TCONS_00045147 (transcript) - C. hemisphaerica

Overview
NameTCONS_00045147
Unique NameTCONS_00045147
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1086

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00045147 ID=TCONS_00045147|Name=TCONS_00045147|organism=Clytia hemisphaerica|type=transcript|length=1086bp
TACTGCCATGCCCAGAGAATTTAGTGGCCTTAGACTGCGAGATGGTCGGT
GTCGGCAAATCGAAACATGACAGCTTGGCGCGATGTAGCATTGTCGATTA
CCATGGTAATGTACTTTACGATCAATACGTCCAATCACGTGACCAAGTCA
CTGATTATCGGACACCCTGGAGTGGCATTCGTCCGAAAGATTTGGAAAAT
GCAGTACCTTTTCTCATGGCTCGTCGTCAAATTTTACAGACTTTGAAAGG
GAAAATCATTGTAGGACATGCTTTGAATTTCGAtatgaaaattctaaaaa
ttcgTTGGCCTAAGGATAAAATTCGTGACacatcaaaatttcaaccttta
CGTGCTAAAGctaatttgaaagataataatACACCGTCTTTGAGGCGTCT
GACAAGAGAATTATTGTTTAGGGATATTCAACGTTCTACACACTGCTCCA
TTGAGGATTCGATCGCTGCAATGGATTTATACCGCATTGTTGAAAACGAA
TGGGAAAAACCAACGAAATCGGTATATTTTGATGATTTGTTTTGGCCGAA
ATGTTTGGATAACAAATGAAAATCTCTCGTCGTGTATCGTTGATATTTCT
AGTTGTCATTCTACGTGAAATATAATGAAGAATCGTAATTTTACCCAACA
ACCATATTTTTTTGAGCAAATTGGGTAGTTTGAGCTAAAGCTGGAATATA
CTTACCTATAGTGTATAGTCtggtaaaaaacaaaattcgcgaaattagaT
ACATACGcaccaaaaaaattcaaaataggcCGAAAATTTTACATTGCGTT
ACTATTTTTGCGACTATTCTGTCACAATTTTCCTACTTTTTTATACTATT
TTTGCATCTAATCAAGGTTAGGGTAACCAGAGCCATATAATTATCAAGAA
AGTTATCTTTCAATCCATCAAACAAAACTTAAACTCAAACtcaggagtga
ttggtgttttttttactttttaatttttgcatcTATAAtatacgttgtgt
ttcaagcaaaatcagtcttattttcttgttttgaccCTTTCGTTCAATAT
CCAATTTAGTTAATGGCGAAATTTAATACATTCGAA
Run BLAST on NCBI

protein sequence of TCONS_00045147-protein

>TCONS_00045147-protein ID=TCONS_00045147-protein|Name=TCONS_00045147-protein|organism=Clytia hemisphaerica|type=polypeptide|length=188bp
LPCPENLVALDCEMVGVGKSKHDSLARCSIVDYHGNVLYDQYVQSRDQVT
DYRTPWSGIRPKDLENAVPFLMARRQILQTLKGKIIVGHALNFDMKILKI
RWPKDKIRDTSKFQPLRAKANLKDNNTPSLRRLTRELLFRDIQRSTHCSI
EDSIAAMDLYRIVENEWEKPTKSVYFDDLFWPKCLDNK
Run BLAST on NCBI

transcript from alignment at sc0007078:98..1183

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00045147 ID=TCONS_00045147|Name=TCONS_00045147|organism=Clytia hemisphaerica|type=transcript|length=1086bp|location=Sequence derived from alignment at sc0007078:98..1183 (Clytia hemisphaerica)
TTCGAATGTATTAAATTTCGCCATTAACTAAATTGGATATTGAACGAAAG
ggtcaaaacaagaaaataagactgattttgcttgaaacacaacgtataTT
ATAgatgcaaaaattaaaaagtaaaaaaaacaccaatcactcctgaGTTT
GAGTTTAAGTTTTGTTTGATGGATTGAAAGATAACTTTCTTGATAATTAT
ATGGCTCTGGTTACCCTAACCTTGATTAGATGCAAAAATAGTATAAAAAA
GTAGGAAAATTGTGACAGAATAGTCGCAAAAATAGTAACGCAATGTAAAA
TTTTCGgcctattttgaatttttttggtgCGTATGTAtctaatttcgcga
attttgttttttaccaGACTATACACTATAGGTAAGTATATTCCAGCTTT
AGCTCAAACTACCCAATTTGCTCAAAAAAATATGGTTGTTGGGTAAAATT
ACGATTCTTCATTATATTTCACGTAGAATGACAACTAGAAATATCAACGA
TACACGACGAGAGATTTTCATTTGTTATCCAAACATTTCGGCCAAAACAA
ATCATCAAAATATACCGATTTCGTTGGTTTTTCCCATTCGTTTTCAACAA
TGCGGTATAAATCCATTGCAGCGATCGAATCCTCAATGGAGCAGTGTGTA
GAACGTTGAATATCCCTAAACAATAATTCTCTTGTCAGACGCCTCAAAGA
CGGTGTattattatctttcaaattagCTTTAGCACGtaaaggttgaaatt
ttgatgtGTCACGAATTTTATCCTTAGGCCAAcgaatttttagaattttc
ataTCGAAATTCAAAGCATGTCCTACAATGATTTTCCCTTTCAAAGTCTG
TAAAATTTGACGACGAGCCATGAGAAAAGGTACTGCATTTTCCAAATCTT
TCGGACGAATGCCACTCCAGGGTGTCCGATAATCAGTGACTTGGTCACGT
GATTGGACGTATTGATCGTAAAGTACATTACCATGGTAATCGACAATGCT
ACATCGCGCCAAGCTGTCATGTTTCGATTTGCCGACACCGACCATCTCGC
AGTCTAAGGCCACTAAATTCTCTGGGCATGGCAGTA

