTACAAAACCCCAGAT
AGTTCCGATCACTGATCCGATTTACGCCGGCCTTTTTACGCCAGCAGTGA
CGAAAAAATAGCGCCTATGCTATAAGGGCCGATGAGGTACATATAATTTG
ACTGACGCCATCGGCATCGGCGAAGATGGCGGTAAACAGTATCGGGCGTT
AAAGCCGCCAAATGTAAATCAGGCAGTGTCGGGTGTTGATTGTCGGGTGT
TATCACTAAGCTGAGAATTtaagcacccgactgtcgggtgcactaattgt
cgggtgttttcgcaaatttagaaatttcagcacccgacaaaacacccgac
ag
Run BLAST on NCBI

transcript from alignment at sc0007146:556..1107

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00045181 ID=TCONS_00045181|Name=TCONS_00045181|organism=Clytia hemisphaerica|type=transcript|length=552bp|location=Sequence derived from alignment at sc0007146:556..1107 (Clytia hemisphaerica)
ctgtcgggtgttttgtcgggtgctgaaatttctaaatttgcgaaaacacc
cgacaattagtgcacccgacagtcgggtgcttaAATTCTCAGCTTAGTGA
TAACACCCGACAATCAACACCCGACACTGCCTGATTTACATTTGGCGGCT
TTAACGCCCGATACTGTTTACCGCCATCTTCGCCGATGCCGATGGCGTCA
GTCAAATTATATGTACCTCATCGGCCCTTATAGCATAGGCGCTATTTTTT
CGTCACTGCTGGCGTAAAAAGGCCGGCGTAAATCGGATCAGTGATCGGAA
CTATCTGGGGTTTTGTAGAAGTTGGGTTGGCTTTAGCAGACgatttatga
ttctgatagatCTCTCTTATCCGTGAAACAATTGTATCGCGTCCTTCAGT
AAAGTTAAATAGTGCGAATGCATGTGACTCTGGGAACGAGTTTGGGCGCA
ACCTCGTCCCGTGTATCCTAGGGTTTTTTTTACGTTGCTGATCGATAGAA
ACACGCCATATACCTGACATTAACCCTTTACCCTCGGGAGCCAACCTCTC
AT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_028764XLOC_028764Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00045181-exon-sc0007146-1491911889:556..1107TCONS_00045181-exon-sc0007146-1491911889:556..1107Clytia hemisphaericaexon
TCONS_00045181-exon-sc0007146-1510915933:556..1107TCONS_00045181-exon-sc0007146-1510915933:556..1107Clytia hemisphaericaexon
TCONS_00045181-exon-sc0007146-1575043694:556..1107TCONS_00045181-exon-sc0007146-1575043694:556..1107Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0007146supercontigsc0007146:556..1107 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.827469	1.21037	1.99092	0.916613	1.54824	0.992014	2.81728	3.99897	1.62222	2.12628	1.68236	2.03736	0.963067	2.29125	1.52706	2.26906	1.85008	2.39889	1.31943	2.42053	1.63722	2.3414	0	0.5391	2.38636	2.27956	2.83656	2.11908	1.29797	1.52056
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00045181 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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