TCONS_00045157 (transcript) - C. hemisphaerica

Overview
NameTCONS_00045157
Unique NameTCONS_00045157
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length272

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00045157 ID=TCONS_00045157|Name=TCONS_00045157|organism=Clytia hemisphaerica|type=transcript|length=272bp
AATCCATAATGGCTTCTCCAATGTTTGGATGTGTAATTCCTGGTAGAATG
CCTTTATTTGACGCACAACAAGTGAGTGAGAATCAAGTTGTCTTTCAACT
CCCACAATGCAATTCGATAAACCACGTGGTCCTCTTCATGACTGGATCCC
AACCTATCCCACAAGGCTTTGCAGCAGCAGTTTATTTGTGTTGGCCCAAA
CCTCAACCGGCTTGGTATTTGCTTGGTTTCCTTGGTAACGAAAAACCGAG
TGTCATCTTTAAAATTGCAAAG
Run BLAST on NCBI

transcript from alignment at sc0007106:43..1165-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00045157 ID=TCONS_00045157|Name=TCONS_00045157|organism=Clytia hemisphaerica|type=transcript|length=1123bp|location=Sequence derived from alignment at sc0007106:43..1165- (Clytia hemisphaerica)
AATCCATAATGGCTTCTCCAATGTTTGGATGTGTAATTCCTGGTAGAATG
GTAAGAATTTCATTTCAGAGGTTTCTCAAATTTTGTTAAGTTACTCCTTA
GGTGCCCCACCGCTTCTTAATTTTTCAAAATTTACCAACCCCCCGTACCT
TATTAGGACCCCGCCCCCCGTTTATTAATTCTTACAAGAATATTTTCAGT
TAGCAAGAAAAAGTCCCGTTGTTTTGCTCCAAAAAGCCTGATTTTAGCTT
ATATTCACCTTATTTTTGGGTTTTCAGAGGTACAATTTCCAACCCCCCAG
CAATAAGGTCCCCCCGAAAATTTTCCAAACCCCCCCCGTTTATTTGGCAC
CTAAGAGTACGTAACTTCTGCCTGCCATTTTGGAAGCAAACGTTCGATTT
GCGTAAGTGATTACATATACAGATTCGAACGTTTGCCTCCATGATGGCGG
AAATTACGTAACTTTGTTTTTATCGTTTTTCACTTCAGCTCCTGTTATTG
AAATTTGTTTTGTTTTTGCTCATTTGCTTGATTAATGAACCAATTAAAAG
ATGAGAATTTGGTCAGATTGTCCCTCCCCTACCTTTGGGTAGATAGTTAT
CGAAAGATGAGCATTCGGGTTGTCTCCCACTGTGGTCGCCGACTTTCTTA
CATTGGGCTTTTTCAGAAAAAAATTAAATATGGGGGGGGGTGGAGGGTAT
AATAATCTTCAGTGATTTACCCCCAGACAAATTGACTTTTGGGCCCCCGG
AAAACTTGTTTTACTCCCTGGACAAGGCAAATTTTGATGATTTTTCGCTA
CCCCCCGGACAATATATCCTCCACCCCCCATGTACGGACATTTTTTGGAA
GAGCCCATTTTCAGAAACGTGTTTGAATTGTTCACCTTTTCCTATGCATA
GCCTTTATTTGACGCACAACAAGTGAGTGAGAATCAAGTTGTCTTTCAAC
TCCCACAATGCAATTCGATAAACCACGTGGTCCTCTTCATGACTGGATCC
CAACCTATCCCACAAGGCTTTGCAGCAGCAGTTTATTTGTGTTGGCCCAA
ACCTCAACCGGCTTGGTATTTGCTTGGTTTCCTTGGTAACGAAAAACCGA
GTGTCATCTTTAAAATTGCAAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_028740XLOC_028740Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00045157-exon-sc0007106-1575043694:1116..1165TCONS_00045157-exon-sc0007106-1575043694:1116..1165Clytia hemisphaericaexon
TCONS_00045157-exon-sc0007106-1575043694:43..264TCONS_00045157-exon-sc0007106-1575043694:43..264Clytia hemisphaericaexon
TCONS_00045157-exon-sc0007106-1510915933:1116..1165TCONS_00045157-exon-sc0007106-1510915933:1116..1165Clytia hemisphaericaexon
TCONS_00045157-exon-sc0007106-1510915933:43..264TCONS_00045157-exon-sc0007106-1510915933:43..264Clytia hemisphaericaexon
TCONS_00045157-exon-sc0007106-1491911889:1116..1165TCONS_00045157-exon-sc0007106-1491911889:1116..1165Clytia hemisphaericaexon
TCONS_00045157-exon-sc0007106-1491911889:43..264TCONS_00045157-exon-sc0007106-1491911889:43..264Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0007106supercontigsc0007106:43..1165 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.76122	0	10.3942	0	1.04128	0	0	0	8.99802	7.06131	0	7.23845	5.10076	9.86335	9.56689	13.1565	23.929	15.9378	5.7557	9.13056	0	3.70337	0	8.56322	0	0	1.77198	0	1.61007	0
Blast
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BLAST of TCONS_00045157 vs. Swiss-Prot (Human)
Match: HIKES (Protein Hikeshi OS=Homo sapiens GN=HIKESHI PE=1 SV=2)

HSP 1 Score: 93.5893 bits (231), Expect = 1.367e-24
Identity = 44/85 (51.76%), Postives = 57/85 (67.06%), Query Frame = 3 
Query:   21 MFGCVIPGRMPLFDAQQVSENQVVFQLPQCNSINHVVLFMTGSQPIPQGFAAAVYLCWPKPQ--PAWYLLGFLGNEKPSVIFKIA 269
            MFGC++ GR+    AQQV+E++ VF LP   SINHVV+FM G+ P P+G   +VY  +P     P W LLGF+ N KPS IFKI+
Sbjct:    1 MFGCLVAGRLVQTAAQQVAEDKFVFDLPDYESINHVVVFMLGTIPFPEGMGGSVYFSYPDSNGMPVWQLLGFVTNGKPSAIFKIS 85
The following BLAST results are available for this feature:
BLAST of TCONS_00045157 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
HIKES1.367e-2451.76Protein Hikeshi OS=Homo sapiens GN=HIKESHI PE=1 SV... [more]
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