Coding sequence (CDS) from alignment at sc0007078:98..1183

>TCONS_00045147 ID=TCONS_00045147|Name=TCONS_00045147|organism=Clytia hemisphaerica|type=CDS|length=567bp|location=Sequence derived from alignment at sc0007078:98..1183 (Clytia hemisphaerica)
TCATTTGTTATCCAAACATTTCGGCCAAAACAAATCATCAAAATATACCG
ATTTCGTTGGTTTTTCCCATTCGTTTTCAACAATGCGGTATAAATCCATT
GCAGCGATCGAATCCTCAATGGAGCAGTGTGTAGAACGTTGAATATCCCT
AAACAATAATTCTCTTGTCAGACGCCTCAAAGACGGTGTattattatctt
tcaaattagCTTTAGCACGtaaaggttgaaattttgatgtGTCACGAATT
TTATCCTTAGGCCAAcgaatttttagaattttcataTCGAAATTCAAAGC
ATGTCCTACAATGATTTTCCCTTTCAAAGTCTGTAAAATTTGACGACGAG
CCATGAGAAAAGGTACTGCATTTTCCAAATCTTTCGGACGAATGCCACTC
CAGGGTGTCCGATAATCAGTGACTTGGTCACGTGATTGGACGTATTGATC
GTAAAGTACATTACCATGGTAATCGACAATGCTACATCGCGCCAAGCTGT
CATGTTTCGATTTGCCGACACCGACCATCTCGCAGTCTAAGGCCACTAAA
TTCTCTGGGCATGGCAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_028730XLOC_028730Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00045147-proteinTCONS_00045147-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00045147-exon-sc0007078-1491911889:98..1183TCONS_00045147-exon-sc0007078-1491911889:98..1183Clytia hemisphaericaexon
TCONS_00045147-exon-sc0007078-1510915933:98..1183TCONS_00045147-exon-sc0007078-1510915933:98..1183Clytia hemisphaericaexon
TCONS_00045147-exon-sc0007078-1575043694:98..1183TCONS_00045147-exon-sc0007078-1575043694:98..1183Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0007078supercontigsc0007078:98..1183 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
71.0364	79.9622	86.5687	89.2648	85.4859	64.8362	88.1039	95.3361	186.98	130.392	197.916	199.935	165.543	163.563	153.17	136.149	130.675	127.588	133.137	154.483	129.346	124.025	110.67	116.049	101.069	124.817	164.357	196.303	110.589	117.568
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR013520Exonuclease_RNaseT/DNA_pol3
IPR012337RNaseH-like_dom
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
Blast
[Close]
BLAST of TCONS_00045147 vs. Swiss-Prot (Human)
Match: I20L2 (Interferon-stimulated 20 kDa exonuclease-like 2 OS=Homo sapiens GN=ISG20L2 PE=1 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 5.132e-53
Identity = 91/169 (53.85%), Postives = 119/169 (70.41%), Query Frame = 3 
Query:   12 PENLVALDCEMVGVGKSKH-DSLARCSIVDYHGNVLYDQYVQSRDQVTDYRTPWSGIRPKDLENAVPFLMARRQILQTLKGKIIVGHALNFDMKILKIRWPKDKIRDTSKFQPLRAKANLKDNNTPSLRRLTRELLFRDIQ--RSTHCSIEDSIAAMDLYRIVENEWEK 509
            P  +VA+DCEMVG G   H  SLARCSIV+Y+G+VLYD+Y+     + DYRT WSGIR + + NA PF +AR QIL+ L GKI+VGHA++ D K L+   PK   RDTS   PL  KA+  +N T SL+ LT++LL RDIQ  +S H S+ED+ A M+LY++VE EWE+
Sbjct:  176 PRKMVAIDCEMVGTGPKGHVSSLARCSIVNYNGDVLYDEYILPPCHIVDYRTRWSGIRKQHMVNATPFKIARGQILKILTGKIVVGHAIHNDFKALQYFHPKSLTRDTSHIPPLNRKADCPENATMSLKHLTKKLLNRDIQVGKSGHSSVEDAQATMELYKLVEVEWEE 344
The following BLAST results are available for this feature:
BLAST of TCONS_00045147 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
I20L25.132e-5353.85Interferon-stimulated 20 kDa exonuclease-like 2 OS... [more]
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