TCONS_00045175 (transcript) - C. hemisphaerica

Overview
NameTCONS_00045175
Unique NameTCONS_00045175
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length796

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00045175 ID=TCONS_00045175|Name=TCONS_00045175|organism=Clytia hemisphaerica|type=transcript|length=796bp
ATATTTTCAGGGATTATCTTGTTACATGAAAACTCGTTGGTTAATCAGCT
TGATTTAATTCATTATGTTATAATTTTGTAATCGTCCTCATATCTGGATT
AATATCTTTTTACCCGGACATCATTATGGGATATTTCTCCCCGTACTTTT
CCACTTAATCacttcatttcattttcaagtttcaCTTTCGCATATCGGAG
GACCACCATTACTCGTCCTNTTCCCGTACTTTACCACTTAATCacttcat
ttcattttcaagtttcaCTTTCGCATATCGGAGGACCACCATTACTCGTC
CGGTGTTTTCTATCGTCTTTCATTTCGTTCAGCAAGGAAAGCACACTTGT
TAATTTCTCATCATAAATATCAAGCAAATTACCAAGCTTCGTTTCCAACG
CACACAAACGTTGATTGAAATTCTGATCGTATTTGGGCAGCTCCTCATCT
AGGGCGGTCATCACCACCTTATTTAACAGACTCCCCCTCTCAGGAGGCGC
CCTTTTTGGGGGAGTGCGTTGTCTCTCCGTTGTACTACCATTGGCGATTA
ATTGTTGTTTGGCATTGCCATTACAATGAGGTATAGTTCCTGTTTCTACG
TTCTGTAGACGATCAGTTTCAGTGTTATGGCTATCATGTTCGTCTTGAGA
GATGTTGCTACGTTGAGACTTGCCATTACGATGTATACGATTCCATTTAT
GCAAGATGGGCATACCTAACGCCTGTCGTGCGATCGCTGCGATGTGTATC
TTGTCGTCTTTACGTTTGCTTTCTTGTTTGAAGTAACCCTCCTGAA
Run BLAST on NCBI

protein sequence of TCONS_00045175-protein

>TCONS_00045175-protein ID=TCONS_00045175-protein|Name=TCONS_00045175-protein|organism=Clytia hemisphaerica|type=polypeptide|length=178bp
QEGYFKQESKRKDDKIHIAAIARQALGMPILHKWNRIHRNGKSQRSNISQ
DEHDSHNTETDRLQNVETGTIPHCNGNAKQQLIANGSTTERQRTPPKRAP
PERGSLLNKVVMTALDEELPKYDQNFNQRLCALETKLGNLLDIYDEKLTS
VLSLLNEMKDDRKHRTSNGGPPICESET
Run BLAST on NCBI

transcript from alignment at sc0007137:343..1138

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00045175 ID=TCONS_00045175|Name=TCONS_00045175|organism=Clytia hemisphaerica|type=transcript|length=796bp|location=Sequence derived from alignment at sc0007137:343..1138 (Clytia hemisphaerica)
TTCAGGAGGGTTACTTCAAACAAGAAAGCAAACGTAAAGACGACAAGATA
CACATCGCAGCGATCGCACGACAGGCGTTAGGTATGCCCATCTTGCATAA
ATGGAATCGTATACATCGTAATGGCAAGTCTCAACGTAGCAACATCTCTC
AAGACGAACATGATAGCCATAACACTGAAACTGATCGTCTACAGAACGTA
GAAACAGGAACTATACCTCATTGTAATGGCAATGCCAAACAACAATTAAT
CGCCAATGGTAGTACAACGGAGAGACAACGCACTCCCCCAAAAAGGGCGC
CTCCTGAGAGGGGGAGTCTGTTAAATAAGGTGGTGATGACCGCCCTAGAT
GAGGAGCTGCCCAAATACGATCAGAATTTCAATCAACGTTTGTGTGCGTT
GGAAACGAAGCTTGGTAATTTGCTTGATATTTATGATGAGAAATTAACAA
GTGTGCTTTCCTTGCTGAACGAAATGAAAGACGATAGAAAACACCGGACG
AGTAATGGTGGTCCTCCGATATGCGAAAGtgaaacttgaaaatgaaatga
agtGATTAAGTGGTAAAGTACGGGAANAGGACGAGTAATGGTGGTCCTCC
GATATGCGAAAGtgaaacttgaaaatgaaatgaagtGATTAAGTGGAAAA
GTACGGGGAGAAATATCCCATAATGATGTCCGGGTAAAAAGATATTAATC
CAGATATGAGGACGATTACAAAATTATAACATAATGAATTAAATCAAGCT
GATTAACCAACGAGTTTTCATGTAACAAGATAATCCCTGAAAATAT

Coding sequence (CDS) from alignment at sc0007137:343..1138

>TCONS_00045175 ID=TCONS_00045175|Name=TCONS_00045175|organism=Clytia hemisphaerica|type=CDS|length=537bp|location=Sequence derived from alignment at sc0007137:343..1138 (Clytia hemisphaerica)
CAGGAGGGTTACTTCAAACAAGAAAGCAAACGTAAAGACGACAAGATACA
CATCGCAGCGATCGCACGACAGGCGTTAGGTATGCCCATCTTGCATAAAT
GGAATCGTATACATCGTAATGGCAAGTCTCAACGTAGCAACATCTCTCAA
GACGAACATGATAGCCATAACACTGAAACTGATCGTCTACAGAACGTAGA
AACAGGAACTATACCTCATTGTAATGGCAATGCCAAACAACAATTAATCG
CCAATGGTAGTACAACGGAGAGACAACGCACTCCCCCAAAAAGGGCGCCT
CCTGAGAGGGGGAGTCTGTTAAATAAGGTGGTGATGACCGCCCTAGATGA
GGAGCTGCCCAAATACGATCAGAATTTCAATCAACGTTTGTGTGCGTTGG
AAACGAAGCTTGGTAATTTGCTTGATATTTATGATGAGAAATTAACAAGT
GTGCTTTCCTTGCTGAACGAAATGAAAGACGATAGAAAACACCGGACGAG
TAATGGTGGTCCTCCGATATGCGAAAGtgaaacttga
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_028758XLOC_028758Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00045175-proteinTCONS_00045175-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00045175-exon-sc0007137-1491911889:343..1138TCONS_00045175-exon-sc0007137-1491911889:343..1138Clytia hemisphaericaexon
TCONS_00045175-exon-sc0007137-1510915933:343..1138TCONS_00045175-exon-sc0007137-1510915933:343..1138Clytia hemisphaericaexon
TCONS_00045175-exon-sc0007137-1575043694:343..1138TCONS_00045175-exon-sc0007137-1575043694:343..1138Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0007137supercontigsc0007137:343..1138 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.29669	2.53432	3.76377	2.87886	0	0	11.1894	12.2212	8.30173	10.2199	3.79644	6.44034	4.74314	3.04732	1.2355	1.731	3.67508	4.69693	7.06729	7.46264	4.32426	3.33485	3.04912	5.6702	7.78689	9.78737	7.79015	6.72185	0.536661	1.0252
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00045175 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top